Clone BS10434 Report

Search the DGRC for BS10434

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG3409-RA
Protein status:BS10434.pep: full length peptide match
Sequenced Size:2717

Clone Sequence Records

BS10434.complete Sequence

2717 bp assembled on 2009-12-07

GenBank Submission: KX802323

> BS10434.complete
GAAGTTATCAGTCGACATGGCCAAGCTAGCGACGGATCCAAACGCCTCCA
ACAACAACAGCTGCGAGGCGGTTAACAACAACCACAATGGCCAGAACCAG
AGCCAAAACGGAGGCGCCTCCAATTACCAGGCCCTGCCTCTTACGCCTGC
TCCGGCCAACACGCCACTCCACAAGGCCATCAAGCACGACCTCTTCCCGG
AGGTCACCTTCTGCAACCTCTCCGTAGAGGAGCTCGCAGATGGGGCTGGA
CACAGCCGTGTGGTAAGGAGCAGTGTCATCGAACTGGAGGACGGCACCAT
GACGTGCCTGATGAACGGAAATGGGCAGGTGAAGCGTCGCAAACGCCTGA
TCTCGAACGAGTCCGGCGACTCGATCGACTCCAGTTCCACGGAGAAGAAA
ACGCCCAAGATGCCCGACGGTGGATATGGGTGGGTGGTGGTGTTCGCCTC
TCTGGTCGTGTCCCTTATAGCCGACGGACTGAGCTTCTCATTTGGCCTAA
TAAACGTGGAACTGCTGGAATACTTCGGAGAGTCCACTTCGAAGACCGCC
TGGATATCCTCGCTATTCTTCTCCGTGCCCCTGTTGATGGGACCCATCTG
GTCCAATCTGGTGGACAAGTACGGCTGCCGAAAGATGACCATCCTCGGCG
GAGTGGTCTCTGCCTTTGGGTTTGCTCTGTCTTCGTTTTGCAACTCGATC
GAGATGCTCATGGTGACCTTTGGTATCATTTCGGGACTGGGCCTAGGCAT
CGGGTATGTGACCGCGGTGGTGTCCATTGCATTCTGGTTTGACAAGAAGC
GCACCTTTGCGACCGGCATCGGAGCATCGGGCACCGGCATCGGGACCTTT
GTCTACGCCCGCCTTACTTCCTATCTAATCGAATCGTACGGCTGGCGCGG
AGCCACTCTAATCCTTGGCGGCACCATGCTCAACGCATGCGTTTGCGGCG
CCCTCATGCGCGATCCCGACTGGCTGATCGAGGAAAACCGTCTAGAGAGT
CGATCCCAAAGCGTCACCACCTTCTCGAACTCCAGTGTCTGCCTGGAGGA
AATAAAAAAGCTGCTGGACACCGGCATCACAAAGGAGGCTGTGCTAGACT
CGTTGGTGACCAAGAACAACACGGAGGCCAACCAGCAGATTGACGATCCG
TTGGACTCCGCTCTCAAGCGCTACCGCAGCGAGATCTTCCTGCCCACCTT
CCTGAGCACTCAGGAGCTTGACAGCATCTGCGAGGTTAAGAGCCTGAGCC
GACGCTCCCTACGCCACAAGGAGGGTGAGGAGGCGCCGTCACGAGAGAAC
CTGCTGTCCATGTCCTCAGGAGCAGGTGCCTATCCCCCATCGACGGCCGT
TATAGGCTCGCCAGATGATACCCTAATGGGCGGAATAGCTCACGAGGCGG
CAGAGGAAGCAAAGAAGGCCTATCTGGCCTCCATCGAGACGCTGTCTCCA
TCGGAAAAGCGCTCCACTGGTAGGACTCCCAATGGCTCGCTCCGCTCCTC
GGACGAAGGCTACCTTACGCAGAAGCACGCCAGCTCCCGGTACTCGCTTA
ACGAAAACATCTTCATGGCCAAGCATACAACACCATCAATCTCCAACCTA
AAGGTGAATGGCCTGCGACACAATTCGGTGGACATCTTGAGCGAGGACAT
GCACTGCTACTACTCGAAGGACGAGACCTTCGCATTGCTGGAGCCGAGCA
GGCGCATCAGGCCCACCGTCATCGCCATTCCGGAACAGGAGCAGTCGGTG
AACAGCGAGCTGGCCACCCGTCGCGCACGCCTGGACAGCATCACGGGAAT
CCGCCGGCTGTCGCGCTCCAAGAAGCCCAGCCACCACCGATCGAACCTCC
GCCGCAACATCTCGATCCGGAACTCCAACTTCCTTAAGGATATGCGCATT
CACCGCAACTCGATCCACTACCGCGGGGCCATGCTGAACACGCACCGCTA
CCGGCTGCGCGCCTCCTCCTGTCCCAACATCTACCGCAACTCGATGACCA
CCATCGCCAAAGAGGAGGAAGATACCTGGTATGACAACTTTGTGGACACC
ATGAAGTCCATCTTTGACTTTTCACTCTTTCTGGACATGAAGTTCGCCCT
CTTCAATCTCTCTACATTGTTTTTGTTCATTTGGTTCATTATCCCCTATC
TGTACCTTCCCGATTACATGAAGCAATACAAGTACGACGTGAGCCAGAGT
GCCGAGTTGATTTCGGATGTCGGCATTGCCCAAACGGTGGGCATGATAGG
ACTTGGCTATCTGGGGGATCTGTCCTGGATGAACATCAATATATGCTACT
CGCTGTGCATGCTGGTGTGCGGAGCGTCTGTGTTCTTCATGCCCCTGCTG
ATTACCAACTACATGGGCCTGATGGTCATGTGCGTTATTTTCGGATTTAC
GTTCGCCAGCTCCTTCTCGTTTACGCCCAGCATTCTGGTCAGTATTGTGG
ATCTGGACGATTTCACGTGTGCCTACGGTCTGGTGCTGCTGGTTCAGGGA
GTTGGAATGATCGCAGGACCCCCTATTGCAGGCGTCATATACGAGTATAC
GGGCAGATGGGATGACACCTTCTATTATGCTGGAATATTTATCGCACTCT
CTGGTGTCTGTTCGTATCTGATCGAGTTCTGTGAAAAGAAAGCACCTAAG
GAGAGTGATAGTGATGTCTTAGAGACTAAAAAAGCTCAACTTTTACACTA
GAAGCTTTCTAGACCAT

