Clone Sequence Records
BS10437.3prime Sequence
974 bp (809 high quality bases) assembled on 2006-04-19
> BS10437.3prime
ATGGTCTAGAAAGCTTTCATCTGGAGAGGCTATGCGATCGTTCGCGGCTG
CTGCTGCCCGACGAAAGGGGCTGCTTGTTGCTGACCTCACCTACTCGATG
GTGTGGTGGCAGCCTATCAAAGAACGGATGATGCAGGGCCTCACCTAACG
TGATGCGTGACGACGGCTCGTACTCCAGCATCTTCTTGATCAGACTGAAG
AGCTCACAGTGGTCCTCGCTGTCGCTCAGCTGGCACAGGAACAACGGCTT
GCAGTGATCACGGACGTAGCGACCCGCACTGGACTTCTCATCCCAATCTA
ACTTACCATGATAGAAGTACTTTGTTTTGGTTTTGCTATAAAGAGTATGA
TTGCGTGCCATGCGATATGGTATTTGTCCCAAGATTCGCTCCATCATGGC
CAAGTGTTCGCGATTGTCGTGCGTTTGGAAGAGCGTGATTCCCAGATACA
GTTCGAACAAGATGCACCCAATGGACCAAACGTCACACGGCTGTGACCAC
CCCAGCTCCAGTATGACCTCTGGCGCGCGGTAATGTCGCGTCGAGACAAT
TGTGCTGTGGTGCTCGTGGTCGAAGGTGGCCGACCCGAAGTCGATTAGGC
GAACGTCCGTATTCTTGACGCGGCGCACCTCGCGGTTAATCTTATGATTA
TAGTGAGAAGTATAATCCGAGTCGACGAAGAGTATGTTCTCCGGCTTGAG
ATCTGTGTGCGTTAAACGATTGTCATGTAGAAATTTCACAGAGTAGCATA
ATTGATAGGCCATATGGCGCACTTGGTCCAGCGGGTATGGCTCATAGTTG
TTCTCTCGCAAAAAATCGAAAACACTGAGCCCCAACATTTCAAAAACTAT
ACACATGTGTCCATGATAATCAAACCAGTCAATCATTTTGACGCACAAAT
GATCACAATGCGGATCCTTTTGGGCCATCTTTTTCAAAGCATTTATTTTC
AGCTTGGCAGCTTCGCGGTACTTT
BS10437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33553-PC | 2499 | Doa-RC | 1542..2499 | 974..17 | 4715 | 99.6 | Minus |
CG33553-PD | 6192 | Doa-RD | 5235..6192 | 974..17 | 4715 | 99.6 | Minus |
CG33553-PA | 1743 | Doa-RA | 804..1427 | 974..351 | 3045 | 99.5 | Minus |
CG33553-PE | 2952 | Doa-RE | 2013..2636 | 974..351 | 3045 | 99.5 | Minus |
CG33553-PB | 1536 | Doa-RB | 597..1220 | 974..351 | 3045 | 99.5 | Minus |
CG33553-PF | 1743 | Doa-RF | 804..1427 | 974..351 | 3045 | 99.5 | Minus |
CG33553-PG | 1950 | Doa-RG | 1011..1634 | 974..351 | 3045 | 99.5 | Minus |
CG33553-PA | 1743 | Doa-RA | 1424..1743 | 336..17 | 1600 | 100 | Minus |
CG33553-PE | 2952 | Doa-RE | 2633..2952 | 336..17 | 1600 | 100 | Minus |
CG33553-PB | 1536 | Doa-RB | 1217..1536 | 336..17 | 1600 | 100 | Minus |
CG33553-PF | 1743 | Doa-RF | 1424..1743 | 336..17 | 1600 | 100 | Minus |
CG33553-PG | 1950 | Doa-RG | 1631..1950 | 336..17 | 1600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doa-RZ | 3958 | CG42320-RZ | 1971..2928 | 974..17 | 4745 | 99.7 | Minus |
Doa-RY | 5756 | CG42320-RY | 3769..4726 | 974..17 | 4745 | 99.7 | Minus |
Doa-RX | 3967 | CG42320-RX | 1980..2937 | 974..17 | 4745 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28921340..28921551 | 354..143 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 28920689..28920860 | 809..638 | 860 | 100 | Minus |
3R | 32079331 | 3R | 28920920..28921091 | 637..466 | 860 | 100 | Minus |
3R | 32079331 | 3R | 28921613..28921742 | 146..17 | 650 | 100 | Minus |
3R | 32079331 | 3R | 28921155..28921269 | 468..354 | 575 | 100 | Minus |
3R | 32079331 | 3R | 28920537..28920627 | 899..809 | 455 | 100 | Minus |
3R | 32079331 | 3R | 28920393..28920467 | 974..900 | 330 | 96 | Minus |
Blast to na_te.dros performed 2015-02-12 12:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6916..7012 | 160..253 | 118 | 59.8 | Plus |
BS10437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:39:59 Download gff for
BS10437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1658-PC | 1542..2499 | 17..974 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:46 Download gff for
BS10437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33553-PD | 5235..6192 | 17..974 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:09 Download gff for
BS10437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RX | 1980..2942 | 11..974 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:07 Download gff for
BS10437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RX | 1980..2942 | 11..974 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:07 Download gff for
