Clone Sequence Records
BS10443.3prime Sequence
899 bp (787 high quality bases) assembled on 2006-04-19
> BS10443.3prime
ATGGTCTAGAAAGCTTCTAATCCTTGAGAAATAGCTTGCGAAAGTCATCG
TTTGACTTGGGCACAGCAGCTGGCATCTCCTCTTCTTTTTTCTCATCTCC
CTTTTGCTCCACTCCACTTTGCTCCTCTCCTATTTGATCATCTCCTTTTT
GCTCCTCTCCTTTTGGCTCCTCTCCTTTTTGCTCCTCTCCTTTTTGCTCC
TCTCCTTTTTGCTCATCTCGTTCTTGAACATCTCCTTTTTGCTCCTCTCC
ATTAGCCTCGCGCTTGATGGCCACGTCGACGGATGCCGAAGTGGATGATA
TGTCCCCCGGCTCGGGCAGAAGCAAGCGCAGCTTCTTGGCAGCCACCTCT
TGGCGCACCAGAGTCGTGGGTATAAGCGAGGTGGGCACACGTCGCTTGGG
CGCCACACTTGGCTTGACAGCTGATGTGCCCCTCGGCGGTGGGTTTGAAA
TGGCCACAGAGATATTCATGCCCTTGAATAGACAACCATCTCGTCCAGCC
ACTGCTCGTTGCGCCTCGCCCGGCTTCTCGAACTCAACGTATGCAATGCC
CTTGAACTGCTTGTTTAGCTTGTGCACCAGGCGCACATCTTTGATGGTGC
CGAAAGGCGAGAAGAGTTCGTGCAGCTCCTCCTTGCTGCAAGCGGGATGC
AGATTTCTTACAAAGATCTTATTGATTTCCATGTTGGGCGAATACTTAAA
GTTCGATTCCTTGGCCTCTGCATTCGCTGGCCCCTTGACTTTCGATGGCG
GTGACGTAGCTCCACCAGATGGCTCGGTTCTGGACTTCTTAATGCCATGC
TTCTGCTGCTGCTGCTGTTGCTGTTGTTGCTCATGCGCCTGGCGACGTCG
CTGCTCGCGATTCAGTGGCTCACGATTCGTTTGTTGCTGCTGCTGGCGC
BS10443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3312-PB | 2826 | Rnp4F-RB | 1944..2826 | 899..17 | 4415 | 100 | Minus |
| CG3312-PA | 2826 | Rnp4F-RA | 1944..2826 | 899..17 | 4415 | 100 | Minus |
| CG5466-PA | 1785 | CG5466-RA | 908..936 | 831..803 | 145 | 100 | Minus |
| CG18023-PA | 2589 | Eip78C-RA | 563..591 | 831..803 | 145 | 100 | Minus |
| CG8118-PA | 4785 | mam-RA | 2420..2448 | 831..803 | 145 | 100 | Minus |
| CG8118-PB | 4785 | mam-RB | 2420..2448 | 831..803 | 145 | 100 | Minus |
| CG2083-PA | 6759 | CG2083-RA | 5702..5730 | 831..803 | 145 | 100 | Minus |
| CG7952-PB | 1347 | gt-RB | 224..251 | 831..804 | 140 | 100 | Minus |
| CG7952-PB | 1347 | gt-RB | 449..476 | 831..804 | 140 | 100 | Minus |
| CG1864-PB | 3237 | Hr38-RB | 1343..1370 | 831..804 | 140 | 100 | Minus |
| CG3978-PB | 1467 | pnr-RB | 904..930 | 829..803 | 135 | 100 | Minus |
| CG7368-PB | 1593 | CG7368-RB | 1462..1488 | 829..803 | 135 | 100 | Minus |
| CG12488-PA | 1608 | CG12488-RA | 1529..1555 | 831..805 | 135 | 100 | Minus |
| CG3978-PA | 1623 | pnr-RA | 1060..1086 | 829..803 | 135 | 100 | Minus |
| CG3695-PA | 4320 | MED23-RA | 4117..4143 | 829..803 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rnp4F-RF | 3116 | CG3312-RF | 2026..2908 | 899..17 | 4415 | 100 | Minus |
| Rnp4F-RD | 3146 | CG3312-RD | 2056..2938 | 899..17 | 4415 | 100 | Minus |
| Rnp4F-RA | 3323 | CG3312-RA | 2233..3115 | 899..17 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5319136..5319582 | 17..463 | 2235 | 100 | Plus |
| X | 23542271 | X | 5319998..5320209 | 688..899 | 1060 | 100 | Plus |
| X | 23542271 | X | 5319813..5319933 | 567..687 | 605 | 100 | Plus |
