Clone BS10433 Report

Search the DGRC for BS10433

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG7536-RA
Protein status:BS10433.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10433.3prime Sequence

922 bp (762 high quality bases) assembled on 2006-04-19

> BS10433.3prime
ATGGTCTAGAAAGCTTCTACAATTTTTTACTGTCCATATCGATCCTGAGA
TCGGGCAGCGATCCGCGTGTCTGCAGCAGGCTCCGCTTCTCCGGATCCTT
AACCTTCTTGGGCTTAGGTCGGTTCGCCTTCGTGTAGCGATTGATCACAC
CGTCAGCCTCGTCCATCAGGCGCAGGATGAGCGCCTGGTCGGAGGAGTCC
AGCGGCGCTATCGAGATGTCACGAACGGCTCGGAACTTACCGCAGTTGTT
CAGATGCTCGTTCTCCAACCGGAAAAAGTTCCACACAAAGCGACGGAATA
CCTCCAGAATGCCTGTGACGGAGGTCATTATGTCTGAGCTAACGATTTTC
ATCTCGGTGAGGTAGAAAGACAGCGCCCAAATAAAGCGCAGCGCCAGATC
CTCCAAAATGGCAAAGTAGTAAAAACCCGTCGATGAGTAGACAACCTCCT
CGCGCAGGAAAGTATTCTCGCCGGCGTTCTTGTCGAACAGACCCCAATCC
ATTTTGATATCCCACGTGTAGGCGTAGCAAGAGGACACAATCGAGGCGAT
AATCCACAACCAGGTATAGGGATTATCGAATGTGCTGGCATAGTTCGGAC
TGTGAAAGCTCTTGAGCGTGGCGAAGATCACCACCATGAAGGTTGTGGAG
TATTTGCCAGCATTCACCAAATGAGGAAATGCCTCCCGCGAGTCGCGATA
TCGACGCAGGCATTGTGCAAATCGAAACCAGGCGGGCAGGCAATTAACAA
TCGGCCGGATGATAAAGTCCTTCTCCATGCAAATGGAGGCATCCCTCGCC
TCCGTCCAGTTGCCATTTGTGAAATAGAAGCATATGAGATACTCGAAATC
TAGGATAGCCGTGGCCAGCGAATTGAGTTGATCGCCGAGCCAGAAATCCG
CGAAGCCCACGTGAAAAGAACG

BS10433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-PB 2025 CG7536-RB 1126..2025 916..17 4500 100 Minus
CG7536-PA 2025 CG7536-RA 1126..2025 916..17 4500 100 Minus
CG10483-PA 2016 CG10483-RA 1522..1569 529..482 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 3537 CG7536-RD 1842..2746 922..17 4505 99.9 Minus
CG7536-RC 3494 CG7536-RC 1427..2331 922..17 4505 99.9 Minus
CG7536-RA 3019 CG7536-RA 1478..2382 922..17 4505 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18080416..18080734 598..916 1595 100 Plus
X 23542271 X 18079654..18079931 17..294 1390 100 Plus
X 23542271 X 18080187..18080357 427..597 855 100 Plus
X 23542271 X 18079993..18080127 294..428 675 100 Plus
3L 28110227 3L 5918754..5918856 427..529 230 81.6 Plus
Blast to na_te.dros performed on 2015-02-06 17:22:11 has no hits.

BS10433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:51 Download gff for BS10433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1121..2025 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:33 Download gff for BS10433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1121..2025 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:31:43 Download gff for BS10433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 1478..2384 13..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:29:28 Download gff for BS10433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 1478..2384 13..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:29:28 Download gff for BS10433.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18079652..18079930 13..293 99 <- Plus
X 18079993..18080126 294..427 100 <- Plus
X 18080188..18080357 428..597 100 <- Plus
X 18080416..18080739 598..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:31:43 Download gff for BS10433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17973685..17973963 13..293 99 <- Plus
arm_X 17974026..17974159 294..427 100 <- Plus
arm_X 17974221..17974390 428..597 100 <- Plus
arm_X 17974449..17974772 598..922 99   Plus