BS10437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28920393..28920467 | 900..974 | 96 | -> | Minus |
3R | 28920537..28920627 | 809..899 | 100 | -> | Minus |
3R | 28920690..28920860 | 638..808 | 100 | -> | Minus |
3R | 28920920..28921089 | 468..637 | 100 | -> | Minus |
3R | 28921156..28921269 | 354..467 | 100 | -> | Minus |
3R | 28921341..28921549 | 145..353 | 100 | -> | Minus |
3R | 28921615..28921747 | 11..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:09 Download gff for
BS10437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24746115..24746189 | 900..974 | 96 | -> | Minus |
arm_3R | 24746259..24746349 | 809..899 | 100 | -> | Minus |
arm_3R | 24746412..24746582 | 638..808 | 100 | -> | Minus |
arm_3R | 24747337..24747469 | 11..144 | 97 | | Minus |
arm_3R | 24746642..24746811 | 468..637 | 100 | -> | Minus |
arm_3R | 24746878..24746991 | 354..467 | 100 | -> | Minus |
arm_3R | 24747063..24747271 | 145..353 | 100 | -> | Minus |
BS10437.5prime Sequence
914 bp (842 high quality bases) assembled on 2006-04-19
> BS10437.5prime
GAAGTTATCAGTCGACATGGTGGCTGCCAATTTGGAGGTGCCAACATCGT
CATCGTCATCAGCGGCCACAAAGCGCCAGAAAGATGTTGACAACAAGCTA
GAAAAATGCTTGAACGACATGCTAAAGTTGAAGACCAGCAGCAACAACAA
CAGCACTAGTAACAGCAATAATAATGCAATCATGTCGCATTCGCTGACGG
GCGAGCACAAAGACCCGAAGACTGCACTCGAAGGCCCCACGAGCAGCAGC
AGCAGCAGCAGCAGCAAGTACATAGGTGAATCTCAGATCCCCGTGCCAGT
TCAGCTGTACGATCCGCAGAAGCCGTTGCTGCAGCAACAGCAGCAGCAAC
AAAGGATCTGCTATCCCATAGGCAAATCTAACTCTACCTCTCAGCTACCC
ATGGGCGGCTATCAGCGATTGCTGCAACATCAGCAGCAACAACATCACCA
ACAGCAACAGCAGCAACATCAGGAACAGCAGCAGTATCCGCAGCACAAGC
GACCCTTCCTCAACTGGAATAGCTTTGCATGTTCCGCCATGAACGGAGCG
AGTGATCCCTTCATGCAGCAGCAACACATGCCTGCCCACCAGCAACAGCA
GCATCTGCCACACAAGCTGCAGCAATCATACTCCTCGTCTCATGTGCCCA
AGCAGGCGCCCAAATCGGGACTGGCCATGTTTCTGCAGAAGAACACCAAC
AAGGAGAACAAGTTTGGCCAGCCGATGCAGCAGCAGCCACCCGGCATGAT
GCCCCAGATGTATGGATACCAGGCGCCCCAGCAGCAATCCAAGATAGGCT
ATCCCCGCACAGGTGCCCCACTGACGCACTCGGCCTCCTTCAGCTCCCGC
CCAAGGCCGACGGCCCTGCAGTTCCACAGCAACATCAGCAGCAGCAGCAT
CTGCAGCAACAGCA
BS10437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33553-PC | 2499 | Doa-RC | 1..861 | 17..877 | 4230 | 99.6 | Plus |
CG33553-PD | 6192 | Doa-RD | 3694..4554 | 17..877 | 4230 | 99.6 | Plus |
CG33553-PH | 5115 | Doa-RH | 3640..4500 | 17..877 | 4230 | 99.6 | Plus |
CG33553-PC | 2499 | Doa-RC | 862..899 | 877..914 | 190 | 100 | Plus |
CG33553-PD | 6192 | Doa-RD | 4555..4592 | 877..914 | 190 | 100 | Plus |
CG33553-PH | 5115 | Doa-RH | 4501..4538 | 877..914 | 190 | 100 | Plus |
CG12650-PB | 1020 | CG12650-RB | 115..153 | 876..914 | 145 | 94.8 | Plus |
CG32677-PA | 5439 | CG32677-RA | 374..401 | 872..899 | 140 | 100 | Plus |
CG30389-PA | 2943 | CG30389-RA | 2641..2672 | 877..908 | 135 | 96.8 | Plus |
CG30389-PC | 2943 | CG30389-RC | 2641..2672 | 877..908 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doa-RY | 5756 | CG42320-RY | 2228..3126 | 17..914 | 4425 | 99.7 | Plus |
Doa-RP | 7311 | CG42320-RP | 3783..4681 | 17..914 | 4425 | 99.7 | Plus |
Doa-RK | 3693 | CG42320-RK | 165..1063 | 17..914 | 4425 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28909819..28910717 | 17..914 | 4400 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-12 04:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2792 | 134..625 | 347 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2659 | 302..624 | 324 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7018 | 427..720 | 299 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2958 | 42..503 | 279 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6470..6902 | 57..497 | 277 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..3025 | 134..524 | 252 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2543 | 394..634 | 246 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6944 | 302..514 | 246 | 61.