Clone Sequence Records
BS10444.3prime Sequence
887 bp (791 high quality bases) assembled on 2006-04-19
> BS10444.3prime
ATGGTCTAGAAAGCTTCTAAATTCTGTCCTCCTCATCCTCTTCCTCCTCC
TCCTCGACCTCCTCGCCGTTCTCCTCTAGCTCCTCCTTGTAGCCAGGATG
CTCAGAGATGGCATAGTAATTGCCATTGTAAATGACGCCCAGTTCGCGCA
GCGCATCGCCGCGTATTGTCGCCTTTATCGTCCAGTTGTAGCAGTCGTCT
GACTCGGACTCGCGATCCAATCGCTCCACGTCAAGGATCTTGGAGTTGAG
GCGTTCCAGTATGATGCCGATGTCCTTGATGCTGAGGTGACGCTTCTGGT
CCACCGACAACTGGTCGATCAGCAGCAGAAACTTCTCCGTCGTCGTCTTG
TCGTCCTCCATCACCGTGTTCTCCGTTTCGCTCTCGGAGCTATCCCGCTC
GGGAGCGATGTCCAGGAATCGCACATGGCCCTTGGCGCCCGAGGAGCGGC
GTTGCATGCTGCCGCTTCCGCCGCCACCGCTGCCGCCCAGCATAGGATCC
ATAACCGATGGTGCCGACTGCGGCTGGGGACTGCTGCTTCCGTCCTGGAT
GGGCGACGTGGCCACGCTCTTGTGCACAGCGATCTTGCGCCCCTCCTCGT
GCAGCGCACAGCAGTGGAAGTCGCACTCGGTGGTGCTGGGACTGCCCGCC
CTGCTGGGCGTGTGGGCGTGGTGGGCGCATTCCGGCGTGTGCACATGGAC
AGCTCCCACACCCACGCCTACGGTGCTGTCGAAGGAGCTTCCCTGCTTGG
AGAGTCGCCTGCTGCCGCCGGGTATCACAACTCCTGGCGGCAGAACAACG
CCACCGGGATGGTATATGCTCGCCGGTCCGTCGTCGCTGATCACCGTTAT
TTGAGGGCTGGCATAGCGCGGCTGGGAGGACTGCGAC
BS10444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1975-PA | 1449 | Rep2-RA | 579..1449 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 5839 | CG1975-RC | 1580..2451 | 887..16 | 4360 | 100 | Minus |
Drep-2-RD | 1827 | CG1975-RD | 641..1512 | 887..16 | 4360 | 100 | Minus |
Drep-2-RB | 5203 | CG1975-RB | 1555..2426 | 887..16 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9298562..9299433 | 887..16 | 4360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:30:03 has no hits.
BS10444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:11 Download gff for
BS10444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-PA | 579..1449 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:01 Download gff for
BS10444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1975-PA | 579..1449 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:48:30 Download gff for
BS10444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RB | 1555..2426 | 16..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:03 Download gff for
BS10444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RB | 1555..2426 | 16..887 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:03 Download gff for
BS10444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9298562..9299433 | 16..887 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:48:30 Download gff for
BS10444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5186067..5186938 | 16..887 | 100 | | Minus |
BS10444.5prime Sequence
956 bp (826 high quality bases) assembled on 2006-04-19
> BS10444.5prime
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAGCAGCA
GTCCCC
BS10444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1975-PA | 1449 | Rep2-RA | 1..940 | 17..956 | 4700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 5839 | CG1975-RC | 1002..1941 | 17..956 | 4700 | 100 | Plus |
Drep-2-RA | 5229 | CG1975-RA | 1003..1942 | 17..956 | 4700 | 100 | Plus |
Drep-2-RD | 1827 | CG1975-RD | 74..1002 | 28..956 | 4645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9298266..9298923 | 299..956 | 3290 | 100 | Plus |
2R | 25286936 | 2R | 9297264..9297536 | 27..299 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:31:59 has no hits.