BS10433.5prime Sequence

929 bp (839 high quality bases) assembled on 2006-04-19

> BS10433.5prime
GAAGTTATCAGTCGACATGAAATTCGCCGAGCACCTGTCGGCGCACATAA
CGCCCGAGTGGCGCAAACAATACATTAACTATGAGGAAATGAAGGCCATG
CTGTATTTGGCCGTGGAGGAGGCGCCATCGGTGGAGAGCGTCGAGGACGA
CGTGCTGAAGCGGCACTTCGCCAATTTCGATGAGAACTTCTTTCACTACT
GCGACAAGGAGCTAAAGAAGATCAATACGTTCTACTCGGAGAAGCTGGCG
GAGGCCACGCGAAAGTTTGCCACCCTGAATGCCGAACTGAAGACCTCCAT
CGAGGAGTCGGAGCGAAGTGCCAAGAAGTCCAAGGGACACAAACGACATG
CCGCCTTGCCGGATCGCAAGGCGCGCGAGCTGAAGTTGGCCTTCAGTGAG
TTCTACCTGAGTCTGATCCTCCTGCAGAACTATCAGAATCTGAATCACAC
CGGCTTTCGTAAAATACTCAAGAAGCACGATAAACTTTTGCGTGTGGACA
CCGGTGCCAAATGGAGGCAGGAGTATGTGGAGGCCTCACACTTCTTCACC
AACAAGGACATCGACAACATTATCAATGAGACGGAGACGACGGTCACCGG
CGAACTGGAAGGCGGCGATCGGCAGCGAGCGATGAAGAGATTGCGAGTAC
CACCGCTGGGCGAACAGCAGAGTCCATGGACCACGTTCAAGGTTGGCCTC
TTCTCCGGCAGCTTTATAGTGCTGGTCATTGTGGTCGTGGTGTCGGCCAT
CTTCCACGAGATTAGCGGCGAGAACCTCAAGGTTACGTTCCGACTCTACC
GCGGTCCCCTGCTAATCATCGAGTTCATCTTCCTCATCGGAGTGAACATC
TACGGCTGGCGGTCGTCTGGCGTTATCATGTCCTGATCTTCGAGCTGGAT
CCGCGAAATCATCTATCCGAGCAGCATCT

BS10433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-PB 2025 CG7536-RB 1..859 17..875 4295 100 Plus
CG7536-PA 2025 CG7536-RA 1..859 17..875 4295 100 Plus
CG7536-PB 2025 CG7536-RB 860..914 875..929 275 100 Plus
CG7536-PA 2025 CG7536-RA 860..914 875..929 275 100 Plus
CG10483-PA 2016 CG10483-RA 1..90 17..106 275 92.2 Plus
CG10483-PA 2016 CG10483-RA 640..695 647..702 155 91 Plus
CG10483-PA 2016 CG10483-RA 154..197 170..213 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 3537 CG7536-RD 721..1635 16..929 4550 99.9 Plus
CG7536-RC 3494 CG7536-RC 306..1220 16..929 4550 99.9 Plus
CG7536-RA 3019 CG7536-RA 357..1271 16..929 4550 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18080946..18081391 929..485 2180 99.8 Minus
X 23542271 X 18081743..18082143 484..84 2005 100 Minus
3L 28110227 3L 5920070..5920445 758..383 380 73.4 Minus
X 23542271 X 18082218..18082288 86..16 355 100 Minus
3L 28110227 3L 5920582..5920753 255..84 290 77.9 Minus
3L 28110227 3L 5921136..5921209 86..13 265 90.5 Minus
Blast to na_te.dros performed on 2015-02-10 04:30:38 has no hits.

BS10433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:52 Download gff for BS10433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1..914 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:36 Download gff for BS10433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-PA 1..914 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:15 Download gff for BS10433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 357..1271 16..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:22:54 Download gff for BS10433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 357..1271 16..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:22:54 Download gff for BS10433.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18080946..18081391 485..929 99 <- Minus
X 18081743..18082141 86..484 100 <- Minus
X 18082219..18082288 16..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:15 Download gff for BS10433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17974979..17975424 485..929 99 <- Minus
arm_X 17975776..17976174 86..484 100 <- Minus
arm_X 17976252..17976321 16..85 100   Minus