BS10434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-RC 2685 CG3409-PC 1..2685 17..2701 13425 100 Plus
CG3409-RB 2685 CG3409-PB 1..2685 17..2701 13425 100 Plus
CG3409-RA 2685 CG3409-PA 1..2685 17..2701 13425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG45092-RF 5152 CG45092-RF 1486..4174 13..2701 13445 100 Plus
CG45092-RE 4496 CG45092-RE 1356..4044 13..2701 13445 100 Plus
CG45092-RD 5083 CG45092-RD 1943..4631 13..2701 13445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6702387..6704397 2023..13 10055 100 Minus
2R 25286936 2R 6700882..6701123 2556..2315 1210 100 Minus
2R 25286936 2R 6701190..6701372 2315..2133 915 100 Minus
2R 25286936 2R 6700673..6700820 2701..2554 740 100 Minus
2R 25286936 2R 6701811..6701922 2135..2024 560 100 Minus
Blast to na_te.dros performed 2014-11-28 02:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1587 26..115 126 60 Plus

BS10434.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:05 Download gff for BS10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1920..4604 17..2701 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:04 Download gff for BS10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1947..4631 17..2701 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:49 Download gff for BS10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1920..4604 17..2701 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:36 Download gff for BS10434.complete
Subject Subject Range Query Range Percent Splice Strand
CG45092-RD 1947..4631 17..2701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:36 Download gff for BS10434.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6701813..6701922 2024..2133 100 <- Minus
2R 6701190..6701371 2134..2315 100 <- Minus
2R 6700673..6700817 2557..2701 100 <- Minus
2R 6700882..6701122 2316..2556 100 <- Minus
2R 6702387..6704393 17..2023 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:04 Download gff for BS10434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2588178..2588322 2557..2701 100 <- Minus
arm_2R 2588387..2588627 2316..2556 100 <- Minus
arm_2R 2588695..2588876 2134..2315 100 <- Minus
arm_2R 2589318..2589427 2024..2133 100 <- Minus
arm_2R 2589892..2591898 17..2023 100   Minus