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7053 | 137..483 | 226 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2944 | 42..630 | 216 | 53.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6951 | 242..495 | 204 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6545..6859 | 42..352 | 195 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6892 | 439..625 | 187 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6894 | 134..272 | 176 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6952 | 238..463 | 175 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..7009 | 134..363 | 167 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2518 | 131..272 | 152 | 60.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6871 | 456..625 | 151 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1099..1161 | 121..182 | 150 | 73 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2629 | 587..914 | 149 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2662 | 566..914 | 149 | 54.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6871 | 42..174 | 145 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6859 | 565..625 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2527 | 22..272 | 143 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2396 | 565..625 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2420 | 565..625 | 142 | 71.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 961..1150 | 142..352 | 139 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6780 | 566..624 | 133 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6841 | 565..625 | 133 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6816 | 565..624 | 129 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1599 | 134..178 | 126 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6796 | 565..625 | 125 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2838 | 132..166 | 121 | 82.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1114 | 137..179 | 118 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6703..6846 | 23..170 | 117 | 59.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1086..1126 | 312..352 | 115 | 75.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1116 | 302..351 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5633..5692 | 571..630 | 111 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1594 | 302..353 | 109 | 69.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1093..1150 | 565..625 | 109 | 67.2 | Plus |
BS10437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:01 Download gff for
BS10437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1658-PC | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:48 Download gff for
BS10437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33553-PH | 3635..4537 | 13..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:46:55 Download gff for
BS10437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RK | 160..1062 | 13..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:01 Download gff for
BS10437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RK | 160..1062 | 13..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:01 Download gff for
BS10437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28909814..28910716 | 13..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:46:55 Download gff for
BS10437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24735536..24736438 | 13..913 | 99 | | Plus |
BS10437.complete Sequence
2531 bp assembled on 2007-11-30
GenBank Submission: FJ636660
> BS10437.complete
