Clone Sequence Records
BS10439.3prime Sequence
684 bp (683 high quality bases) assembled on 2006-04-19
> BS10439.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGTCGCTGGAGACAGAGCTCTTGGAC
TCGCGAATGGAGGCAGAACGGCGGCGCTTGGCCTCCTCGCGCTTGGCCTT
GGACTCCTTCTTGCGCTGCACCAACAGCTTGGCGTAGTCGGCGGAAGCCT
CCTTGGAAGCGATCTGGCGCTTCTTCTTCAGCGCAATGCGACGGTGCTTG
CGCTGCAGCACAACGGGGGTGATCAGGCGCTGAATTTTGGGGGCCTTGGA
GGTGGCCTTCTTGTTGTCCTTGGCGGGCAAAGGGCGACGCACAACGAAGC
GACGCACATCATCTTCCTTGCTCAAGTTGTAGAGCTTGCGGATCTTGCTA
GCACGCTTGGGTCCCAGGCGACGTGGGATGGTGGTGTCGGTGAGACCGGG
AATGTCCTTCTCACCCTTCTTCAAGACGACCAGAGCCAGCACAGACATGT
TGGCGTCCACGATGCATCCACGCACAGACTTGCGCTTACGCTCGCCAGTG
CGGCGTGGACGGTAGCAGGAGTGTCCCTTCTTCAGGAGCAGACGCACACG
GCCGTGGGTCAAGACACCCTGCTTCATGGGGAATCCCTGCTTGTCGTTGC
CGCCGGCGATGCGCAGCTGGTAGCCCTTCCACTCGTCACCGAGGATATCG
GCCTCCACAACCTGTCCCATGTCGACTGATAACT
BS10439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10944-PB | 747 | RpS6-RB | 94..747 | 670..17 | 3270 | 100 | Minus |
CG10944-PA | 654 | RpS6-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
CG10944-PC | 756 | RpS6-RC | 103..756 | 670..17 | 3270 | 100 | Minus |
CG11386-PA | 408 | CG11386-RA | 284..347 | 156..93 | 145 | 89 | Minus |
CG33222-PA | 408 | CG33222-RA | 284..347 | 156..93 | 145 | 89 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 1195 | CG10944-RA | 412..1066 | 670..16 | 3275 | 100 | Minus |
RpS6-RB | 960 | CG10944-RB | 177..831 | 670..16 | 3275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7899753..7900290 | 16..553 | 2690 | 100 | Plus |
X | 23542271 | X | 7900802..7900920 | 552..670 | 595 | 100 | Plus |
X | 23542271 | X | 7897401..7897490 | 88..177 | 270 | 86.7 | Plus |
X | 23542271 | X | 7898591..7898680 | 88..177 | 270 | 86.7 | Plus |
X | 23542271 | X | 7897603..7897725 | 416..538 | 195 | 77.2 | Plus |
X | 23542271 | X | 7898793..7898915 | 416..538 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:01:53 has no hits.
BS10439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:03 Download gff for
BS10439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-PC | 98..756 | 17..677 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:50 Download gff for
BS10439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10944-PC | 98..756 | 17..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:28 Download gff for
BS10439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..831 | 16..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:58 Download gff for
BS10439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..831 | 16..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:58 Download gff for
BS10439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7899753..7900289 | 16..552 | 100 | <- | Plus |
X | 7900803..7900925 | 553..677 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:28 Download gff for
BS10439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7793786..7794322 | 16..552 | 100 | <- | Plus |
arm_X | 7794836..7794958 | 553..677 | 97 | | Plus |
BS10439.5prime Sequence
684 bp (683 high quality bases) assembled on 2006-04-19
> BS10439.5prime
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGTAAAAGCTTTCTAGACC
BS10439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10944-PB | 747 | RpS6-RB | 94..747 | 17..670 | 3270 | 100 | Plus |
CG10944-PA | 654 | RpS6-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
CG10944-PC | 756 | RpS6-RC | 103..756 | 17..670 | 3270 | 100 | Plus |
CG11386-PA | 408 | CG11386-RA | 284..347 | 531..594 | 145 | 89 | Plus |
CG33222-PA | 408 | CG33222-RA | 284..347 | 531..594 | 145 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 1195 | CG10944-RA | 412..1066 | 17..671 | 3275 | 100 | Plus |
RpS6-RB | 960 | CG10944-RB | 177..831 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7899753..7900290 | 671..134 | 2690 | 100 | Minus |
X | 23542271 | X | 7900802..7900920 | 135..17 | 595 | 100 | Minus |
X | 23542271 | X | 7897401..7897490 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7898591..7898680 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7897603..7897725 | 271..149 | 195 | 77.2 | Minus |
X | 23542271 | X | 7898793..7898915 | 271..149 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:34:10 has no hits.
BS10439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:04 Download gff for
BS10439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-PC | 98..756 | 10..670 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:51 Download gff for
BS10439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10944-PC | 98..756 | 10..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:22 Download gff for
BS10439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..831 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:17:02 Download gff for
BS10439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 172..831 | 10..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:17:02 Download gff for
BS10439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7899753..7900289 | 135..671 | 100 | <- | Minus |
X | 7900803..7900925 | 10..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:22 Download gff for
BS10439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7793786..7794322 | 135..671 | 100 | <- | Minus |
arm_X | 7794836..7794958 | 10..134 | 97 | | Minus |
BS10439.complete Sequence
686 bp (686 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636661
> BS10439.complete
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGTAAAAGCTTTCTAGACCAT
BS10439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 654 | CG10944-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
RpS6-RB | 747 | CG10944-PB | 94..747 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RA | 1195 | CG10944-RA | 412..1066 | 17..671 | 3275 | 100 | Plus |
RpS6-RB | 960 | CG10944-RB | 177..831 | 17..671 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7899753..7900290 | 671..134 | 2690 | 100 | Minus |
X | 23542271 | X | 7900802..7900920 | 135..17 | 595 | 100 | Minus |
X | 23542271 | X | 7897401..7897490 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7898591..7898680 | 599..510 | 270 | 86.7 | Minus |
X | 23542271 | X | 7897603..7897725 | 271..149 | 195 | 77.2 | Minus |
X | 23542271 | X | 7898793..7898915 | 271..149 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:50:26 has no hits.
BS10439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:00 Download gff for
BS10439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:26 Download gff for
BS10439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RA | 338..997 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:52 Download gff for
BS10439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 177..828 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:00 Download gff for
BS10439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RA | 338..997 | 10..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:53 Download gff for
BS10439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 177..828 | 17..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:53 Download gff for
BS10439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7899756..7900289 | 135..668 | 100 | <- | Minus |
X | 7900803..7900920 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:52 Download gff for
BS10439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7794836..7794953 | 17..134 | 100 | | Minus |
arm_X | 7793789..7794322 | 135..668 | 100 | <- | Minus |
BS10439.pep Sequence
Translation from 16 to 669
> BS10439.pep
MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGH
SCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR
RLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLI
TPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEAKRR
RSASIRESKSSVSSDKK*
BS10439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-PA | 217 | CG10944-PA | 1..217 | 1..217 | 1087 | 100 | Plus |
RpS6-PB | 248 | CG10944-PB | 32..248 | 1..217 | 1087 | 100 | Plus |