Clone BS10437 Report

Search the DGRC for BS10437

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptDoa-RK
Protein status:BS10437.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10437.3prime Sequence

974 bp (809 high quality bases) assembled on 2006-04-19

> BS10437.3prime
ATGGTCTAGAAAGCTTTCATCTGGAGAGGCTATGCGATCGTTCGCGGCTG
CTGCTGCCCGACGAAAGGGGCTGCTTGTTGCTGACCTCACCTACTCGATG
GTGTGGTGGCAGCCTATCAAAGAACGGATGATGCAGGGCCTCACCTAACG
TGATGCGTGACGACGGCTCGTACTCCAGCATCTTCTTGATCAGACTGAAG
AGCTCACAGTGGTCCTCGCTGTCGCTCAGCTGGCACAGGAACAACGGCTT
GCAGTGATCACGGACGTAGCGACCCGCACTGGACTTCTCATCCCAATCTA
ACTTACCATGATAGAAGTACTTTGTTTTGGTTTTGCTATAAAGAGTATGA
TTGCGTGCCATGCGATATGGTATTTGTCCCAAGATTCGCTCCATCATGGC
CAAGTGTTCGCGATTGTCGTGCGTTTGGAAGAGCGTGATTCCCAGATACA
GTTCGAACAAGATGCACCCAATGGACCAAACGTCACACGGCTGTGACCAC
CCCAGCTCCAGTATGACCTCTGGCGCGCGGTAATGTCGCGTCGAGACAAT
TGTGCTGTGGTGCTCGTGGTCGAAGGTGGCCGACCCGAAGTCGATTAGGC
GAACGTCCGTATTCTTGACGCGGCGCACCTCGCGGTTAATCTTATGATTA
TAGTGAGAAGTATAATCCGAGTCGACGAAGAGTATGTTCTCCGGCTTGAG
ATCTGTGTGCGTTAAACGATTGTCATGTAGAAATTTCACAGAGTAGCATA
ATTGATAGGCCATATGGCGCACTTGGTCCAGCGGGTATGGCTCATAGTTG
TTCTCTCGCAAAAAATCGAAAACACTGAGCCCCAACATTTCAAAAACTAT
ACACATGTGTCCATGATAATCAAACCAGTCAATCATTTTGACGCACAAAT
GATCACAATGCGGATCCTTTTGGGCCATCTTTTTCAAAGCATTTATTTTC
AGCTTGGCAGCTTCGCGGTACTTT

BS10437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33553-PC 2499 Doa-RC 1542..2499 974..17 4715 99.6 Minus
CG33553-PD 6192 Doa-RD 5235..6192 974..17 4715 99.6 Minus
CG33553-PA 1743 Doa-RA 804..1427 974..351 3045 99.5 Minus
CG33553-PE 2952 Doa-RE 2013..2636 974..351 3045 99.5 Minus
CG33553-PB 1536 Doa-RB 597..1220 974..351 3045 99.5 Minus
CG33553-PF 1743 Doa-RF 804..1427 974..351 3045 99.5 Minus
CG33553-PG 1950 Doa-RG 1011..1634 974..351 3045 99.5 Minus
CG33553-PA 1743 Doa-RA 1424..1743 336..17 1600 100 Minus
CG33553-PE 2952 Doa-RE 2633..2952 336..17 1600 100 Minus
CG33553-PB 1536 Doa-RB 1217..1536 336..17 1600 100 Minus
CG33553-PF 1743 Doa-RF 1424..1743 336..17 1600 100 Minus
CG33553-PG 1950 Doa-RG 1631..1950 336..17 1600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Doa-RZ 3958 CG42320-RZ 1971..2928 974..17 4745 99.7 Minus
Doa-RY 5756 CG42320-RY 3769..4726 974..17 4745 99.7 Minus
Doa-RX 3967 CG42320-RX 1980..2937 974..17 4745 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28921340..28921551 354..143 1060 100 Minus
3R 32079331 3R 28920689..28920860 809..638 860 100 Minus
3R 32079331 3R 28920920..28921091 637..466 860 100 Minus
3R 32079331 3R 28921613..28921742 146..17 650 100 Minus
3R 32079331 3R 28921155..28921269 468..354 575 100 Minus
3R 32079331 3R 28920537..28920627 899..809 455 100 Minus
3R 32079331 3R 28920393..28920467 974..900 330 96 Minus
Blast to na_te.dros performed 2015-02-12 12:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6916..7012 160..253 118 59.8 Plus