GAAGTTATCAGTCGACATGGTGGCTGCCAATTTGGAGGTGCCAACATCGT
CATCGTCATCAGCGGCCACAAAGCGCCAGAAAGATGTTGACAACAAGCTA
GAAAAATGCTTGAACGACATGCTAAAGTTGAAGACCAGCAGCAACAACAA
CAGCACTAGTAACAGCAATAATAATGCAATCATGTCGCATTCGCTGACGG
GCGAGCACAAAGACCCGAAGACTGCACTCGAAGGCCCCACGAGCAGCAGC
AGCAGCAGCAGCAGCAAGTACATAGGTGAATCTCAGATCCCCGTGCCAGT
TCAGCTGTACGATCCGCAGAAGCCGTTGCTGCAGCAACAGCAGCAGCAAC
AAAGGATCTGCTATCCCATAGGCAAATCTAACTCTACCTCTCAGCTACCC
ATGGGCGGCTATCAGCGATTGCTGCAACATCAGCAGCAACAACATCACCA
ACAGCAACAGCAGCAACATCAGGAACAGCAGCAGTATCCGCAGCACAAGC
GACCCTTCCTCAACTGGAATAGCTTTGCATGTTCCGCCATGAACGGAGCG
AGTGATCCCTTCATGCAGCAGCAACACATGCCTGCCCACCAGCAACAGCA
GCATCTGCCACACAAGCTGCAGCAATCATACTCCTCGTCTCATGTGCCCA
AGCAGGCGCCCAAATCGGGACTGGCCATGTTTCTGCAGAAGAACACCAAC
AAGGAGAACAAGTTTGGCCAGCCGATGCAGCAGCAGCCACCCGGCATGAT
GCCCCAGATGTATGGATACCAGGCGCCCCAGCAGCAATCCAAGATAGGCT
ATCCCCGCACAGGTGCCCCACTGACGCACTCGGCCTCCTTCAGCTCCGCC
CAAAGGCCGACGGCCCTGCAGTTCCACCAGCAACATCAGCAGCAGCAGCA
TCTGCAGCAACAGCAGCAACACCCCCAGCAGCAACAACATCAGCATTCCA
GCTTTGGGGTGGGCATGATGAGTAGGAATTACTATAATATGCCCAAGCAG
CCCGAGCGCAAGCCGCTGCAGACCTTTGATCCGTATGCCTATCCCAAGCC
GAATCAGATGCAGCCGGTCAAGTACCAGCAGCAGCAACAGCATCCGCATA
CGCAGTTTCAGAATGCTTCCGCTGGAGGAGGCGGTGGCGGTGCTGCTGGG
CTTCAATACGATCCAAATACAAATACGCAATTGTTTTACGCGTCGCCGGC
GTCATCGTCATCGAACAAGCAACCGCAACAACCGCAACAGCAACAGCAGC
AGCAGCAGTCCCAGCTACAACAAAGCAATTCTGTCATATTCAATCACTCG
GGCCAGCAACACCAACCACATCAACAGCAGCAGAATGAAATGTCCAAGTC
CGCATTGGGGCTGCACTTCATCGAGACAGCAAAGCCCGTCATTCAAGATG
ATGCTGATGGTCACTTAATTTACCACACCGGAGACATTCTCCATCACAGA
TATAAGATCATGGCCACACTGGGCGAGGGAACTTTTGGACGTGTGGTCAA
GGTCAAAGATATGGAGCGTGATTACTGCATGGCTTTAAAGATTATTAAGA
ACGTGGAAAAGTACCGCGAAGCTGCCAAGCTGGAAATAAATGCTTTGGAA
AAGATTGCCCAAAAGGATCCGCATTGTGATCATTTGTGCGTCAAAATGAT
TGACTGGTTTGATTATCATGGACACATGTGTATAGTTTTTGAAATGTTGG
GGCTCAGTGTTTTCGATTTTTTGCGAGAGAACAACTATGAGCCATACCCG
CTGGACCAAGTGCGCCATATGGCCTATCAATTATGCTACTCTGTGAAATT
TCTACATGACAATCGTTTAACGCACACAGATCTCAAGCCGGAGAACATAC
TCTTCGTCGACTCGGATTATACTTCTCACTATAATCATAAGATTAACCGC
GAGGTGCGCCGCGTCAAGAATACGGACGTTCGCCTAATCGACTTCGGGTC
GGCCACCTTCGACCACGAGCACCACAGCACAATTGTCTCGACGCGACATT
ACCGCGCGCCAGAGGTCATACTGGAGCTGGGGTGGTCACAGCCGTGTGAC
GTTTGGTCCATTGGGTGCATCTTGTTCGAACTGTATCTGGGAATCACGCT
CTTCCAAACGCACGACAATCGCGAACACTTGGCCATGATGGAGCGAATCT
TGGGACAAATACCATATCGCATGGCACGCAATCATACTCTTTATAGCAAA
ACCAAAACAAAGTACTTCTATCATGGTAAGTTAGATTGGGATGAGAAGTC
CAGTGCGGGTCGCTACGTCCGTGATCACTGCAAGCCGTTGTTCCTGTGCC
AGCTGAGCGACAGCGAGGACCACTGTGAGCTCTTCAGTCTGATCAAGAAG
ATGCTGGAGTACGAGCCGTCGTCACGCATCACGTTAGGTGAGGCCCTGCA
TCATCCGTTCTTTGATAGGCTGCCACCACACCATCGAGTAGGTGAGGTCA
GCAACAAGCAGCCCCTTTCGTCGGGCAGCAGCAGCCGCGAACGATCGCAT
AGCCTCTCCAGATGAAAGCTTTCTAGACCAT
BS10437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doa-RY | 4608 | CG42320-PY | 2110..4608 | 17..2515 | 12495 | 100 | Plus |
Doa-RP | 6138 | CG42320-PP | 3640..6138 | 17..2515 | 12495 | 100 | Plus |
Doa-RK | 2499 | CG42320-PK | 1..2499 | 17..2515 | 12495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doa-RY | 5756 | CG42320-RY | 2228..4726 | 17..2515 | 12495 | 100 | Plus |
Doa-RP | 7311 | CG42320-RP | 3783..6281 | 17..2515 | 12495 | 100 | Plus |
Doa-RK | 3693 | CG42320-RK | 165..2663 | 17..2515 | 12495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28909819..28911177 | 17..1375 | 6795 | 100 | Plus |
3R | 32079331 | 3R | 28921340..28921551 | 2178..2389 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 28920689..28920860 | 1723..1894 | 860 | 100 | Plus |
3R | 32079331 | 3R | 28920920..28921091 | 1895..2066 | 860 | 100 | Plus |
3R | 32079331 | 3R | 28921613..28921742 | 2386..2515 | 650 | 100 | Plus |
3R | 32079331 | 3R | 28920353..28920467 | 1518..1632 | 575 | 100 | Plus |
3R | 32079331 | 3R | 28921155..28921269 | 2064..2178 | 575 | 100 | Plus |