BS10434.3prime Sequence

981 bp (827 high quality bases) assembled on 2006-04-19

> BS10434.3prime
ATGGTCTAGAAAGCTTCTAGTGTAAAAGTTGAGCTTTTTTAGTCTCTAAG
ACATCACTATCACTCTCCTTAGGTGCTTTCTTTTCACAGAACTCGATCAG
ATACGAACAGACACCAGAGAGTGCGATAAATATTCCAGCATAATAGAAGG
TGTCATCCCATCTGCCCGTATACTCGTATATGACGCCTGCAATAGGGGGT
CCTGCGATCATTCCAACTCCCTGAACCAGCAGCACCAGACCGTAGGCACA
CGTGAAATCGTCCAGATCCACAATACTGACCAGAATGCTGGGCGTAAACG
AGAAGGAGCTGGCGAACGTAAATCCGAAAATAACGCACATGACCATCAGG
CCCATGTAGTTGGTAATCAGCAGGGGCATGAAGAACACAGACGCTCCGCA
CACCAGCATGCACAGCGAGTAGCATATATTGATGTTCATCCAGGACAGAT
CCCCCAGATAGCCAAGTCCTATCATGCCCACCGTTTGGGCAATGCCGACA
TCCGAAATCAACTCGGCACTCTGGCTCACGTCGTACTTGTATTGCTTCAT
GTAATCGGGAAGGTACAGATAGGGGATAATGAACCAAATGAACAAAAACA
ATGTAGAGAGATTGAAGAGGGCGAACTTCATGTCCAGAAAGAGTGAAAAG
TCAAAGATGGACTTCATGGTGTCCACAAAGTTGTCATACCAGGTATCTTC
CTCCTCTTTGGCGATGGTGGTCATCGAGTTGCGGTAGATGTTGGGACAGG
AGGAGGCGCGCAGCCGGTAGCGGTGCGTGTTCAGCATGGCCCCGCGGTAG
TGGATCGAGTTGCGGTGAATGCGCATATCCTTAAGGAAGTTGGAGTTCCG
GATCGAGATGTTGCGGGCGAAGGTCGATCGGTGGTGGCTGGGCTTCTTGG
AGCGCGACAGCCGGCGGATTCCCGTGATGCTGTCCAGGCGTGCGCGACGG
GTGGCCAGCTCGCTGGTCACCGACTGCTCCT

BS10434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-PA 2685 CG3409-RA 1836..2685 866..17 4250 100 Minus
CG3409-PA 2685 CG3409-RA 1721..1828 981..874 515 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG45092-RF 5152 CG45092-RF 3210..4174 981..17 4750 99.6 Minus
CG45092-RE 4496 CG45092-RE 3080..4044 981..17 4750 99.6 Minus
CG45092-RD 5083 CG45092-RD 3667..4631 981..17 4750 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6702387..6702673 695..981 1360 98.3 Plus
2R 25286936 2R 6700882..6701123 162..403 1210 100 Plus
2R 25286936 2R 6701190..6701372 403..585 915 100 Plus
2R 25286936 2R 6700673..6700820 17..164 740 100 Plus
2R 25286936 2R 6701811..6701922 583..694 560 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:33:30 has no hits.

BS10434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:53 Download gff for BS10434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1721..2685 17..981 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:38 Download gff for BS10434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1721..2685 17..981 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:48:48 Download gff for BS10434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 3667..4637 8..981 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:40 Download gff for BS10434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45092-RD 3667..4637 8..981 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:40 Download gff for BS10434.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6701813..6701922 585..694 100 <- Plus
2R 6701190..6701371 403..584 100 <- Plus
2R 6700667..6700817 8..161 97 <- Plus
2R 6700882..6701122 162..402 100 <- Plus
2R 6702387..6702673 695..981 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:48:48 Download gff for BS10434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2588695..2588876 403..584 100 <- Plus
arm_2R 2588172..2588322 8..161 97 <- Plus
arm_2R 2588387..2588627 162..402 100 <- Plus
arm_2R 2589318..2589427 585..694 100 <- Plus
arm_2R 2589892..2590178 695..981 98   Plus

BS10434.5prime Sequence

873 bp (872 high quality bases) assembled on 2006-04-19

> BS10434.5prime
GAAGTTATCAGTCGACATGGCCAAGCTAGCGACGGATCCAAACGCCTCCA
ACAACAACAGCTGCGAGGCGGTTAACAACAACCACAATGGCCAGAACCAG
AGCCAAAACGGAGGCGCCTCCAATTACCAGGCCCTGCCTCTTACGCCTGC
TCCGGCCAACACGCCACTCCACAAGGCCATCAAGCACGACCTCTTCCCGG
AGGTCACCTTCTGCAACCTCTCCGTAGAGGAGCTCGCAGATGGGGCTGGA
CACAGCCGTGTGGTAAGGAGCAGTGTCATCGAACTGGAGGACGGCACCAT
GACGTGCCTGATGAACGGAAATGGGCAGGTGAAGCGTCGCAAACGCCTGA
TCTCGAACGAGTCCGGCGACTCGATCGACTCCAGTTCCACGGAGAAGAAA
ACGCCCAAGATGCCCGACGGTGGATATGGGTGGGTGGTGGTGTTCGCCTC
TCTGGTCGTGTCCCTTATAGCCGACGGACTGAGCTTCTCATTTGGCCTAA
TAAACGTGGAACTGCTGGAATACTTCGGAGAGTCCACTTCGAAGACCGCC
TGGATATCCTCGCTATTCTTCTCCGTGCCCCTGTTGATGGGACCCATCTG
GTCCAATCTGGTGGACAAGTACGGCTGCCGAAAGATGACCATCCTCGGCG
GAGTGGTCTCTGCCTTTGGGTTTGCTCTGTCTTCGTTTTGCAACTCGATC
GAGATGCTCATGGTGACCTTTGGTATCATTTCGGGACTGGGCCTAGGCAT
CGGGTATGTGACCGCGGTGGTGTCCATTGCATTCTGGTTTGACAAGAAGC
GCACCTTTGCGACCGGCATCGGAGCATCGGGCACCGGCATCGGGACCTTT
GTCTACGCCCGCCTTACTTCCTA