| X | 23542271 | X | 5319654..5319756 | 464..566 | 515 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 16:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6948 | 895..740 | 202 | 63.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2483 | 895..739 | 197 | 60.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6953 | 899..671 | 184 | 57.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6906 | 899..798 | 176 | 68.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2512 | 895..798 | 173 | 66.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6946 | 894..770 | 172 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2499 | 899..744 | 169 | 59.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6864 | 899..798 | 168 | 62.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2569 | 895..773 | 152 | 61.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1149 | 896..804 | 151 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2844..2995 | 895..740 | 149 | 58 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2964 | 898..744 | 137 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6944 | 895..799 | 125 | 58.8 | Minus |
BS10443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:09 Download gff for
BS10443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-PB | 1944..2826 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:00:59 Download gff for
BS10443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3312-PB | 1944..2826 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:59 Download gff for
BS10443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RD | 2056..2940 | 13..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:54:12 Download gff for
BS10443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RA | 2233..3117 | 13..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:54:12 Download gff for
BS10443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5319134..5319582 | 13..463 | 99 | <- | Plus |
| X | 5319654..5319756 | 464..566 | 100 | <- | Plus |
| X | 5319813..5319933 | 567..687 | 100 | <- | Plus |
| X | 5319998..5320209 | 688..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:59 Download gff for
BS10443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5213167..5213615 | 13..463 | 99 | <- | Plus |
| arm_X | 5213687..5213789 | 464..566 | 100 | <- | Plus |
| arm_X | 5213846..5213966 | 567..687 | 100 | <- | Plus |
| arm_X | 5214031..5214242 | 688..899 | 100 | | Plus |
BS10443.5prime Sequence
926 bp (790 high quality bases) assembled on 2006-04-19
> BS10443.5prime
GAAGTTATCAGTCGACATGGACGCCGACAAGCAGCTGGAAAGGCAGCTGG
AGAAGGAGCTGGACGAGATGCCGGCAGAGGATTTGGACGACGATGCGTAT
GACGAGTATGATCTGATCGTGATACCCGATCAGGGCAAGGGCTCGCCGCA
GCAGGGGCACAGTGAGTCGCCGCAGCAGGAGGAGGAGCACAAGTCGGAGG
AGCTGCGCCAACGATCGCGCCCAACCTGGCCACCGTCGTCCGCCGGCGGG
GATATGACCACCATTGAGTTGATCTCATCGGACGACGAGCCGTCAGTGGA