BS10433.complete Sequence

2057 bp assembled on 2007-11-30

GenBank Submission: FJ636659

> BS10433.complete
GAAGTTATCAGTCGACATGAAATTCGCCGAGCACCTGTCGGCGCACATAA
CGCCCGAGTGGCGCAAACAATACATTAACTATGAGGAAATGAAGGCCATG
CTGTATTTGGCCGTGGAGGAGGCGCCATCGGTGGAGAGCGTCGAGGACGA
CGTGCTGAAGCGGCACTTCGCCAATTTCGATGAGAACTTCTTTCACTACT
GCGACAAGGAGCTAAAGAAGATCAATACGTTCTACTCGGAGAAGCTGGCG
GAGGCCACGCGAAAGTTTGCCACCCTGAATGCCGAACTGAAGACCTCCAT
CGAGGAGTCGGAGCGAAGTGCCAAGAAGTCCAAGGGACACAAACGACATG
CCGCCTTGCCGGATCGCAAGGCGCGCGAGCTGAAGTTGGCCTTCAGTGAG
TTCTACCTGAGTCTGATCCTCCTGCAGAACTATCAGAATCTGAATCACAC
CGGCTTTCGTAAAATACTCAAGAAGCACGATAAACTTTTGCGTGTGGACA
CCGGTGCCAAATGGAGGCAGGAGTATGTGGAGGCCTCACACTTCTTCACC
AACAAGGACATCGACAACATTATCAATGAGACGGAGACGACGGTCACCGG
CGAACTGGAAGGCGGCGATCGGCAGCGAGCGATGAAGAGATTGCGAGTAC
CACCGCTGGGCGAACAGCAGAGTCCATGGACCACGTTCAAGGTTGGCCTC
TTCTCCGGCAGCTTTATAGTGCTGGTCATTGTGGTCGTGGTGTCGGCCAT
CTTCCACGAGATTAGCGGCGAGAACCTCAAGGTTACGTTCCGACTCTACC
GCGGTCCCCTGCTAATCATCGAGTTCATCTTCCTCATCGGAGTGAACATC
TACGGCTGGCGGTCGTCTGGCGTTAATCATGTCCTGATCTTCGAGCTGGA
TCCGCGAAATCATCTATCCGAGCAGCATCTCATGGAACTGGCGGCGATCT
TCGGCGTGATCTGGACACTCAGCATGCTGAGCTTTCTGTACAGCGCTAGC
TTGGCCATTCCGGCTTTCATCAATCCACTTACGCTTACGCTGATTATGGT
GCTGTTTTTGGCAAATCCGTTTCATGTGCTCTATCACGACGCACGATTCT
GGCTGTGGCGGATTACGGGACGATGTGTGTCGGCACCGTTCTTTCACGTG
GGCTTCGCGGATTTCTGGCTCGGCGATCAACTCAATTCGCTGGCCACGGC
TATCCTAGATTTCGAGTATCTCATATGCTTCTATTTCACAAATGGCAACT
GGACGGAGGCGAGGGATGCCTCCATTTGCATGGAGAAGGACTTTATCATC
CGGCCGATTGTTAATTGCCTGCCCGCCTGGTTTCGATTTGCACAATGCCT
GCGTCGATATCGCGACTCGCGGGAGGCATTTCCTCATTTGGTGAATGCTG
GCAAATACTCCACAACCTTCATGGTGGTGATCTTCGCCACGCTCAAGAGC
TTTCACAGTCCGAACTATGCCAGCACATTCGATAATCCCTATACCTGGTT
GTGGATTATCGCCTCGATTGTGTCCTCTTGCTACGCCTACACGTGGGATA
TCAAAATGGATTGGGGTCTGTTCGACAAGAACGCCGGCGAGAATACTTTC
CTGCGCGAGGAGGTTGTCTACTCATCGACGGGTTTTTACTACTTTGCCAT
TTTGGAGGATCTGGCGCTGCGCTTTATTTGGGCGCTGTCTTTCTACCTCA
CCGAGATGAAAATCGTTAGCTCAGACATAATGACCTCCGTCACAGGCATT
CTGGAGGTATTCCGTCGCTTTGTGTGGAACTTTTTCCGGTTGGAGAACGA
GCATCTGAACAACTGCGGTAAGTTCCGAGCCGTTCGTGACATCTCGATAG
CGCCGCTGGACTCCTCCGACCAGGCGCTCATCCTGCGCCTGATGGACGAG
GCTGACGGTGTGATCAATCGCTACACGAAGGCGAACCGACCTAAGCCCAA
GAAGGTTAAGGATCCGGAGAAGCGGAGCCTGCTGCAGACACGCGGATCGC
TGCCCGATCTCAGGATCGATATGGACAGTAAAAAATTGTAGAAGCTTTCT
AGACCAT

