Clone BS10439 Report

Search the DGRC for BS10439

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptRpS6-RA
Protein status:BS10439.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10439.3prime Sequence

684 bp (683 high quality bases) assembled on 2006-04-19

> BS10439.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGTCGCTGGAGACAGAGCTCTTGGAC
TCGCGAATGGAGGCAGAACGGCGGCGCTTGGCCTCCTCGCGCTTGGCCTT
GGACTCCTTCTTGCGCTGCACCAACAGCTTGGCGTAGTCGGCGGAAGCCT
CCTTGGAAGCGATCTGGCGCTTCTTCTTCAGCGCAATGCGACGGTGCTTG
CGCTGCAGCACAACGGGGGTGATCAGGCGCTGAATTTTGGGGGCCTTGGA
GGTGGCCTTCTTGTTGTCCTTGGCGGGCAAAGGGCGACGCACAACGAAGC
GACGCACATCATCTTCCTTGCTCAAGTTGTAGAGCTTGCGGATCTTGCTA
GCACGCTTGGGTCCCAGGCGACGTGGGATGGTGGTGTCGGTGAGACCGGG
AATGTCCTTCTCACCCTTCTTCAAGACGACCAGAGCCAGCACAGACATGT
TGGCGTCCACGATGCATCCACGCACAGACTTGCGCTTACGCTCGCCAGTG
CGGCGTGGACGGTAGCAGGAGTGTCCCTTCTTCAGGAGCAGACGCACACG
GCCGTGGGTCAAGACACCCTGCTTCATGGGGAATCCCTGCTTGTCGTTGC
CGCCGGCGATGCGCAGCTGGTAGCCCTTCCACTCGTCACCGAGGATATCG
GCCTCCACAACCTGTCCCATGTCGACTGATAACT

BS10439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10944-PB 747 RpS6-RB 94..747 670..17 3270 100 Minus
CG10944-PA 654 RpS6-RA 1..654 670..17 3270 100 Minus
CG10944-PC 756 RpS6-RC 103..756 670..17 3270 100 Minus
CG11386-PA 408 CG11386-RA 284..347 156..93 145 89 Minus
CG33222-PA 408 CG33222-RA 284..347 156..93 145 89 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 1195 CG10944-RA 412..1066 670..16 3275 100 Minus
RpS6-RB 960 CG10944-RB 177..831 670..16 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899753..7900290 16..553 2690 100 Plus
X 23542271 X 7900802..7900920 552..670 595 100 Plus
X 23542271 X 7897401..7897490 88..177 270 86.7 Plus
X 23542271 X 7898591..7898680 88..177 270 86.7 Plus
X 23542271 X 7897603..7897725 416..538 195 77.2 Plus
X 23542271 X 7898793..7898915 416..538 195 77.2 Plus
Blast to na_te.dros performed on 2015-02-10 22:01:53 has no hits.

BS10439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:03 Download gff for BS10439.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-PC 98..756 17..677 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:50 Download gff for BS10439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10944-PC 98..756 17..677 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:28 Download gff for BS10439.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..831 16..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:58 Download gff for BS10439.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..831 16..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:58 Download gff for BS10439.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7899753..7900289 16..552 100 <- Plus
X 7900803..7900925 553..677 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:28 Download gff for BS10439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793786..7794322 16..552 100 <- Plus
arm_X 7794836..7794958 553..677 97   Plus

BS10439.5prime Sequence

684 bp (683 high quality bases) assembled on 2006-04-19

> BS10439.5prime
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGTAAAAGCTTTCTAGACC

BS10439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10944-PB 747 RpS6-RB 94..747 17..670 3270 100 Plus
CG10944-PA 654 RpS6-RA 1..654 17..670 3270 100 Plus
CG10944-PC 756 RpS6-RC 103..756 17..670 3270 100 Plus
CG11386-PA 408 CG11386-RA 284..347 531..594 145 89 Plus
CG33222-PA 408 CG33222-RA 284..347 531..594 145 89 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 1195 CG10944-RA 412..1066 17..671 3275 100 Plus
RpS6-RB 960 CG10944-RB 177..831 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899753..7900290 671..134 2690 100 Minus
X 23542271 X 7900802..7900920 135..17 595 100 Minus
X 23542271 X 7897401..7897490 599..510 270 86.7 Minus
X 23542271 X 7898591..7898680 599..510 270 86.7 Minus
X 23542271 X 7897603..7897725 271..149 195 77.2 Minus
X 23542271 X 7898793..7898915 271..149 195 77.2 Minus
Blast to na_te.dros performed on 2015-02-11 18:34:10 has no hits.

BS10439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:04 Download gff for BS10439.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-PC 98..756 10..670 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:51 Download gff for BS10439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10944-PC 98..756 10..670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:22 Download gff for BS10439.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..831 10..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:17:02 Download gff for BS10439.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 172..831 10..671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:17:02 Download gff for BS10439.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7899753..7900289 135..671 100 <- Minus
X 7900803..7900925 10..134 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:22 Download gff for BS10439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793786..7794322 135..671 100 <- Minus
arm_X 7794836..7794958 10..134 97   Minus

BS10439.complete Sequence

686 bp (686 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636661

> BS10439.complete
GAAGTTATCAGTCGACATGGGACAGGTTGTGGAGGCCGATATCCTCGGTG
ACGAGTGGAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAG
GGATTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCT
CCTGAAGAAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTA
AGCGCAAGTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTG
GCTCTGGTCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGA
CACCACCATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCA
AGCTCTACAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGT
CGCCCTTTGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAA
AATTCAGCGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCA
TTGCGCTGAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGAC
TACGCCAAGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGA
GGAGGCCAAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTG
TCTCCAGCGACAAGAAGTAAAAGCTTTCTAGACCAT

BS10439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 654 CG10944-PA 1..654 17..670 3270 100 Plus
RpS6-RB 747 CG10944-PB 94..747 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 1195 CG10944-RA 412..1066 17..671 3275 100 Plus
RpS6-RB 960 CG10944-RB 177..831 17..671 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899753..7900290 671..134 2690 100 Minus
X 23542271 X 7900802..7900920 135..17 595 100 Minus
X 23542271 X 7897401..7897490 599..510 270 86.7 Minus
X 23542271 X 7898591..7898680 599..510 270 86.7 Minus
X 23542271 X 7897603..7897725 271..149 195 77.2 Minus
X 23542271 X 7898793..7898915 271..149 195 77.2 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:26 has no hits.

BS10439.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:00 Download gff for BS10439.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:26 Download gff for BS10439.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 338..997 10..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:52 Download gff for BS10439.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 177..828 17..668 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:00 Download gff for BS10439.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 338..997 10..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:53 Download gff for BS10439.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 177..828 17..668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:53 Download gff for BS10439.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899756..7900289 135..668 100 <- Minus
X 7900803..7900920 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:52 Download gff for BS10439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7794836..7794953 17..134 100   Minus
arm_X 7793789..7794322 135..668 100 <- Minus

BS10439.pep Sequence

Translation from 16 to 669

> BS10439.pep
MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGH
SCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR
RLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLI
TPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEAKRR
RSASIRESKSSVSSDKK*

BS10439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-PA 217 CG10944-PA 1..217 1..217 1087 100 Plus
RpS6-PB 248 CG10944-PB 32..248 1..217 1087 100 Plus