GGAGACTGAGGGAGGCAATGCCGCTGGCCGTGGCAGAGCGCGCAATGATT
CCAGCAGCAGTAGCGATGATGTGGGCGTGATCGAAGGCTCGGAATTGGAA
TCGAACAGTGAGGTGTCCAGTGACAGTGACAGTGATAGCGACAACGCTGG
CGGCGGAAATCAGCTAGAGCGCTCGTATCAGGAGCTGAATGCGTTGCCCA
GCAAAAAGTTTGCCCAAATGGTCTCGCTCATTGGAATCGCATTCAAACTG
AATGATCTGGAAAAGATCGAGTCATCGGTGCTGGAGCTGCAAAATTTGGC
CACTGTGCCGGCTCACGTGTGGCTGAAGTATCTAAAGGCCCGCCTGGTCG
TCACCCAAACGGACGAGGAGCGCAAGGCATTCGAGGAGCAGTGTGCCAAA
GCGTTGGGCTACTACTACAGCATACCGCTGTCCGAATACGTTGTCAACTA
CCTGGTGGATCAGGGCAACGTACAGAACCATGTGCTGTGGGCCAAACTGC
TGGCGGACTACGACGTGGAGCGTCCAGACTTTGGCGACAAGCTGCGTTCG
CTGATATCGACNATTACGGACGAAAATGAGGCTGCCGCCTTTGTGGAATG
CTGCAAAGCACTGCGTCACCTGGACG
BS10443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3312-PB | 2826 | Rnp4F-RB | 1..882 | 17..898 | 4391 | 99.8 | Plus |
| CG3312-PA | 2826 | Rnp4F-RA | 1..882 | 17..898 | 4391 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rnp4F-RF | 3116 | CG3312-RF | 82..994 | 16..926 | 4504 | 99.7 | Plus |
| Rnp4F-RD | 3146 | CG3312-RD | 112..1024 | 16..926 | 4504 | 99.7 | Plus |
| Rnp4F-RA | 3323 | CG3312-RA | 289..1201 | 16..926 | 4504 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5321819..5322331 | 543..31 | 2565 | 100 | Minus |
| X | 23542271 | X | 5321295..5321503 | 926..720 | 934 | 98.6 | Minus |
| X | 23542271 | X | 5321561..5321737 | 720..544 | 885 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 532..746 | 317..113 | 116 | 55 | Minus |
BS10443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:10 Download gff for
BS10443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-PA | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:00 Download gff for
BS10443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3312-PA | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:48 Download gff for
BS10443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RD | 112..1024 | 16..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:03:07 Download gff for
BS10443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RA | 289..1201 | 16..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:03:07 Download gff for
BS10443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5321295..5321503 | 720..926 | 98 | <- | Minus |
| X | 5321562..5321737 | 544..719 | 100 | <- | Minus |
| X | 5321819..5322327 | 35..543 | 100 | <- | Minus |
| X | 5322390..5322408 | 16..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:48 Download gff for
BS10443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5215328..5215536 | 720..926 | 98 | <- | Minus |
| arm_X | 5215595..5215770 | 544..719 | 100 | <- | Minus |
| arm_X | 5215852..5216360 | 35..543 | 100 | <- | Minus |
| arm_X | 5216423..5216441 | 16..34 | 100 | | Minus |
BS10443.complete Sequence
2858 bp assembled on 2007-11-30
GenBank Submission: FJ636664
> BS10443.complete
