Clone Sequence Records
BS10436.complete Sequence
2891 bp assembled on 2009-12-07
GenBank Submission: KX804209
> BS10436.complete
GAAGTTATCAGTCGACATGGCCGTTAGCAATATTGTCTGCGAGTGGCTAA
GAGCTTTGGGCCTGGCCCAATACGCCGAGAGCTTCCTGGACAATGGCTAC
GACGACCTGGAGATCTGTAAACAGGTCGGTGATCCCGATCTAGATGCCAT
CGGCGTCGAGAATCCTGCCCATAGACACAAGCTGCTCAAGAGCATCCGAT
CGCTGAGGGAAAAGGGCGCCGCATCCGTTTACTTTATGCTCAACGATCCC
AACTCGCTCTCGGGCAGCATGGAGATCCTCTGCGAAACACCACCCAACAA
CGAACTGGAGCTCGTCCTGCGGGAGCAGCTAGAGACGGACGGAGTCCGGC
TGACCGCGCATCCATACTCAACACCGCCCTCGAGTTGTCTGTCCGACAAG
GAGGAGGATGAGATTTACGGATTCGGCTATGGCGTCTTCGCACCCCGCGT
GGCCAGAGGAGGGTTAACACAACAGCAACAGCTGCTGCAGCAGCAGACGC
TGCAAACGCAACAGAGCATACAGCAACAGCAGCAGCAGATGCAACAGCAG
CAGCAACAGTTACCAATTGTGCCAGGACAACAGCAGCAAGGACCTCATCA
GCATCAGACCCTGCCACCGAATGTCGCGCATTTGAACTTTGTGCAGCAAA
ACTGCCTGAGTCCGCGCTCAGCTTATTTCTACGAATTTCCACCGACAGCT
GAGGGCCGCGAGACAAAGAAACGCACCACACTGGCCCGGCTGCTGAAAGG
CTTGAAGACTGTCAATCGACGGGATCGGAACAATCAACAGAATGGCGCCC
AGGCCAGGGCGGCTAACGATCGTCTGCGGCACTTTCAAATGATAAACGGC
GGCGCCGGCGGACAGCAGCACAGTTTCGAGGAGACAATCCACAGGTTGAA
AGTACAAGAGGCCATGCGGAAAAAGGAAAAATTTCAACGTGAACACGAGG
AGATCCTGCGTGATATTCGACAGGGACTGTTGCAAATGAGTCGCGGCGAA
GGACGCATGGACGATACGTATATGTACGACGAGGCGCTGAGAACGGGTGG
CGGTATGGGCATCGCCGGACTGGGCATGCCACTCGGTGTGGGCGGCAATG
GTGGCGGCGGGGGAGCAGCCCATTATGCGGTGAGTGCGCTGCATCATCAA
GGTCATTGGTACGACGAGCCGCCCTACGAAAGCGATCCCGATGACTTTCT
TATGGCCGGGCTCAACTGCGGACCAGCTGCCACAATTCAGGGTGGCCGTG
TGCGCTTCTCGAACAACCGCGAGAGCACAGGCGTAATTTCATTAAGATCC
GCCGGAGATATTTCATTGCCGCAACGTGGACCGCCGCGTAGAGGTCTTAT
CGTGCCGCAGCAGCCGCCAAATCCACCGACAATAATACCCTTAACGCACG
CCAGATCTCATGATCGCGAAAGCGGCGACTACGCGGGCTCCATCTCAGAT
CTACAAAGCGTTACCTCCAGATTCAGTACGGTGTCGATTGGCACCAACAA
CTGCACGGCCCGCTATCGAACCCTAAGCGGTGGAATTGGGGAATCACCAT
CGCTGTCGCCCAGTCCATCGTCGGATTACGAGGACATCGGAGTGACCAGG
GGCCACGGATGTCTACCGCCCAGCCTGCTGGCCGCTAAGGCCAAAAAGAA
CGGACTGCCGCACGGCAAGGCGAACACCATTTGCCAAAAGGCCACGGTGC
ATCATTCGGGCGAGATGCGTAGCTCGGCAAAGGAAATTGGCGCATTTAAT
GAGAATGGACGAAACTTTGTTGCCACAAAGGATACGTCGAGGGATTTCAG
CAATTCCCAAGATAATACCGACCGTGGCAGCATGAGCGATCAGGCGTTCG
CCTGTTCGGCCAGCTCCGTGGAAAGTTTGCCCAGCGCATCCGGTTCGAGC
ACCCAGGCTCTGGTTCGTCCTGGCAGTCCGCACAGCTCGATTTCGGCCGA
GGATCGCACCTCGATGGCCAGCTGCATCTGCAAGGCCAAGGCTCTCGTGG
ATAGTTTGCCCAATCCCTACGATAAGGAGGCACTCAAATTCAAGAAGGGC
GACCTTATCGATGTGCTGTCGATGAACGCCTCGGGCATTTGGAAGGGTCG
ATGCCACGGCCGCGTGGGCCACTTCAAGTTCATCAACGTGGAGGTGCTGC
CGGAGCAGCGAATGAAGAACTCCAGCAGCAAGACCCTGGCCGCCGGCTCG
CGTTTGGCTAATTCTGGAAATGGCAGCCACAATGGTGGACCCTGCTCCGT
GGAGGACCTGCTAATTCGCATTGGACTCAAGGAGTACACCTCCGTCTTTG
TGCTCAACGGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCT
GACCTGGATTACCTGGGCATTCTCAACCAGGAACATCGTGCCAAGCTGCT
GACGGCTGTGCAACTGCTGCATGACATTGAATGCTCCGATGTGGATATAC
CCGGATCCAGCTCGGAAAATGATGAAGCCCGCCTGAACAACATCAATATG
AAGCATGGAGCATCGCCCTTTGGTCGACGCCACTTTCCCCGCGACTCTGG
ATGCTACGAGGGATCCCCGCTACCCAGCTCACAGACACCTACCCAGGCGG
TAAACTCGACGGACGAGTCGAACAGCTTGGACGACGTGGTGACCAAGTGT
TCCAGTGAAATTATGAAGCGCGTGGAGAGCGCCCGCCGTTGCAAGGACAA
TCCGTTCAAAACCACTCTGCCCGGCGGAGGACGACTGGGCAAGAAGTCCT
TTCTCGGCGGCAACGGCCTTATGGCGGACGATACGCTCACGCGTGGAGGG
CTTAGCGAGAAGTCGAGCGATTCGGGGGTCAGCAGCAGTTCGCTATCGTC
GGGTCCGCTGAAGAGCAGCACTTAAAAGCTTTCTAGACCAT
BS10436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SKIP-RI | 3243 | CG31163-PI | 1..2859 | 17..2875 | 14295 | 100 | Plus |
| SKIP-RB | 2859 | CG31163-PB | 1..2859 | 17..2875 | 14295 | 100 | Plus |
| SKIP-RF | 3195 | CG31163-PF | 695..3195 | 375..2875 | 12505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SKIP-RI | 5049 | CG31163-RI | 1158..4018 | 15..2875 | 14305 | 100 | Plus |
| SKIP-RB | 5049 | CG31163-RB | 1158..4018 | 15..2875 | 14305 | 100 | Plus |
| SKIP-RF | 6584 | CG31163-RF | 1859..4359 | 375..2875 | 12505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22293459..22293901 | 2433..2875 | 2215 | 100 | Plus |
| 3R | 32079331 | 3R | 22174366..22174727 | 15..376 | 1810 | 100 | Plus |
| 3R | 32079331 | 3R | 22278351..22278626 | 376..651 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 22292611..22292878 | 2043..2310 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 22285471..22285702 | 1010..1241 | 1160 | 100 | Plus |
| 3R | 32079331 | 3R | 22290077..22290296 | 1486..1705 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 22291162..22291355 | 1706..1899 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 22287794..22287960 | 1238..1404 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 22292313..22292458 | 1899..2044 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 22292949..22293072 | 2310..2433 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 22279228..22279336 | 701..809 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 22280798..22280889 | 808..899 | 445 | 98.9 | Plus |
| 3R | 32079331 | 3R | 22289477..22289561 | 1402..1486 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 22284876..22284935 | 951..1010 | 300 | 100 | Plus |
| 3R | 32079331 | 3R | 22281846..22281903 | 895..952 | 290 | 100 | Plus |
| 3R | 32079331 | 3R | 22318569..22318706 | 165..28 | 285 | 80.4 | Minus |
| 3R | 32079331 | 3R | 22278706..22278755 | 652..701 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:47:55 has no hits.