BS10437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:59 Download gff for BS10437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1658-PC 1542..2499 17..974 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:46 Download gff for BS10437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33553-PD 5235..6192 17..974 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:09 Download gff for BS10437.3prime
Subject Subject Range Query Range Percent Splice Strand
Doa-RX 1980..2942 11..974 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:07 Download gff for BS10437.3prime
Subject Subject Range Query Range Percent Splice Strand
Doa-RX 1980..2942 11..974 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:07 Download gff for BS10437.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28920393..28920467 900..974 96 -> Minus
3R 28920537..28920627 809..899 100 -> Minus
3R 28920690..28920860 638..808 100 -> Minus
3R 28920920..28921089 468..637 100 -> Minus
3R 28921156..28921269 354..467 100 -> Minus
3R 28921341..28921549 145..353 100 -> Minus
3R 28921615..28921747 11..144 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:09 Download gff for BS10437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24746115..24746189 900..974 96 -> Minus
arm_3R 24746259..24746349 809..899 100 -> Minus
arm_3R 24746412..24746582 638..808 100 -> Minus
arm_3R 24747337..24747469 11..144 97   Minus
arm_3R 24746642..24746811 468..637 100 -> Minus
arm_3R 24746878..24746991 354..467 100 -> Minus
arm_3R 24747063..24747271 145..353 100 -> Minus

BS10437.5prime Sequence

914 bp (842 high quality bases) assembled on 2006-04-19

> BS10437.5prime
GAAGTTATCAGTCGACATGGTGGCTGCCAATTTGGAGGTGCCAACATCGT
CATCGTCATCAGCGGCCACAAAGCGCCAGAAAGATGTTGACAACAAGCTA
GAAAAATGCTTGAACGACATGCTAAAGTTGAAGACCAGCAGCAACAACAA
CAGCACTAGTAACAGCAATAATAATGCAATCATGTCGCATTCGCTGACGG
GCGAGCACAAAGACCCGAAGACTGCACTCGAAGGCCCCACGAGCAGCAGC
AGCAGCAGCAGCAGCAAGTACATAGGTGAATCTCAGATCCCCGTGCCAGT
TCAGCTGTACGATCCGCAGAAGCCGTTGCTGCAGCAACAGCAGCAGCAAC
AAAGGATCTGCTATCCCATAGGCAAATCTAACTCTACCTCTCAGCTACCC
ATGGGCGGCTATCAGCGATTGCTGCAACATCAGCAGCAACAACATCACCA
ACAGCAACAGCAGCAACATCAGGAACAGCAGCAGTATCCGCAGCACAAGC
GACCCTTCCTCAACTGGAATAGCTTTGCATGTTCCGCCATGAACGGAGCG
AGTGATCCCTTCATGCAGCAGCAACACATGCCTGCCCACCAGCAACAGCA
GCATCTGCCACACAAGCTGCAGCAATCATACTCCTCGTCTCATGTGCCCA
AGCAGGCGCCCAAATCGGGACTGGCCATGTTTCTGCAGAAGAACACCAAC
AAGGAGAACAAGTTTGGCCAGCCGATGCAGCAGCAGCCACCCGGCATGAT
GCCCCAGATGTATGGATACCAGGCGCCCCAGCAGCAATCCAAGATAGGCT
ATCCCCGCACAGGTGCCCCACTGACGCACTCGGCCTCCTTCAGCTCCCGC
CCAAGGCCGACGGCCCTGCAGTTCCACAGCAACATCAGCAGCAGCAGCAT
CTGCAGCAACAGCA