GAAGTTATCAGTCGACATGGACGCCGACAAGCAGCTGGAAAGGCAGCTGG
AGAAGGAGCTGGACGAGATGCCGGCAGAGGATTTGGACGACGATGCGTAT
GACGAGTATGATCTGATCGTGATACCCGATCAGGGCAAGGGCTCGCCGCA
GCAGGGGCACAGTGAGTCGCCGCAGCAGGAGGAGGAGCACAAGTCGGAGG
AGCTGCGCCAACGATCGCGCCCAACCTGGCCACCGTCGTCCGCCGGCGGG
GATATGACCACCATTGAGTTGATCTCATCGGACGACGAGCCGTCAGTGGA
GGAGACTGAGGGAGGCAATGCCGCTGGCCGTGGCAGAGCGCGCAATGATT
CCAGCAGCAGTAGCGATGATGTGGGCGTGATCGAAGGCTCGGAATTGGAA
TCGAACAGTGAGGTGTCCAGTGACAGTGACAGTGATAGCGACAACGCTGG
CGGCGGAAATCAGCTAGAGCGCTCGTATCAGGAGCTGAATGCGTTGCCCA
GCAAAAAGTTTGCCCAAATGGTCTCGCTCATTGGAATCGCATTCAAACTG
AATGATCTGGAAAAGATCGAGTCATCGGTGCTGGAGCTGCAAAATTTGGC
CACTGTGCCGGCTCACGTGTGGCTGAAGTATCTAAAGGCCCGCCTGGTCG
TCACCCAAACGGACGAGGAGCGCAAGGCATTCGAGGAGCAGTGTGCCAAA
GCGTTGGGCTACTACTACAGCATACCGCTGTCCGAATACGTTGTCAACTA
CCTGGTGGATCAGGGCAACGTACAGAACCATGTGCTGTGGGCCAAACTGC
TGGCGGACTACGACGTGGAGCGTCCAGACTTTGGCGACAAGCTGCGTTCG
CTGATATCGACAATTACGGACGAAAATGAGGCTGCCGCCTTTGTGGAAAT
GCTGCAAAAGCACTGCGTCACCTGGACGTGCAACGTGGAGCAGCGGCAGA
TGATCAAGTCCGTTGTGGACAAGTTTAAGCAACATCTGGACGAGACAACG
CGTGGTTGGGATTGGTCTGAGCAACACAAGGCTCATGTCTACGATGTGGA
GACATTATCCCTTGACGATGACCTCAAAAACGCTGTGATCCGTTTCATAT
TCGAACGCTCGGTGGCCAAGTTTCCCATTGTCGATGTGCTCTGGTTATCC
TACATTGAGTTCATTCAGTTCGAAGGCGTCACTGTGCCGGAGAATGAGGA
TGAGAATGAGGTAACCGCCGAAATGGTAGCCAAACGGGCCAAACGCTTGG
GCAAAGGTTTTCTGCGCAACACGGAACTCGATTTGGCCAATCGTGGTGTG
CGCAGTCATCCCAGTGTACAATTGAATCATCGTTTCCTCGACCTAATGGA
GCGCTCGGACTTTGAGTTGGCGGAAGTGGATGAAGAGATACGTCTCATAT
TGCAGCGCATTGTGACCGACATGGATATGACCGTGGAGCTGCATCTGGAC
TATCTGGCCTATCGTATTCGCAACACCAATGCCAGCGATGAGCAGCAGGT
CGCCAGTCTGCGTGCCGCCTTCAATCATGCTTGGGAGGAGCTAACCGTGC
TCTACGGCGACCAGGCGGACACCAGGTACGAGGTGCTGCAGTTGTGGGCC
CAAGTTGAGTACACGCAACTGGGGAGTCCGGACAATGGCCGTGAGATTTG
GCGCCAAATAATGGGCTATCCGGGCAGCTCGATACGCGGCCTGCTCTGGC
TGAACTTTGCCCAGATGGAAAGCGAATACAATGGTGGCCACGGCACACGC
GATGTCCTTCGCAAAGCTCTCTCGCAGCCCGTCCTCGAGAATGGCCTTAT
GGTGCAGGAGTTTTTTCGCCGCTATGAACGTTGCTATGGCACCTACGAGT
CCATTGCCGCCTGCCAGGCCCTCGATCTGCCTGTCGAGTATGTGAAGCCG
CGTTCCCGCATTAAGCCCAACTCACAGTCGGCTTATCCTCGCCAGCAGAA
GCTTAAGCCGCGCCAGCAGCAGCAACAAACGAATCGTGAGCCACTGAATC
GCGAGCAGCGACGTCGCCAGGCGCATGAGCAACAACAGCAACAGCAGCAG
CAGCAGAAGCATGGCATTAAGAAGTCCAGAACCGAGCCATCTGGTGGAGC
TACGTCACCGCCATCGAAAGTCAAGGGGCCAGCGAATGCAGAGGCCAAGG
AATCGAACTTTAAGTATTCGCCCAACATGGAAATCAATAAGATCTTTGTA
AGAAATCTGCATCCCGCTTGCAGCAAGGAGGAGCTGCACGAACTCTTCTC
GCCTTTCGGCACCATCAAAGATGTGCGCCTGGTGCACAAGCTAAACAAGC
AGTTCAAGGGCATTGCATACGTTGAGTTCGAGAAGCCGGGCGAGGCGCAA
CGAGCAGTGGCTGGACGAGATGGTTGTCTATTCAAGGGCATGAATATCTC
TGTGGCCATTTCAAACCCACCGCCGAGGGGCACATCAGCTGTCAAGCCAA
GTGTGGCGCCCAAGCGACGTGTGCCCACCTCGCTTATACCCACGACTCTG
GTGCGCCAAGAGGTGGCTGCCAAGAAGCTGCGCTTGCTTCTGCCCGAGCC
GGGGGACATATCATCCACTTCGGCATCCGTCGACGTGGCCATCAAGCGCG
AGGCTAATGGAGAGGAGCAAAAAGGAGATGTTCAAGAACGAGATGAGCAA
AAAGGAGAGGAGCAAAAAGGAGAGGAGCAAAAAGGAGAGGAGCCAAAAGG
AGAGGAGCAAAAAGGAGATGATCAAATAGGAGAGGAGCAAAGTGGAGTGG