BS10436.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:08 Download gff for
BS10436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31163-RB | 1137..3993 | 17..2873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:07 Download gff for
BS10436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1160..4016 | 17..2873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:48 Download gff for
BS10436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31163-RB | 1137..3993 | 17..2873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:31 Download gff for
BS10436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1160..4016 | 17..2873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:31 Download gff for
BS10436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22292950..22293071 | 2311..2432 | 100 | -> | Plus |
| 3R | 22292613..22292878 | 2045..2310 | 100 | -> | Plus |
| 3R | 22293459..22293899 | 2433..2873 | 100 | | Plus |
| 3R | 22292313..22292458 | 1899..2044 | 100 | -> | Plus |
| 3R | 22174368..22174727 | 17..376 | 100 | -> | Plus |
| 3R | 22278352..22278626 | 377..651 | 100 | -> | Plus |
| 3R | 22278706..22278755 | 652..701 | 100 | -> | Plus |
| 3R | 22279229..22279335 | 702..808 | 100 | -> | Plus |
| 3R | 22280799..22280885 | 809..895 | 100 | -> | Plus |
| 3R | 22281847..22281903 | 896..952 | 100 | -> | Plus |
| 3R | 22284878..22284935 | 953..1010 | 100 | -> | Plus |
| 3R | 22285472..22285701 | 1011..1240 | 100 | -> | Plus |
| 3R | 22287797..22287960 | 1241..1404 | 100 | -> | Plus |
| 3R | 22289480..22289561 | 1405..1486 | 100 | -> | Plus |
| 3R | 22290078..22290296 | 1487..1705 | 100 | -> | Plus |
| 3R | 22291162..22291354 | 1706..1898 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:07 Download gff for
BS10436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18118035..18118180 | 1899..2044 | 100 | -> | Plus |
| arm_3R | 18111194..18111423 | 1011..1240 | 100 | -> | Plus |
| arm_3R | 18113519..18113682 | 1241..1404 | 100 | -> | Plus |
| arm_3R | 18000090..18000449 | 17..376 | 100 | -> | Plus |
| arm_3R | 18104074..18104348 | 377..651 | 100 | -> | Plus |
| arm_3R | 18104428..18104477 | 652..701 | 100 | -> | Plus |
| arm_3R | 18104951..18105057 | 702..808 | 100 | -> | Plus |
