Clone BS10444 Report

Search the DGRC for BS10444

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptDrep-2-RA
Protein status:BS10444.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10444.3prime Sequence

887 bp (791 high quality bases) assembled on 2006-04-19

> BS10444.3prime
ATGGTCTAGAAAGCTTCTAAATTCTGTCCTCCTCATCCTCTTCCTCCTCC
TCCTCGACCTCCTCGCCGTTCTCCTCTAGCTCCTCCTTGTAGCCAGGATG
CTCAGAGATGGCATAGTAATTGCCATTGTAAATGACGCCCAGTTCGCGCA
GCGCATCGCCGCGTATTGTCGCCTTTATCGTCCAGTTGTAGCAGTCGTCT
GACTCGGACTCGCGATCCAATCGCTCCACGTCAAGGATCTTGGAGTTGAG
GCGTTCCAGTATGATGCCGATGTCCTTGATGCTGAGGTGACGCTTCTGGT
CCACCGACAACTGGTCGATCAGCAGCAGAAACTTCTCCGTCGTCGTCTTG
TCGTCCTCCATCACCGTGTTCTCCGTTTCGCTCTCGGAGCTATCCCGCTC
GGGAGCGATGTCCAGGAATCGCACATGGCCCTTGGCGCCCGAGGAGCGGC
GTTGCATGCTGCCGCTTCCGCCGCCACCGCTGCCGCCCAGCATAGGATCC
ATAACCGATGGTGCCGACTGCGGCTGGGGACTGCTGCTTCCGTCCTGGAT
GGGCGACGTGGCCACGCTCTTGTGCACAGCGATCTTGCGCCCCTCCTCGT
GCAGCGCACAGCAGTGGAAGTCGCACTCGGTGGTGCTGGGACTGCCCGCC
CTGCTGGGCGTGTGGGCGTGGTGGGCGCATTCCGGCGTGTGCACATGGAC
AGCTCCCACACCCACGCCTACGGTGCTGTCGAAGGAGCTTCCCTGCTTGG
AGAGTCGCCTGCTGCCGCCGGGTATCACAACTCCTGGCGGCAGAACAACG
CCACCGGGATGGTATATGCTCGCCGGTCCGTCGTCGCTGATCACCGTTAT
TTGAGGGCTGGCATAGCGCGGCTGGGAGGACTGCGAC

BS10444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1975-PA 1449 Rep2-RA 579..1449 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 5839 CG1975-RC 1580..2451 887..16 4360 100 Minus
Drep-2-RD 1827 CG1975-RD 641..1512 887..16 4360 100 Minus
Drep-2-RB 5203 CG1975-RB 1555..2426 887..16 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9298562..9299433 887..16 4360 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:30:03 has no hits.

BS10444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:11 Download gff for BS10444.3prime
Subject Subject Range Query Range Percent Splice Strand
Rep2-PA 579..1449 17..887 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:01 Download gff for BS10444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1975-PA 579..1449 17..887 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:48:30 Download gff for BS10444.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RB 1555..2426 16..887 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:03 Download gff for BS10444.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RB 1555..2426 16..887 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:03 Download gff for BS10444.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9298562..9299433 16..887 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:48:30 Download gff for BS10444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5186067..5186938 16..887 100   Minus

BS10444.5prime Sequence

956 bp (826 high quality bases) assembled on 2006-04-19

> BS10444.5prime
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAGCAGCA
GTCCCC

BS10444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1975-PA 1449 Rep2-RA 1..940 17..956 4700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 5839 CG1975-RC 1002..1941 17..956 4700 100 Plus
Drep-2-RA 5229 CG1975-RA 1003..1942 17..956 4700 100 Plus
Drep-2-RD 1827 CG1975-RD 74..1002 28..956 4645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9298266..9298923 299..956 3290 100 Plus
2R 25286936 2R 9297264..9297536 27..299 1365 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:31:59 has no hits.