AGCAAAAGGGAGATGAGAAAAAAGAAGAGGAGATGCCAGCTGCTGTGCCC
AAGTCAAACGATGACTTTCGCAAGCTATTTCTCAAGGATTAGAAGCTTTC
TAGACCAT
BS10443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rnp4F-RF | 2826 | CG3312-PF | 1..2826 | 17..2842 | 14130 | 100 | Plus |
| Rnp4F-RD | 2826 | CG3312-PD | 1..2826 | 17..2842 | 14130 | 100 | Plus |
| Rnp4F-RA | 2826 | CG3312-PA | 1..2826 | 17..2842 | 14130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rnp4F-RF | 3116 | CG3312-RF | 82..2908 | 16..2842 | 14135 | 100 | Plus |
| Rnp4F-RD | 3146 | CG3312-RD | 112..2938 | 16..2842 | 14135 | 100 | Plus |
| Rnp4F-RA | 3323 | CG3312-RA | 289..3115 | 16..2842 | 14135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5320558..5321503 | 1665..720 | 4730 | 100 | Minus |
| X | 23542271 | X | 5321819..5322331 | 543..31 | 2565 | 100 | Minus |
| X | 23542271 | X | 5319998..5320505 | 2171..1664 | 2540 | 100 | Minus |
| X | 23542271 | X | 5319136..5319582 | 2842..2396 | 2235 | 100 | Minus |
| X | 23542271 | X | 5321561..5321737 | 720..544 | 885 | 100 | Minus |
| X | 23542271 | X | 5319813..5319933 | 2292..2172 | 605 | 100 | Minus |
| X | 23542271 | X | 5319654..5319756 | 2395..2293 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6948 | 1943..2119 | 235 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6946 | 1943..2089 | 201 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6906 | 1943..2061 | 198 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6953 | 1956..2188 | 195 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2499 | 1943..2115 | 191 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2995 | 1943..2119 | 191 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6864 | 1943..2061 | 190 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2512 | 1943..2061 | 188 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2407 | 1960..2061 | 186 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2964 | 1944..2115 | 159 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2569 | 1964..2086 | 152 | 61.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1149 | 1956..2055 | 152 | 65.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1163 | 1919..2048 | 150 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6944 | 1943..2060 | 131 | 56.8 | Plus |
BS10443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:28 Download gff for
BS10443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RD | 1..2826 | 17..2842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:01 Download gff for
BS10443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RD | 142..2970 | 16..2846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:30 Download gff for
BS10443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RA | 290..3115 | 17..2842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:30 Download gff for