| arm_3R | 18106521..18106607 | 809..895 | 100 | -> | Plus |
| arm_3R | 18107569..18107625 | 896..952 | 100 | -> | Plus |
| arm_3R | 18110600..18110657 | 953..1010 | 100 | -> | Plus |
| arm_3R | 18115202..18115283 | 1405..1486 | 100 | -> | Plus |
| arm_3R | 18115800..18116018 | 1487..1705 | 100 | -> | Plus |
| arm_3R | 18116884..18117076 | 1706..1898 | 100 | -> | Plus |
| arm_3R | 18118335..18118600 | 2045..2310 | 100 | -> | Plus |
| arm_3R | 18118672..18118793 | 2311..2432 | 100 | -> | Plus |
| arm_3R | 18119181..18119621 | 2433..2873 | 100 | | Plus |
BS10436.3prime Sequence
871 bp (769 high quality bases) assembled on 2006-04-19
> BS10436.3prime
ATGGTCTAGAAAGCTTTTAAGTGCTGCTCTTCAGCGGACCCGACGATAGC
GAACTGCTGCTGACCCCCGAATCGCTCGACTTCTCGCTAAGCCCTCCACG
CGTGAGCGTATCGTCCGCCATAAGGCCGTTGCCGCCGAGAAAGGACTTCT
TGCCCAGTCGTCCTCCGCCGGGCAGAGTGGTTTTGAACGGATTGTCCTTG
CAACGGCGGGCGCTCTCCACGCGCTTCATAATTTCACTGGAACACTTGGT
CACCACGTCGTCCAAGCTGTTCGACTCGTCCGTCGAGTTTACCGCCTGGG
TAGGTGTCTGTGAGCTGGGTAGCGGGGATCCCTCGTAGCATCCAGAGTCG
CGGGGAAAGTGGCGTCGACCAAAGGGCGATGCTCCATGCTTCATATTGAT
GTTGTTCAGGCGGGCTTCATCATTTTCCGAGCTGGATCCGGGTATATCCA
CATCGGAGCATTCAATGTCATGCAGCAGTTGCACAGCCGTCAGCAGCTTG
GCACGATGTTCCTGGTTGAGAATGCCCAGGTAATCCAGGTCAGCGGGCTC
CAGTTCCTTGAACAGTTCCAGGTCCTCGTAGCCGTTGAGCACAAAGACGG
AGGTGTACTCCTTGAGTCCAATGCGAATTAGCAGGTCCTCCACGGAGCAG
GGTCCACCATTGTGGCTGCCATTTCCAGAATTAGCCAAACGCGAGCCGGC
GGCCAGGGTCTTGCTGCTGGAGTTCTTCATTCGCTGCTCCGGCAGCACCT
CCACGTTGATGAACTTGAAGTGGCCCACGCGGCCGTGGCATCGACCCTTC
CAAATGCCCGAGGCGTTCATCGACAGCACATCGATAAGGTCGCCCTTCTT
GAATTTGAGTGCCTCCTTATC
BS10436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31163-PB | 2859 | CG31163-RB | 2005..2859 | 871..17 | 4275 | 100 | Minus |
| CG31163-PD | 3171 | CG31163-RD | 2317..3171 | 871..17 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SKIP-RF | 6584 | CG31163-RF | 3505..4359 | 871..17 | 4275 | 100 | Minus |
| SKIP-RJ | 6669 | CG31163-RJ | 3590..4444 | 871..17 | 4275 | 100 | Minus |
| SKIP-RE | 5788 | CG31163-RE | 3500..4354 | 871..17 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22293459..22293901 | 459..17 | 2215 | 100 | Minus |
| 3R | 32079331 | 3R | 22292611..22292878 | 849..582 | 1340 | 100 | Minus |
| 3R | 32079331 | 3R | 22292949..22293072 | 582..459 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:32:21 has no hits.
