Clone Sequence Records
BS10442.3prime Sequence
889 bp (880 high quality bases) assembled on 2006-04-19
> BS10442.3prime
ATGGTCTAGAAAGCTTCTAGTATATGTCCGGACAGCCTTCGAAGTTCTGA
GCCGCCTTGGCCTCCCAGTAAGTGTTCTTGAAAACGTGCACATATTCCTC
GCTTCCCTCCTCCTTTTCGCGCTTGAACCACATGGGCTCATAGGCTGGAT
ATGGCCTACCCTCTGCGGCGGCCTCCTCCGCCTCGTTTTCCCGCCGGCGG
CGTTCTGTGCGCTGCTTCTCCTCCAGGCGCAATTTCTCCTTATTCGACTC
GTCCCAGTCGCCCTGCTCCATCAGCCTTTGGTCGGGACGAAGGCGTGAGT
CCGTCGGCGCCACGCCCTCCTCCTCTTCGTTGAGCTGGCAGGCTAGTGTA
GTGAAGTTATAAAACTTGTCCGAATCCGGAGGAGCAGGACGACGGCGCCA
GGCCAGCTTAAACTCGCCCGTGGTGTACGTTGGACTGCTGACCGATCCCG
ATGTCTTGAGCACCGGTGCAATCTCGATCTTCATGTCCCACGTACCACGC
ACCACCCACTTGACCTCGTTGTCTTTGTTCATTACCACGCCTTTGACGCT
TCGCTGCACATCGCGACTAAAGTACGAGTAGGGGATAAAGTTCAGGATGC
ATTTGTGCCCCTCTGCCGCCTGCGATCCCCGGATTTCCATTTCGCCATGC
TGGTCCACCCACAGTTTGCCCACAATGATGTTGTTCACCGTTGTGGTCAC
CTTGCGCCAGGAATAGCGCCTGCCGCTGTTCGGGAATTGCACATAGACGC
CGCCCAAGGGATTGATTTGAACGTACTTGCCGCGGAACTTGCTGGTCATG
GAGAACTCCTGCCAGCACGTCCAGTTCTTACTTTCGCAGTGCAGCGCCGC
CACCGGTGGATGATGGGACACTTGCTCGGCCAGGCACCG
BS10442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6708-PA | 2355 | Osbp-RA | 1483..2355 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osbp-RA | 3248 | CG6708-RA | 1846..2719 | 889..16 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24935398..24936148 | 16..766 | 3755 | 100 | Plus |
| 3R | 32079331 | 3R | 24936255..24936377 | 767..889 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:24:11 has no hits.
BS10442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:07 Download gff for
BS10442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-PA | 1483..2355 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:56 Download gff for
BS10442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6708-PA | 1483..2355 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:28:30 Download gff for
BS10442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 1846..2723 | 13..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:06 Download gff for
BS10442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 1846..2723 | 13..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:06 Download gff for
BS10442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24935394..24936148 | 13..766 | 99 | <- | Plus |
| 3R | 24936255..24936377 | 767..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:28:30 Download gff for
BS10442.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20761116..20761870 | 13..766 | 99 | <- | Plus |
| arm_3R | 20761977..20762099 | 767..889 | 100 | | Plus |
BS10442.5prime Sequence
933 bp (767 high quality bases) assembled on 2006-04-19