BS10437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33553-PC 2499 Doa-RC 1..861 17..877 4230 99.6 Plus
CG33553-PD 6192 Doa-RD 3694..4554 17..877 4230 99.6 Plus
CG33553-PH 5115 Doa-RH 3640..4500 17..877 4230 99.6 Plus
CG33553-PC 2499 Doa-RC 862..899 877..914 190 100 Plus
CG33553-PD 6192 Doa-RD 4555..4592 877..914 190 100 Plus
CG33553-PH 5115 Doa-RH 4501..4538 877..914 190 100 Plus
CG12650-PB 1020 CG12650-RB 115..153 876..914 145 94.8 Plus
CG32677-PA 5439 CG32677-RA 374..401 872..899 140 100 Plus
CG30389-PA 2943 CG30389-RA 2641..2672 877..908 135 96.8 Plus
CG30389-PC 2943 CG30389-RC 2641..2672 877..908 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Doa-RY 5756 CG42320-RY 2228..3126 17..914 4425 99.7 Plus
Doa-RP 7311 CG42320-RP 3783..4681 17..914 4425 99.7 Plus
Doa-RK 3693 CG42320-RK 165..1063 17..914 4425 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28909819..28910717 17..914 4400 99.6 Plus
Blast to na_te.dros performed 2015-02-12 04:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2792 134..625 347 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2659 302..624 324 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7018 427..720 299 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2487..2958 42..503 279 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6470..6902 57..497 277 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2635..3025 134..524 252 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2543 394..634 246 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6944 302..514 246 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7053 137..483 226 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2944 42..630 216 53.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6951 242..495 204 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6545..6859 42..352 195 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6892 439..625 187 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6894 134..272 176 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6952 238..463 175 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..7009 134..363 167 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2518 131..272 152 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6871 456..625 151 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1099..1161 121..182 150 73 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2629 587..914 149 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2662 566..914 149 54.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6871 42..174 145 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6859 565..625 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2527 22..272 143 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2396 565..625 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2420 565..625 142 71.9 Plus
roo 9092 roo DM_ROO 9092bp 961..1150 142..352 139 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6780 566..624 133 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6841 565..625 133 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6816 565..624 129 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1555..1599 134..178 126 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6796 565..625 125 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2804..2838 132..166 121 82.9 Plus
roo 9092 roo DM_ROO 9092bp 1071..1114 137..179 118 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6703..6846 23..170 117 59.9 Plus
roo 9092 roo DM_ROO 9092bp 1086..1126 312..352 115 75.6 Plus
roo 9092 roo DM_ROO 9092bp 1067..1116 302..351 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5633..5692 571..630 111 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1542..1594 302..353 109 69.8 Plus
roo 9092 roo DM_ROO 9092bp 1093..1150 565..625 109 67.2 Plus

BS10437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:01 Download gff for BS10437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1658-PC 1..898 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:48 Download gff for BS10437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33553-PH 3635..4537 13..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:46:55 Download gff for BS10437.5prime
Subject Subject Range Query Range Percent Splice Strand
Doa-RK 160..1062 13..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:01 Download gff for BS10437.5prime
Subject Subject Range Query Range Percent Splice Strand
Doa-RK 160..1062 13..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:01 Download gff for BS10437.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28909814..28910716 13..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:46:55 Download gff for BS10437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24735536..24736438 13..913 99   Plus