3R | 32079331 | 3R | 28920537..28920627 | 1633..1723 | 455 | 100 | Plus |
3R | 32079331 | 3R | 28919490..28919567 | 1374..1451 | 390 | 100 | Plus |
3R | 32079331 | 3R | 28920225..28920291 | 1452..1518 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2792 | 134..625 | 347 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2990 | 302..946 | 337 | 54 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2854 | 394..945 | 313 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7018 | 427..720 | 299 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6470..6944 | 57..514 | 281 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2958 | 42..503 | 279 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2987 | 885..1273 | 276 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..3025 | 134..524 | 252 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7053 | 137..483 | 226 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2944 | 42..630 | 216 | 53.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2435 | 1213..1336 | 215 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6951 | 242..495 | 204 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6545..6859 | 42..352 | 195 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6885 | 1218..1335 | 195 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6892 | 439..625 | 187 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..7026 | 1040..1354 | 183 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6894 | 134..272 | 176 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6952 | 238..463 | 175 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6861 | 1218..1332 | 171 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..7009 | 134..363 | 167 | 58.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 971..1150 | 1155..1339 | 157 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6819 | 1228..1335 | 156 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2518 | 131..272 | 152 | 60.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6871 | 456..625 | 151 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1099..1161 | 121..182 | 150 | 73 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6867..6921 | 1218..1272 | 149 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6871 | 42..174 | 145 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6859 | 565..625 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2527 | 22..272 | 143 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2396 | 565..625 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2420 | 565..625 | 142 | 71.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 961..1150 | 142..352 | 139 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1602 | 1261..1347 | 134 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6780 | 566..624 | 133 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6841 | 565..625 | 133 | 70.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1083..1141 | 1047..1105 | 133 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2381 | 566..625 | 131 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7112 | 565..935 | 131 | 53 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1599 | 134..178 | 126 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6796 | 565..625 | 125 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2838 | 132..166 | 121 | 82.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..7016 | 1047..1328 | 120 | 54 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6916..7012 | 2372..2279 | 118 | 59.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1114 | 137..179 | 118 | 77.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1116 | 302..351 | 115 | 70 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1086..1126 | 312..352 | 115 | 75.6 | Plus |