> BS10442.5prime
GAAGTTATCAGTCGACATGACAGACGCCGCTGGCAATGCGCTGGCCGAGA
AGGGCCTACCGGAGATGAAAGGCTGGCTGCTAAAGTGGACCAATTACATC
AAGGGCTACCAGCGGCGATGGTTCGTGCTATCCAAGGGCGTGCTGAGCTA
CTACCGCAACCAGTCGGAGATTAACCACACGTGCCGGGGCACCATATCGC
TTCACGGAGCCCTCATCCACACGGTCGATTCGTGCACGTTCGTAATCTCG
AACGGCGGCACCCAAACGTTCCACATCAAGGCCGGCACCGAGGTGGAGCG
CCAGTCGTGGGTCACCGCCCTGGAGCTGGCAAAGGCTAAGGCAATCCGGG
CCATCGAATGCGAGGAGGAGGAGGAGACGGAAACGGCACATGTGGTGCCC
AGCCAGGAGATCAGCTCGGTGGTCCGAGATCTCACCGATCGGCTGGAGAG
CATGCGTACCTGCTACGACCTGATCACCAAGCATGGCGCAGCCTTGCAGC
GCGCTCTCAACGATCTGGAGACGAACGAGGAGGAGTCGCTGGGCAGCCGC
ACGAAGATCGTCAACGAGAGGGCGACCCTCTTCCGGATAACCTCCAATGC
GATGATCAACGCCGGCAACGACTACCTGCACACGGCAGAGGCACAAGGCC
ATAAGTGGTCCAAGATGCTACACCACGAGCGCGAGCAACGCCAGCGGCTG
GAGGAGATCATCGAGCAGATGGCAAAGCAGCAGTCGCAGATGGAGCAGGC
CGCCGTACTGGTGCGCCAGAACAAGCCGGTGTCATCCACCTCGGGGGCAG
GCACCGCCGGCTCCTTGGTGACCTCAGATGAGGAGATGGAGTTTTTCGAT
GCCGAGGAGCACGGCTATTCAGGCAGCGGTCGCTCCCCTGAGTCTTCGGA
TTGCGAGCGGGGTACCTTTATCTTAAAGATGCA
BS10442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6708-PA | 2355 | Osbp-RA | 1..917 | 17..933 | 4585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osbp-RA | 3248 | CG6708-RA | 363..1280 | 16..933 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24936943..24937860 | 933..16 | 4590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:38:08 has no hits.
BS10442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:08 Download gff for
BS10442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:57 Download gff for
BS10442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6708-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 14:32:02 Download gff for
BS10442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 363..1279 | 16..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:17:11 Download gff for
BS10442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 363..1279 | 16..932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:17:11 Download gff for
BS10442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24936944..24937860 | 16..932 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 14:32:02 Download gff for
BS10442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20762666..20763582 | 16..932 | 100 | | Minus |
BS10442.complete Sequence
2387 bp assembled on 2007-11-30
GenBank Submission: FJ636663
> BS10442.complete
GAAGTTATCAGTCGACATGACAGACGCCGCTGGCAATGCGCTGGCCGAGA
AGGGCCTACCGGAGATGAAAGGCTGGCTGCTAAAGTGGACCAATTACATC
AAGGGCTACCAGCGGCGATGGTTCGTGCTATCCAAGGGCGTGCTGAGCTA
CTACCGCAACCAGTCGGAGATTAACCACACGTGCCGGGGCACCATATCGC
TTCACGGAGCCCTCATCCACACGGTCGATTCGTGCACGTTCGTAATCTCG