BS10437.complete Sequence

2531 bp assembled on 2007-11-30

GenBank Submission: FJ636660

> BS10437.complete
GAAGTTATCAGTCGACATGGTGGCTGCCAATTTGGAGGTGCCAACATCGT
CATCGTCATCAGCGGCCACAAAGCGCCAGAAAGATGTTGACAACAAGCTA
GAAAAATGCTTGAACGACATGCTAAAGTTGAAGACCAGCAGCAACAACAA
CAGCACTAGTAACAGCAATAATAATGCAATCATGTCGCATTCGCTGACGG
GCGAGCACAAAGACCCGAAGACTGCACTCGAAGGCCCCACGAGCAGCAGC
AGCAGCAGCAGCAGCAAGTACATAGGTGAATCTCAGATCCCCGTGCCAGT
TCAGCTGTACGATCCGCAGAAGCCGTTGCTGCAGCAACAGCAGCAGCAAC
AAAGGATCTGCTATCCCATAGGCAAATCTAACTCTACCTCTCAGCTACCC
ATGGGCGGCTATCAGCGATTGCTGCAACATCAGCAGCAACAACATCACCA
ACAGCAACAGCAGCAACATCAGGAACAGCAGCAGTATCCGCAGCACAAGC
GACCCTTCCTCAACTGGAATAGCTTTGCATGTTCCGCCATGAACGGAGCG
AGTGATCCCTTCATGCAGCAGCAACACATGCCTGCCCACCAGCAACAGCA
GCATCTGCCACACAAGCTGCAGCAATCATACTCCTCGTCTCATGTGCCCA
AGCAGGCGCCCAAATCGGGACTGGCCATGTTTCTGCAGAAGAACACCAAC
AAGGAGAACAAGTTTGGCCAGCCGATGCAGCAGCAGCCACCCGGCATGAT
GCCCCAGATGTATGGATACCAGGCGCCCCAGCAGCAATCCAAGATAGGCT
ATCCCCGCACAGGTGCCCCACTGACGCACTCGGCCTCCTTCAGCTCCGCC
CAAAGGCCGACGGCCCTGCAGTTCCACCAGCAACATCAGCAGCAGCAGCA
TCTGCAGCAACAGCAGCAACACCCCCAGCAGCAACAACATCAGCATTCCA
GCTTTGGGGTGGGCATGATGAGTAGGAATTACTATAATATGCCCAAGCAG
CCCGAGCGCAAGCCGCTGCAGACCTTTGATCCGTATGCCTATCCCAAGCC
GAATCAGATGCAGCCGGTCAAGTACCAGCAGCAGCAACAGCATCCGCATA
CGCAGTTTCAGAATGCTTCCGCTGGAGGAGGCGGTGGCGGTGCTGCTGGG
CTTCAATACGATCCAAATACAAATACGCAATTGTTTTACGCGTCGCCGGC
GTCATCGTCATCGAACAAGCAACCGCAACAACCGCAACAGCAACAGCAGC
AGCAGCAGTCCCAGCTACAACAAAGCAATTCTGTCATATTCAATCACTCG
GGCCAGCAACACCAACCACATCAACAGCAGCAGAATGAAATGTCCAAGTC
CGCATTGGGGCTGCACTTCATCGAGACAGCAAAGCCCGTCATTCAAGATG
ATGCTGATGGTCACTTAATTTACCACACCGGAGACATTCTCCATCACAGA
TATAAGATCATGGCCACACTGGGCGAGGGAACTTTTGGACGTGTGGTCAA
GGTCAAAGATATGGAGCGTGATTACTGCATGGCTTTAAAGATTATTAAGA
ACGTGGAAAAGTACCGCGAAGCTGCCAAGCTGGAAATAAATGCTTTGGAA
AAGATTGCCCAAAAGGATCCGCATTGTGATCATTTGTGCGTCAAAATGAT
TGACTGGTTTGATTATCATGGACACATGTGTATAGTTTTTGAAATGTTGG
GGCTCAGTGTTTTCGATTTTTTGCGAGAGAACAACTATGAGCCATACCCG
CTGGACCAAGTGCGCCATATGGCCTATCAATTATGCTACTCTGTGAAATT
TCTACATGACAATCGTTTAACGCACACAGATCTCAAGCCGGAGAACATAC
TCTTCGTCGACTCGGATTATACTTCTCACTATAATCATAAGATTAACCGC
GAGGTGCGCCGCGTCAAGAATACGGACGTTCGCCTAATCGACTTCGGGTC
GGCCACCTTCGACCACGAGCACCACAGCACAATTGTCTCGACGCGACATT
ACCGCGCGCCAGAGGTCATACTGGAGCTGGGGTGGTCACAGCCGTGTGAC
GTTTGGTCCATTGGGTGCATCTTGTTCGAACTGTATCTGGGAATCACGCT
CTTCCAAACGCACGACAATCGCGAACACTTGGCCATGATGGAGCGAATCT
TGGGACAAATACCATATCGCATGGCACGCAATCATACTCTTTATAGCAAA
ACCAAAACAAAGTACTTCTATCATGGTAAGTTAGATTGGGATGAGAAGTC
CAGTGCGGGTCGCTACGTCCGTGATCACTGCAAGCCGTTGTTCCTGTGCC
AGCTGAGCGACAGCGAGGACCACTGTGAGCTCTTCAGTCTGATCAAGAAG
ATGCTGGAGTACGAGCCGTCGTCACGCATCACGTTAGGTGAGGCCCTGCA
TCATCCGTTCTTTGATAGGCTGCCACCACACCATCGAGTAGGTGAGGTCA
GCAACAAGCAGCCCCTTTCGTCGGGCAGCAGCAGCCGCGAACGATCGCAT
AGCCTCTCCAGATGAAAGCTTTCTAGACCAT