BS10436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:57 Download gff for
BS10436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31163-PA | 1483..2337 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:43 Download gff for
BS10436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31163-PD | 2317..3171 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:48:42 Download gff for
BS10436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RE | 3500..4359 | 10..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:08 Download gff for
BS10436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RE | 3500..4359 | 10..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:08 Download gff for
BS10436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22292435..22292458 | 848..871 | 100 | -> | Minus |
| 3R | 22292613..22292878 | 582..847 | 100 | -> | Minus |
| 3R | 22292950..22293071 | 460..581 | 100 | -> | Minus |
| 3R | 22293459..22293906 | 10..459 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:48:42 Download gff for
BS10436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18118157..18118180 | 848..871 | 100 | -> | Minus |
| arm_3R | 18118335..18118600 | 582..847 | 100 | -> | Minus |
| arm_3R | 18118672..18118793 | 460..581 | 100 | -> | Minus |
| arm_3R | 18119181..18119628 | 10..459 | 99 | | Minus |
BS10436.5prime Sequence
878 bp (800 high quality bases) assembled on 2006-04-19
> BS10436.5prime
GAAGTTATCAGTCGACATGGCCGTTAGCAATATTGTCTGCGAGTGGCTAA
GAGCTTTGGGCCTGGCCCAATACGCCGAGAGCTTCCTGGACAATGGCTAC
GACGACCTGGAGATCTGTAAACAGGTCGGTGATCCCGATCTAGATGCCAT
CGGCGTCGAGAATCCTGCCCATAGACACAAGCTGCTCAAGAGCATCCGAT
CGCTGAGGGAAAAGGGCGCCGCATCCGTTTACTTTATGCTCAACGATCCC
AACTCGCTCTCGGGCAGCATGGAGATCCTCTGCGAAACACCACCCAACAA
CGAACTGGAGCTCGTCCTGCGGGAGCAGCTAGAGACGGACGGAGTCCGGC
TGACCGCGCATCCATACTCAACACCGCCCTCGAGTTGTCTGTCCGACAAG
GAGGAGGATGAGATTTACGGATTCGGCTATGGCGTCTTCGCACCCCGCGT
GGCCAGAGGAGGGTTAACACAACAGCAACAGCTGCTGCAGCAGCAGACGC
TGCAAACGCAACAGAGCATACAGCAACAGCAGCAGCAGATGCAACAGCAG
CAGCAACAGTTACCAATTGTGCCAGGACAACAGCAGCAAGGACCTCATCA
GCATCAGACCCTGCCACCGAATGTCGCGCATTTGAACTTTGTGCAGCAAA
ACTGCCTGAGTCCGCGCTCAGCTTATTTCTACGAATTTCCACCGACAGCT
GAGGGCCGCGAGACAAAGAAACGCACCACACTGGCCCGGCTGCTGAAAGG
CTTGAAGACTGTCAATCGACGGGATCGGAACAATCAACAGAATGGCGCCC
AGGCCAGGGCGGCTAACGATCGTCTGCGGCACTTTCAAATGATAAACGGC
GGCGCCGGCGGACAGCAGCACAGTTTCG
BS10436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31163-PB | 2859 | CG31163-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG31163-PD | 3171 | CG31163-RD | 671..1174 | 375..878 | 2520 | 100 | Plus |
| CG31163-PD | 3171 | CG31163-RD | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SKIP-RI | 5049 | CG31163-RI | 1158..2021 | 15..878 | 4320 | 100 | Plus |
| SKIP-RB | 5049 | CG31163-RB | 1158..2021 | 15..878 | 4320 | 100 | Plus |
| SKIP-RG | 6489 | CG31163-RG | 1854..2357 | 375..878 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22174366..22174727 | 15..376 | 1810 | 100 | Plus |
| 3R | 32079331 | 3R | 22278351..22278626 | 376..651 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 22279228..22279336 | 701..809 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 22280798..22280868 | 808..878 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 22318569..22318706 | 165..28 | 285 | 80.4 | Minus |
| 3R | 32079331 | 3R | 22278706..22278755 | 652..701 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:47:30 has no hits.