AACGGCGGCACCCAAACGTTCCACATCAAGGCCGGCACCGAGGTGGAGCG
CCAGTCGTGGGTCACCGCCCTGGAGCTGGCAAAGGCTAAGGCAATCCGGG
CCATCGAATGCGAGGAGGAGGAGGAGACGGAAACGGCACATGTGGTGCCC
AGCCAGGAGATCAGCTCGGTGGTCCGAGATCTCACCGATCGGCTGGAGAG
CATGCGTACCTGCTACGACCTGATCACCAAGCATGGCGCAGCCTTGCAGC
GCGCTCTCAACGATCTGGAGACGAACGAGGAGGAGTCGCTGGGCAGCCGC
ACGAAGATCGTCAACGAGAGGGCGACCCTCTTCCGGATAACCTCCAATGC
GATGATCAACGCCGGCAACGACTACCTGCACACGGCAGAGGCACAAGGCC
ATAAGTGGTCCAAGATGCTACACCACGAGCGCGAGCAACGCCAGCGGCTG
GAGGAGATCATCGAGCAGATGGCAAAGCAGCAGTCGCAGATGGAGCAGGC
CGCCGTACTGGTGCGCCAGAACAAGCCGGTGTCATCCACCTCGGGGGCAG
GCACCGCCGGCTCCTTGGTGACCTCAGATGAGGAGATGGAGTTTTTCGAT
GCCGAGGAGCACGGCTATTCAGGCAGCGGTCGCTCCCCTGAGTCTTCGGA
TTGCGAGCGGGGTACCTTTATCTTAAAGATGCACAAGCGCCGCAGTAGTA
GCGAGGACCAGGTGGAGGGCCATTTGGAGGGCAGTTCCTCGGAGAGTGAC
GAGCAGAAGCGCACCGTGCAAACGGTGCAGCAGGTGTGCCTGGTGAGTGC
GCCACGGGTAGCATCGGGCGGTCAGGGCGACGACGATGACGACGTGGATA
AGGCGTTGCCGGCCAAGGAGAGCACCGACTCCATCTACGGACGCAACTGG
AATCCGGATCTGATTAAGAAGCGACGCGACCGTGTGCCAGATAAACCGAA
CCACCCCATCAGCCTGTGGGGCATCATGAAAAATTGCATTGGCAAGGATC
TGTCCAAAATTCCCATGCCCATCAACTTTAACGAACCGCTGTCCATGCTG
CAGCGCCTGGTGGAGGACTATGAGTACACGGAGATACTCGACTACGCGGC
CACCTGCCAGGACGAGTGCGAGCAGCTGGCCTACATAGCCGCCTTTACCG
TGTCCGCCTATGCCACGACCACAAACCGCACAGGCAAGCCCTTCAATCCG
CTGCTGGGCGAGACCTACGAGTGTGACCGGATGGATGACTATGGTTGGCG
GTGCCTGGCCGAGCAAGTGTCCCATCATCCACCGGTGGCGGCGCTGCACT
GCGAAAGTAAGAACTGGACGTGCTGGCAGGAGTTCTCCATGACCAGCAAG
TTCCGCGGCAAGTACGTTCAAATCAATCCCTTGGGCGGCGTCTATGTGCA
ATTCCCGAACAGCGGCAGGCGCTATTCCTGGCGCAAGGTGACCACAACGG
TGAACAACATCATTGTGGGCAAACTGTGGGTGGACCAGCATGGCGAAATG
GAAATCCGGGGATCGCAGGCGGCAGAGGGGCACAAATGCATCCTGAACTT
TATCCCCTACTCGTACTTTAGTCGCGATGTGCAGCGAAGCGTCAAAGGCG
TGGTAATGAACAAAGACAACGAGGTCAAGTGGGTGGTGCGTGGTACGTGG
GACATGAAGATCGAGATTGCACCGGTGCTCAAGACATCGGGATCGGTCAG
CAGTCCAACGTACACCACGGGCGAGTTTAAGCTGGCCTGGCGCCGTCGTC
CTGCTCCTCCGGATTCGGACAAGTTTTATAACTTCACTACACTAGCCTGC
CAGCTCAACGAAGAGGAGGAGGGCGTGGCGCCGACGGACTCACGCCTTCG
TCCCGACCAAAGGCTGATGGAGCAGGGCGACTGGGACGAGTCGAATAAGG
AGAAATTGCGCCTGGAGGAGAAGCAGCGCACAGAACGCCGCCGGCGGGAA
AACGAGGCGGAGGAGGCCGCCGCAGAGGGTAGGCCATATCCAGCCTATGA
GCCCATGTGGTTCAAGCGCGAAAAGGAGGAGGGAAGCGAGGAATATGTGC
ACGTTTTCAAGAACACTTACTGGGAGGCCAAGGCGGCTCAGAACTTCGAA
GGCTGTCCGGACATATACTAGAAGCTTTCTAGACCAT
BS10442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osbp-RA | 2355 | CG6708-PA | 1..2355 | 17..2371 | 11775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osbp-RA | 3248 | CG6708-RA | 363..2719 | 16..2372 | 11785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24936255..24937860 | 1621..16 | 8030 | 100 | Minus |
| 3R | 32079331 | 3R | 24935398..24936148 | 2372..1622 | 3755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:21 has no hits.