BS10437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Doa-RY 4608 CG42320-PY 2110..4608 17..2515 12495 100 Plus
Doa-RP 6138 CG42320-PP 3640..6138 17..2515 12495 100 Plus
Doa-RK 2499 CG42320-PK 1..2499 17..2515 12495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Doa-RY 5756 CG42320-RY 2228..4726 17..2515 12495 100 Plus
Doa-RP 7311 CG42320-RP 3783..6281 17..2515 12495 100 Plus
Doa-RK 3693 CG42320-RK 165..2663 17..2515 12495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28909819..28911177 17..1375 6795 100 Plus
3R 32079331 3R 28921340..28921551 2178..2389 1060 100 Plus
3R 32079331 3R 28920689..28920860 1723..1894 860 100 Plus
3R 32079331 3R 28920920..28921091 1895..2066 860 100 Plus
3R 32079331 3R 28921613..28921742 2386..2515 650 100 Plus
3R 32079331 3R 28920353..28920467 1518..1632 575 100 Plus
3R 32079331 3R 28921155..28921269 2064..2178 575 100 Plus
3R 32079331 3R 28920537..28920627 1633..1723 455 100 Plus
3R 32079331 3R 28919490..28919567 1374..1451 390 100 Plus
3R 32079331 3R 28920225..28920291 1452..1518 335 100 Plus
Blast to na_te.dros performed 2014-11-28 05:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2792 134..625 347 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2990 302..946 337 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2854 394..945 313 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7018 427..720 299 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6470..6944 57..514 281 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2487..2958 42..503 279 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2987 885..1273 276 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2635..3025 134..524 252 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7053 137..483 226 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2944 42..630 216 53.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2435 1213..1336 215 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6951 242..495 204 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6545..6859 42..352 195 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6885 1218..1335 195 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6892 439..625 187 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..7026 1040..1354 183 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6894 134..272 176 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6952 238..463 175 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6861 1218..1332 171 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..7009 134..363 167 58.4 Plus
roo 9092 roo DM_ROO 9092bp 971..1150 1155..1339 157 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6819 1228..1335 156 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2518 131..272 152 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6871 456..625 151 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1099..1161 121..182 150 73 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6867..6921 1218..1272 149 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6871 42..174 145 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6859 565..625 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2527 22..272 143 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2396 565..625 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2420 565..625 142 71.9 Plus
roo 9092 roo DM_ROO 9092bp 961..1150 142..352 139 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1602 1261..1347 134 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6780 566..624 133 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6841 565..625 133 70.3 Plus
roo 9092 roo DM_ROO 9092bp 1083..1141 1047..1105 133 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2381 566..625 131 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..7112 565..935 131 53 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1555..1599 134..178 126 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6796 565..625 125 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2804..2838 132..166 121 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..7016 1047..1328 120 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6916..7012 2372..2279 118 59.8 Minus
roo 9092 roo DM_ROO 9092bp 1071..1114 137..179 118 77.3 Plus
roo 9092 roo DM_ROO 9092bp 1067..1116 302..351 115 70 Plus
roo 9092 roo DM_ROO 9092bp 1086..1126 312..352 115 75.6 Plus