BS10433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 2025 CG7536-PD 1..2025 17..2041 10125 100 Plus
CG7536-RC 2025 CG7536-PC 1..2025 17..2041 10125 100 Plus
CG7536-RA 2025 CG7536-PA 1..2025 17..2041 10125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-RD 3537 CG7536-RD 721..2746 16..2041 10130 100 Plus
CG7536-RC 3494 CG7536-RC 306..2331 16..2041 10130 100 Plus
CG7536-RA 3019 CG7536-RA 357..2382 16..2041 10130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18080416..18081391 1460..485 4880 100 Minus
X 23542271 X 18081743..18082143 484..84 2005 100 Minus
X 23542271 X 18079654..18079931 2041..1764 1390 100 Minus
X 23542271 X 18080187..18080357 1631..1461 855 100 Minus
X 23542271 X 18079993..18080127 1764..1630 675 100 Minus
3L 28110227 3L 5919889..5920445 942..383 420 72.5 Minus
X 23542271 X 18082218..18082288 86..16 355 100 Minus
3L 28110227 3L 5920582..5920753 255..84 290 77.9 Minus
3L 28110227 3L 5921136..5921209 86..13 265 90.5 Minus
3L 28110227 3L 5918754..5918856 1631..1529 230 81.6 Minus
Blast to na_te.dros performed on 2014-11-26 16:20:37 has no hits.

BS10433.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:23 Download gff for BS10433.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 1..2025 17..2041 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:54 Download gff for BS10433.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RB 259..2286 16..2045 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:27 Download gff for BS10433.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 358..2382 17..2041 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:07 Download gff for BS10433.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RB 260..2284 17..2041 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:50 Download gff for BS10433.complete
Subject Subject Range Query Range Percent Splice Strand
CG7536-RA 358..2382 17..2041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:50 Download gff for BS10433.complete
Subject Subject Range Query Range Percent Splice Strand
X 18082219..18082287 17..85 100   Minus
X 18079654..18079930 1765..2041 100 <- Minus
X 18079993..18080126 1631..1764 100 <- Minus
X 18080188..18080357 1461..1630 100 <- Minus
X 18080416..18081391 485..1460 100 <- Minus
X 18081743..18082141 86..484 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:27 Download gff for BS10433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17973687..17973963 1765..2041 100 <- Minus
arm_X 17974026..17974159 1631..1764 100 <- Minus
arm_X 17974221..17974390 1461..1630 100 <- Minus
arm_X 17974449..17975424 485..1460 100 <- Minus
arm_X 17975776..17976174 86..484 100 <- Minus
arm_X 17976252..17976320 17..85 100   Minus

BS10433.pep Sequence

Translation from 16 to 2040

> BS10433.pep
MKFAEHLSAHITPEWRKQYINYEEMKAMLYLAVEEAPSVESVEDDVLKRH
FANFDENFFHYCDKELKKINTFYSEKLAEATRKFATLNAELKTSIEESER
SAKKSKGHKRHAALPDRKARELKLAFSEFYLSLILLQNYQNLNHTGFRKI
LKKHDKLLRVDTGAKWRQEYVEASHFFTNKDIDNIINETETTVTGELEGG
DRQRAMKRLRVPPLGEQQSPWTTFKVGLFSGSFIVLVIVVVVSAIFHEIS
GENLKVTFRLYRGPLLIIEFIFLIGVNIYGWRSSGVNHVLIFELDPRNHL
SEQHLMELAAIFGVIWTLSMLSFLYSASLAIPAFINPLTLTLIMVLFLAN
PFHVLYHDARFWLWRITGRCVSAPFFHVGFADFWLGDQLNSLATAILDFE
YLICFYFTNGNWTEARDASICMEKDFIIRPIVNCLPAWFRFAQCLRRYRD
SREAFPHLVNAGKYSTTFMVVIFATLKSFHSPNYASTFDNPYTWLWIIAS
IVSSCYAYTWDIKMDWGLFDKNAGENTFLREEVVYSSTGFYYFAILEDLA
LRFIWALSFYLTEMKIVSSDIMTSVTGILEVFRRFVWNFFRLENEHLNNC
GKFRAVRDISIAPLDSSDQALILRLMDEADGVINRYTKANRPKPKKVKDP
EKRSLLQTRGSLPDLRIDMDSKKL*

BS10433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7536-PD 674 CG7536-PD 1..674 1..674 3540 100 Plus
CG7536-PC 674 CG7536-PC 1..674 1..674 3540 100 Plus
CG7536-PA 674 CG7536-PA 1..674 1..674 3540 100 Plus
CG7536-PB 674 CG7536-PB 1..674 1..674 3540 100 Plus
CG10483-PA 671 CG10483-PA 1..669 1..665 2183 62.4 Plus