BS10442.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:26 Download gff for
BS10442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 1..2355 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:42:59 Download gff for
BS10442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 378..2738 | 16..2375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:50 Download gff for
BS10442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 364..2718 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:31 Download gff for
BS10442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 379..2733 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:41 Download gff for
BS10442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osbp-RA | 364..2718 | 17..2371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:41 Download gff for
BS10442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24935399..24936148 | 1622..2371 | 100 | <- | Minus |
| 3R | 24936255..24937859 | 17..1621 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:50 Download gff for
BS10442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20761121..20761870 | 1622..2371 | 100 | <- | Minus |
| arm_3R | 20761977..20763581 | 17..1621 | 100 | | Minus |
BS10442.pep Sequence
Translation from 16 to 2370
> BS10442.pep
MTDAAGNALAEKGLPEMKGWLLKWTNYIKGYQRRWFVLSKGVLSYYRNQS
EINHTCRGTISLHGALIHTVDSCTFVISNGGTQTFHIKAGTEVERQSWVT
ALELAKAKAIRAIECEEEEETETAHVVPSQEISSVVRDLTDRLESMRTCY
DLITKHGAALQRALNDLETNEEESLGSRTKIVNERATLFRITSNAMINAG
NDYLHTAEAQGHKWSKMLHHEREQRQRLEEIIEQMAKQQSQMEQAAVLVR
QNKPVSSTSGAGTAGSLVTSDEEMEFFDAEEHGYSGSGRSPESSDCERGT
FILKMHKRRSSSEDQVEGHLEGSSSESDEQKRTVQTVQQVCLVSAPRVAS
GGQGDDDDDVDKALPAKESTDSIYGRNWNPDLIKKRRDRVPDKPNHPISL
WGIMKNCIGKDLSKIPMPINFNEPLSMLQRLVEDYEYTEILDYAATCQDE
CEQLAYIAAFTVSAYATTTNRTGKPFNPLLGETYECDRMDDYGWRCLAEQ
VSHHPPVAALHCESKNWTCWQEFSMTSKFRGKYVQINPLGGVYVQFPNSG
RRYSWRKVTTTVNNIIVGKLWVDQHGEMEIRGSQAAEGHKCILNFIPYSY
FSRDVQRSVKGVVMNKDNEVKWVVRGTWDMKIEIAPVLKTSGSVSSPTYT
TGEFKLAWRRRPAPPDSDKFYNFTTLACQLNEEEEGVAPTDSRLRPDQRL
MEQGDWDESNKEKLRLEEKQRTERRRRENEAEEAAAEGRPYPAYEPMWFK
REKEEGSEEYVHVFKNTYWEAKAAQNFEGCPDIY*
BS10442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osbp-PA | 784 | CG6708-PA | 1..784 | 1..784 | 4168 | 100 | Plus |
| CG3860-PB | 457 | CG3860-PB | 25..449 | 398..772 | 636 | 35.5 | Plus |
| CG3860-PA | 455 | CG3860-PA | 25..447 | 398..772 | 624 | 36.5 | Plus |
| cert-PC | 601 | CG7207-PC | 41..313 | 16..283 | 247 | 28.2 | Plus |
| cert-PA | 601 | CG7207-PA | 41..313 | 16..283 | 247 | 28.2 | Plus |