BS10437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:24 Download gff for BS10437.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3635..6138 13..2515 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:29 Download gff for BS10437.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3640..6137 17..2514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:16 Download gff for BS10437.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RK 165..2662 17..2514 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:31 Download gff for BS10437.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3640..6137 17..2514 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:34 Download gff for BS10437.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RK 165..2662 17..2514 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:34 Download gff for BS10437.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28921341..28921549 2179..2387 100 -> Plus
3R 28921615..28921741 2388..2514 100   Plus
3R 28920690..28920860 1724..1894 100 -> Plus
3R 28920920..28921089 1895..2064 100 -> Plus
3R 28921156..28921269 2065..2178 100 -> Plus
3R 28909819..28911177 17..1375 100 -> Plus
3R 28919492..28919567 1376..1451 100 -> Plus
3R 28920225..28920291 1452..1518 100 -> Plus
3R 28920354..28920467 1519..1632 100 -> Plus
3R 28920537..28920627 1633..1723 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:16 Download gff for BS10437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24735541..24736899 17..1375 100 -> Plus
arm_3R 24745214..24745289 1376..1451 100 -> Plus
arm_3R 24745947..24746013 1452..1518 100 -> Plus
arm_3R 24746076..24746189 1519..1632 100 -> Plus
arm_3R 24746259..24746349 1633..1723 100 -> Plus
arm_3R 24746412..24746582 1724..1894 100 -> Plus
arm_3R 24746642..24746811 1895..2064 100 -> Plus
arm_3R 24746878..24746991 2065..2178 100 -> Plus
arm_3R 24747063..24747271 2179..2387 100 -> Plus
arm_3R 24747337..24747463 2388..2514 100   Plus

BS10437.pep Sequence

Translation from 16 to 2514

> BS10437.pep
MVAANLEVPTSSSSSAATKRQKDVDNKLEKCLNDMLKLKTSSNNNSTSNS
NNNAIMSHSLTGEHKDPKTALEGPTSSSSSSSSKYIGESQIPVPVQLYDP
QKPLLQQQQQQQRICYPIGKSNSTSQLPMGGYQRLLQHQQQQHHQQQQQQ
HQEQQQYPQHKRPFLNWNSFACSAMNGASDPFMQQQHMPAHQQQQHLPHK
LQQSYSSSHVPKQAPKSGLAMFLQKNTNKENKFGQPMQQQPPGMMPQMYG
YQAPQQQSKIGYPRTGAPLTHSASFSSAQRPTALQFHQQHQQQQHLQQQQ
QHPQQQQHQHSSFGVGMMSRNYYNMPKQPERKPLQTFDPYAYPKPNQMQP
VKYQQQQQHPHTQFQNASAGGGGGGAAGLQYDPNTNTQLFYASPASSSSN
KQPQQPQQQQQQQQSQLQQSNSVIFNHSGQQHQPHQQQQNEMSKSALGLH
FIETAKPVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDME
RDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDY
HGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNR
LTHTDLKPENILFVDSDYTSHYNHKINREVRRVKNTDVRLIDFGSATFDH
EHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCILFELYLGITLFQTHD
NREHLAMMERILGQIPYRMARNHTLYSKTKTKYFYHGKLDWDEKSSAGRY
VRDHCKPLFLCQLSDSEDHCELFSLIKKMLEYEPSSRITLGEALHHPFFD
RLPPHHRVGEVSNKQPLSSGSSSRERSHSLSR*

BS10437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Doa-PY 1535 CG42320-PY 704..1535 1..832 4477 100 Plus
Doa-PP 2045 CG42320-PP 1214..2045 1..832 4477 100 Plus
Doa-PK 832 CG33553-PC 1..832 1..832 4477 100 Plus
Doa-PX 889 CG42320-PX 508..889 451..832 2067 99.2 Plus
Doa-PAA 398 CG42320-PAA 26..398 454..832 2009 98.4 Plus