BS10436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:58 Download gff for
BS10436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31163-PC | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:45 Download gff for
BS10436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31163-PB | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:05:04 Download gff for
BS10436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1151..2021 | 7..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:39:04 Download gff for
BS10436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1151..2021 | 7..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:39:04 Download gff for
BS10436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22174359..22174727 | 7..376 | 99 | -> | Plus |
| 3R | 22278352..22278626 | 377..651 | 100 | -> | Plus |
| 3R | 22278706..22278755 | 652..701 | 100 | -> | Plus |
| 3R | 22279229..22279335 | 702..808 | 100 | -> | Plus |
| 3R | 22280799..22280868 | 809..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:05:04 Download gff for
BS10436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18000081..18000449 | 7..376 | 99 | -> | Plus |
| arm_3R | 18104074..18104348 | 377..651 | 100 | -> | Plus |
| arm_3R | 18104428..18104477 | 652..701 | 100 | -> | Plus |
| arm_3R | 18104951..18105057 | 702..808 | 100 | -> | Plus |
| arm_3R | 18106521..18106590 | 809..878 | 100 | | Plus |
BS10436.pep Sequence
Translation from 16 to 2874
> BS10436.pep
MAVSNIVCEWLRALGLAQYAESFLDNGYDDLEICKQVGDPDLDAIGVENP
AHRHKLLKSIRSLREKGAASVYFMLNDPNSLSGSMEILCETPPNNELELV
LREQLETDGVRLTAHPYSTPPSSCLSDKEEDEIYGFGYGVFAPRVARGGL
TQQQQLLQQQTLQTQQSIQQQQQQMQQQQQQLPIVPGQQQQGPHQHQTLP
PNVAHLNFVQQNCLSPRSAYFYEFPPTAEGRETKKRTTLARLLKGLKTVN
RRDRNNQQNGAQARAANDRLRHFQMINGGAGGQQHSFEETIHRLKVQEAM
RKKEKFQREHEEILRDIRQGLLQMSRGEGRMDDTYMYDEALRTGGGMGIA
GLGMPLGVGGNGGGGGAAHYAVSALHHQGHWYDEPPYESDPDDFLMAGLN
CGPAATIQGGRVRFSNNRESTGVISLRSAGDISLPQRGPPRRGLIVPQQP
PNPPTIIPLTHARSHDRESGDYAGSISDLQSVTSRFSTVSIGTNNCTARY
RTLSGGIGESPSLSPSPSSDYEDIGVTRGHGCLPPSLLAAKAKKNGLPHG
KANTICQKATVHHSGEMRSSAKEIGAFNENGRNFVATKDTSRDFSNSQDN
TDRGSMSDQAFACSASSVESLPSASGSSTQALVRPGSPHSSISAEDRTSM
ASCICKAKALVDSLPNPYDKEALKFKKGDLIDVLSMNASGIWKGRCHGRV
GHFKFINVEVLPEQRMKNSSSKTLAAGSRLANSGNGSHNGGPCSVEDLLI
RIGLKEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLTAVQL
LHDIECSDVDIPGSSSENDEARLNNINMKHGASPFGRRHFPRDSGCYEGS
PLPSSQTPTQAVNSTDESNSLDDVVTKCSSEIMKRVESARRCKDNPFKTT
LPGGGRLGKKSFLGGNGLMADDTLTRGGLSEKSSDSGVSSSSLSSGPLKS
ST*
BS10436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SKIP-PI | 1080 | CG31163-PI | 1..952 | 1..952 | 4972 | 100 | Plus |
| SKIP-PB | 952 | CG31163-PB | 1..952 | 1..952 | 4972 | 100 | Plus |
| SKIP-PF | 1064 | CG31163-PF | 228..1064 | 116..952 | 4347 | 99.5 | Plus |
| SKIP-PE | 1064 | CG31163-PE | 228..1064 | 116..952 | 4347 | 99.5 | Plus |
| SKIP-PJ | 1027 | CG31163-PJ | 228..1027 | 116..952 | 4085 | 95.1 | Plus |
| SKIP-PF | 1064 | CG31163-PF | 1..120 | 1..120 | 626 | 100 | Plus |
| SKIP-PE | 1064 | CG31163-PE | 1..120 | 1..120 | 626 | 100 | Plus |