BS10443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RD | 143..2968 | 17..2842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:55 Download gff for
BS10443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RA | 290..3115 | 17..2842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:55 Download gff for
BS10443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5319813..5319933 | 2172..2292 | 100 | <- | Minus |
| X | 5319136..5319582 | 2396..2842 | 100 | <- | Minus |
| X | 5319654..5319756 | 2293..2395 | 100 | <- | Minus |
| X | 5319998..5320504 | 1665..2171 | 100 | <- | Minus |
| X | 5320559..5321503 | 720..1664 | 100 | <- | Minus |
| X | 5321562..5321737 | 544..719 | 100 | <- | Minus |
| X | 5321819..5322327 | 35..543 | 100 | <- | Minus |
| X | 5322390..5322407 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:30 Download gff for
BS10443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5213169..5213615 | 2396..2842 | 100 | <- | Minus |
| arm_X | 5213687..5213789 | 2293..2395 | 100 | <- | Minus |
| arm_X | 5213846..5213966 | 2172..2292 | 100 | <- | Minus |
| arm_X | 5214031..5214537 | 1665..2171 | 100 | <- | Minus |
| arm_X | 5214592..5215536 | 720..1664 | 100 | <- | Minus |
| arm_X | 5215595..5215770 | 544..719 | 100 | <- | Minus |
| arm_X | 5215852..5216360 | 35..543 | 100 | <- | Minus |
| arm_X | 5216423..5216440 | 17..34 | 100 | | Minus |
BS10443.pep Sequence
Translation from 16 to 2841
> BS10443.pep
MDADKQLERQLEKELDEMPAEDLDDDAYDEYDLIVIPDQGKGSPQQGHSE
SPQQEEEHKSEELRQRSRPTWPPSSAGGDMTTIELISSDDEPSVEETEGG
NAAGRGRARNDSSSSSDDVGVIEGSELESNSEVSSDSDSDSDNAGGGNQL
ERSYQELNALPSKKFAQMVSLIGIAFKLNDLEKIESSVLELQNLATVPAH
VWLKYLKARLVVTQTDEERKAFEEQCAKALGYYYSIPLSEYVVNYLVDQG
NVQNHVLWAKLLADYDVERPDFGDKLRSLISTITDENEAAAFVEMLQKHC
VTWTCNVEQRQMIKSVVDKFKQHLDETTRGWDWSEQHKAHVYDVETLSLD
DDLKNAVIRFIFERSVAKFPIVDVLWLSYIEFIQFEGVTVPENEDENEVT
AEMVAKRAKRLGKGFLRNTELDLANRGVRSHPSVQLNHRFLDLMERSDFE
LAEVDEEIRLILQRIVTDMDMTVELHLDYLAYRIRNTNASDEQQVASLRA
AFNHAWEELTVLYGDQADTRYEVLQLWAQVEYTQLGSPDNGREIWRQIMG
YPGSSIRGLLWLNFAQMESEYNGGHGTRDVLRKALSQPVLENGLMVQEFF
RRYERCYGTYESIAACQALDLPVEYVKPRSRIKPNSQSAYPRQQKLKPRQ
QQQQTNREPLNREQRRRQAHEQQQQQQQQQKHGIKKSRTEPSGGATSPPS
KVKGPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTI
KDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVAISN
PPPRGTSAVKPSVAPKRRVPTSLIPTTLVRQEVAAKKLRLLLPEPGDISS
TSASVDVAIKREANGEEQKGDVQERDEQKGEEQKGEEQKGEEPKGEEQKG
DDQIGEEQSGVEQKGDEKKEEEMPAAVPKSNDDFRKLFLKD*
BS10443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rnp4F-PF | 941 | CG3312-PF | 1..941 | 1..941 | 4864 | 100 | Plus |
| Rnp4F-PD | 941 | CG3312-PD | 1..941 | 1..941 | 4864 | 100 | Plus |
| Rnp4F-PA | 941 | CG3312-PA | 1..941 | 1..941 | 4864 | 100 | Plus |
| Rnp4F-PB | 941 | CG3312-PB | 1..941 | 1..941 | 4864 | 100 | Plus |