BS10437.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:24 Download gff for
BS10437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RP | 3635..6138 | 13..2515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:29 Download gff for
BS10437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RP | 3640..6137 | 17..2514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:16 Download gff for
BS10437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RK | 165..2662 | 17..2514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:31 Download gff for
BS10437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RP | 3640..6137 | 17..2514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:34 Download gff for
BS10437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doa-RK | 165..2662 | 17..2514 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:34 Download gff for
BS10437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28921341..28921549 | 2179..2387 | 100 | -> | Plus |
3R | 28921615..28921741 | 2388..2514 | 100 | | Plus |
3R | 28920690..28920860 | 1724..1894 | 100 | -> | Plus |
3R | 28920920..28921089 | 1895..2064 | 100 | -> | Plus |
3R | 28921156..28921269 | 2065..2178 | 100 | -> | Plus |
3R | 28909819..28911177 | 17..1375 | 100 | -> | Plus |
3R | 28919492..28919567 | 1376..1451 | 100 | -> | Plus |
3R | 28920225..28920291 | 1452..1518 | 100 | -> | Plus |
3R | 28920354..28920467 | 1519..1632 | 100 | -> | Plus |
3R | 28920537..28920627 | 1633..1723 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:16 Download gff for
BS10437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24735541..24736899 | 17..1375 | 100 | -> | Plus |
arm_3R | 24745214..24745289 | 1376..1451 | 100 | -> | Plus |
arm_3R | 24745947..24746013 | 1452..1518 | 100 | -> | Plus |
arm_3R | 24746076..24746189 | 1519..1632 | 100 | -> | Plus |
arm_3R | 24746259..24746349 | 1633..1723 | 100 | -> | Plus |
arm_3R | 24746412..24746582 | 1724..1894 | 100 | -> | Plus |
arm_3R | 24746642..24746811 | 1895..2064 | 100 | -> | Plus |
arm_3R | 24746878..24746991 | 2065..2178 | 100 | -> | Plus |
arm_3R | 24747063..24747271 | 2179..2387 | 100 | -> | Plus |
arm_3R | 24747337..24747463 | 2388..2514 | 100 | | Plus |
BS10437.pep Sequence
Translation from 16 to 2514
> BS10437.pep
MVAANLEVPTSSSSSAATKRQKDVDNKLEKCLNDMLKLKTSSNNNSTSNS
NNNAIMSHSLTGEHKDPKTALEGPTSSSSSSSSKYIGESQIPVPVQLYDP
QKPLLQQQQQQQRICYPIGKSNSTSQLPMGGYQRLLQHQQQQHHQQQQQQ
HQEQQQYPQHKRPFLNWNSFACSAMNGASDPFMQQQHMPAHQQQQHLPHK
LQQSYSSSHVPKQAPKSGLAMFLQKNTNKENKFGQPMQQQPPGMMPQMYG
YQAPQQQSKIGYPRTGAPLTHSASFSSAQRPTALQFHQQHQQQQHLQQQQ
QHPQQQQHQHSSFGVGMMSRNYYNMPKQPERKPLQTFDPYAYPKPNQMQP
VKYQQQQQHPHTQFQNASAGGGGGGAAGLQYDPNTNTQLFYASPASSSSN
KQPQQPQQQQQQQQSQLQQSNSVIFNHSGQQHQPHQQQQNEMSKSALGLH
FIETAKPVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDME
RDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDY
HGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNR
LTHTDLKPENILFVDSDYTSHYNHKINREVRRVKNTDVRLIDFGSATFDH
EHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCILFELYLGITLFQTHD
NREHLAMMERILGQIPYRMARNHTLYSKTKTKYFYHGKLDWDEKSSAGRY
VRDHCKPLFLCQLSDSEDHCELFSLIKKMLEYEPSSRITLGEALHHPFFD
RLPPHHRVGEVSNKQPLSSGSSSRERSHSLSR*
BS10437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doa-PY | 1535 | CG42320-PY | 704..1535 | 1..832 | 4477 | 100 | Plus |
Doa-PP | 2045 | CG42320-PP | 1214..2045 | 1..832 | 4477 | 100 | Plus |
Doa-PK | 832 | CG33553-PC | 1..832 | 1..832 | 4477 | 100 | Plus |
Doa-PX | 889 | CG42320-PX | 508..889 | 451..832 | 2067 | 99.2 | Plus |
Doa-PAA | 398 | CG42320-PAA | 26..398 | 454..832 | 2009 | 98.4 | Plus |