BS10444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:12 Download gff for BS10444.5prime
Subject Subject Range Query Range Percent Splice Strand
Rep2-PA 1..940 17..956 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:03 Download gff for BS10444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1975-PA 1..940 17..956 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:42 Download gff for BS10444.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 991..1942 6..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:35 Download gff for BS10444.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 991..1942 6..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:35 Download gff for BS10444.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9297269..9297536 32..299 100 -> Plus
2R 9298267..9298923 300..956 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:42 Download gff for BS10444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5184774..5185041 32..299 100 -> Plus
arm_2R 5185772..5186428 300..956 100   Plus

BS10444.complete Sequence

1481 bp (1481 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636665

> BS10444.complete
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAGCAGCA
GTCCCCAGCCGCAGTCGGCACCATCGGTTATGGATCCTATGCTGGGCGGC
AGCGGTGGCGGCGGAAGCGGCAGCATGCAACGCCGCTCCTCGGGCGCCAA
GGGCCATGTGCGATTCCTGGACATCGCTCCCGAGCGGGATAGCTCCGAGA
GCGAAACGGAGAACACGGTGATGGAGGACGACAAGACGACGACGGAGAAG
TTTCTGCTGCTGATCGACCAGTTGTCGGTGGACCAGAAGCGTCACCTCAG
CATCAAGGACATCGGCATCATACTGGAACGCCTCAACTCCAAGATCCTTG
ACGTGGAGCGATTGGATCGCGAGTCCGAGTCAGACGACTGCTACAACTGG
ACGATAAAGGCGACAATACGCGGCGATGCGCTGCGCGAACTGGGCGTCAT
TTACAATGGCAATTACTATGCCATCTCTGAGCATCCTGGCTACAAGGAGG
AGCTAGAGGAGAACGGCGAGGAGGTCGAGGAGGAGGAGGAAGAGGATGAG
GAGGACAGAATTTAGAAGCTTTCTAGACCAT

BS10444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 1449 CG1975-PC 1..1449 17..1465 7245 100 Plus
Drep-2-RA 1449 CG1975-PA 1..1449 17..1465 7245 100 Plus
Drep-2-RD 1494 CG1975-PD 57..1494 28..1465 7190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-RC 5839 CG1975-RC 1002..2451 17..1466 7250 100 Plus
Drep-2-RA 5229 CG1975-RA 1003..2452 17..1466 7250 100 Plus
Drep-2-RD 1827 CG1975-RD 74..1512 28..1466 7195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9298266..9299433 299..1466 5840 100 Plus
2R 25286936 2R 9297264..9297536 27..299 1365 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:24:33 has no hits.

BS10444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:01 Download gff for BS10444.complete
Subject Subject Range Query Range Percent Splice Strand
Rep2-RA 1..1449 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:26 Download gff for BS10444.complete
Subject Subject Range Query Range Percent Splice Strand
Rep2-RA 990..2451 6..1466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:28 Download gff for BS10444.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 1003..2451 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:02 Download gff for BS10444.complete
Subject Subject Range Query Range Percent Splice Strand
Rep2-RA 990..2451 6..1466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:48 Download gff for BS10444.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-2-RA 1003..2451 17..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:48 Download gff for BS10444.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9297264..9297536 27..299 100 -> Plus
2R 9298267..9299432 300..1465 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:28 Download gff for BS10444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5184769..5185041 27..299 100 -> Plus
arm_2R 5185772..5186937 300..1465 100   Plus

BS10444.pep Sequence

Translation from 16 to 1464

> BS10444.pep
MAREESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVR
VVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWYPTGVDVIKAAISAIP
KIVCETIHALELHDETPSWKIMDNKGRVTVVLHWDQRQGGGSGGGGGGGG
AGGGVGSMCSGLGSSNGLLSSDKYSPSKKGLSAQSSLDNKSVSSQSSQPR
YASPQITVISDDGPASIYHPGGVVLPPGVVIPGGSRRLSKQGSSFDSTVG
VGVGAVHVHTPECAHHAHTPSRAGSPSTTECDFHCCALHEEGRKIAVHKS
VATSPIQDGSSSPQPQSAPSVMDPMLGGSGGGGSGSMQRRSSGAKGHVRF
LDIAPERDSSESETENTVMEDDKTTTEKFLLLIDQLSVDQKRHLSIKDIG
IILERLNSKILDVERLDRESESDDCYNWTIKATIRGDALRELGVIYNGNY
YAISEHPGYKEELEENGEEVEEEEEEDEEDRI*

BS10444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-2-PC 482 CG1975-PC 1..482 1..482 2520 100 Plus
Drep-2-PA 482 CG1975-PA 1..482 1..482 2520 100 Plus
Drep-2-PD 497 CG1975-PD 17..497 2..482 2503 99.6 Plus
Drep-2-PB 549 CG1975-PB 72..549 5..482 2501 100 Plus