BS10434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-PA 2685 CG3409-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG45092-RF 5152 CG45092-RF 1486..2346 13..873 4305 100 Plus
CG45092-RE 4496 CG45092-RE 1356..2216 13..873 4305 100 Plus
CG45092-RD 5083 CG45092-RD 1943..2803 13..873 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6703537..6704397 873..13 4305 100 Minus
Blast to na_te.dros performed 2015-02-11 09:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1587 26..115 126 60 Plus
invader2 5124 invader2 INVADER2 5124bp 677..747 43..116 111 63.5 Plus

BS10434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:54 Download gff for BS10434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:39 Download gff for BS10434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:55:28 Download gff for BS10434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3409-RA 1943..2802 13..872 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:47 Download gff for BS10434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG45092-RD 1943..2802 13..872 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:47 Download gff for BS10434.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6703538..6704397 13..872 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:55:28 Download gff for BS10434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2591043..2591902 13..872 100   Minus

BS10434.pep Sequence

Translation from 16 to 2700

> BS10434.pep
MAKLATDPNASNNNSCEAVNNNHNGQNQSQNGGASNYQALPLTPAPANTP
LHKAIKHDLFPEVTFCNLSVEELADGAGHSRVVRSSVIELEDGTMTCLMN
GNGQVKRRKRLISNESGDSIDSSSTEKKTPKMPDGGYGWVVVFASLVVSL
IADGLSFSFGLINVELLEYFGESTSKTAWISSLFFSVPLLMGPIWSNLVD
KYGCRKMTILGGVVSAFGFALSSFCNSIEMLMVTFGIISGLGLGIGYVTA
VVSIAFWFDKKRTFATGIGASGTGIGTFVYARLTSYLIESYGWRGATLIL
GGTMLNACVCGALMRDPDWLIEENRLESRSQSVTTFSNSSVCLEEIKKLL
DTGITKEAVLDSLVTKNNTEANQQIDDPLDSALKRYRSEIFLPTFLSTQE
LDSICEVKSLSRRSLRHKEGEEAPSRENLLSMSSGAGAYPPSTAVIGSPD
DTLMGGIAHEAAEEAKKAYLASIETLSPSEKRSTGRTPNGSLRSSDEGYL
TQKHASSRYSLNENIFMAKHTTPSISNLKVNGLRHNSVDILSEDMHCYYS
KDETFALLEPSRRIRPTVIAIPEQEQSVNSELATRRARLDSITGIRRLSR
SKKPSHHRSNLRRNISIRNSNFLKDMRIHRNSIHYRGAMLNTHRYRLRAS
SCPNIYRNSMTTIAKEEEDTWYDNFVDTMKSIFDFSLFLDMKFALFNLST
LFLFIWFIIPYLYLPDYMKQYKYDVSQSAELISDVGIAQTVGMIGLGYLG
DLSWMNINICYSLCMLVCGASVFFMPLLITNYMGLMVMCVIFGFTFASSF
SFTPSILVSIVDLDDFTCAYGLVLLVQGVGMIAGPPIAGVIYEYTGRWDD
TFYYAGIFIALSGVCSYLIEFCEKKAPKESDSDVLETKKAQLLH*

BS10434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3409-PC 894 CG3409-PC 1..894 1..894 4615 100 Plus
CG3409-PB 894 CG3409-PB 1..894 1..894 4615 100 Plus
CG3409-PA 894 CG3409-PA 1..894 1..894 4615 100 Plus
Mct1-PB 626 CG3456-PB 3..211 102..315 490 43.5 Plus
Mct1-PA 626 CG3456-PA 3..211 102..315 490 43.5 Plus
Mct1-PB 626 CG3456-PB 412..615 677..881 376 37.1 Plus