BS10444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:12 Download gff for
BS10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-PA | 1..940 | 17..956 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:03 Download gff for
BS10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1975-PA | 1..940 | 17..956 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:15:42 Download gff for
BS10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 991..1942 | 6..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:35 Download gff for
BS10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 991..1942 | 6..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:35 Download gff for
BS10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9297269..9297536 | 32..299 | 100 | -> | Plus |
2R | 9298267..9298923 | 300..956 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:42 Download gff for
BS10444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5184774..5185041 | 32..299 | 100 | -> | Plus |
arm_2R | 5185772..5186428 | 300..956 | 100 | | Plus |
BS10444.complete Sequence
1481 bp (1481 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636665
> BS10444.complete
GAAGTTATCAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCAC
TGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGG
ACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGC
TTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGG
ATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTA
AGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGC
CATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGT
TGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTC
ACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGG
AGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCC
TGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAG
AAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCA
GTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACG
ACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGA
GTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTT
CGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGG
AATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACC
ACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGCAAGAT
CGCTGTGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAGCAGCA
GTCCCCAGCCGCAGTCGGCACCATCGGTTATGGATCCTATGCTGGGCGGC
AGCGGTGGCGGCGGAAGCGGCAGCATGCAACGCCGCTCCTCGGGCGCCAA
GGGCCATGTGCGATTCCTGGACATCGCTCCCGAGCGGGATAGCTCCGAGA
GCGAAACGGAGAACACGGTGATGGAGGACGACAAGACGACGACGGAGAAG
TTTCTGCTGCTGATCGACCAGTTGTCGGTGGACCAGAAGCGTCACCTCAG
CATCAAGGACATCGGCATCATACTGGAACGCCTCAACTCCAAGATCCTTG
ACGTGGAGCGATTGGATCGCGAGTCCGAGTCAGACGACTGCTACAACTGG
ACGATAAAGGCGACAATACGCGGCGATGCGCTGCGCGAACTGGGCGTCAT
TTACAATGGCAATTACTATGCCATCTCTGAGCATCCTGGCTACAAGGAGG
AGCTAGAGGAGAACGGCGAGGAGGTCGAGGAGGAGGAGGAAGAGGATGAG
GAGGACAGAATTTAGAAGCTTTCTAGACCAT
BS10444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 1449 | CG1975-PC | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Drep-2-RA | 1449 | CG1975-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Drep-2-RD | 1494 | CG1975-PD | 57..1494 | 28..1465 | 7190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-RC | 5839 | CG1975-RC | 1002..2451 | 17..1466 | 7250 | 100 | Plus |
Drep-2-RA | 5229 | CG1975-RA | 1003..2452 | 17..1466 | 7250 | 100 | Plus |
Drep-2-RD | 1827 | CG1975-RD | 74..1512 | 28..1466 | 7195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9298266..9299433 | 299..1466 | 5840 | 100 | Plus |
2R | 25286936 | 2R | 9297264..9297536 | 27..299 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:33 has no hits.
BS10444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:01 Download gff for
BS10444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-RA | 1..1449 | 17..1465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:26 Download gff for
BS10444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-RA | 990..2451 | 6..1466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:28 Download gff for
BS10444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 1003..2451 | 17..1465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:02 Download gff for
BS10444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep2-RA | 990..2451 | 6..1466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:48 Download gff for
BS10444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-2-RA | 1003..2451 | 17..1465 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:48 Download gff for
BS10444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9297264..9297536 | 27..299 | 100 | -> | Plus |
2R | 9298267..9299432 | 300..1465 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:28 Download gff for
BS10444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5184769..5185041 | 27..299 | 100 | -> | Plus |
arm_2R | 5185772..5186937 | 300..1465 | 100 | | Plus |
BS10444.pep Sequence
Translation from 16 to 1464
> BS10444.pep
MAREESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVR
VVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWYPTGVDVIKAAISAIP
KIVCETIHALELHDETPSWKIMDNKGRVTVVLHWDQRQGGGSGGGGGGGG
AGGGVGSMCSGLGSSNGLLSSDKYSPSKKGLSAQSSLDNKSVSSQSSQPR
YASPQITVISDDGPASIYHPGGVVLPPGVVIPGGSRRLSKQGSSFDSTVG
VGVGAVHVHTPECAHHAHTPSRAGSPSTTECDFHCCALHEEGRKIAVHKS
VATSPIQDGSSSPQPQSAPSVMDPMLGGSGGGGSGSMQRRSSGAKGHVRF
LDIAPERDSSESETENTVMEDDKTTTEKFLLLIDQLSVDQKRHLSIKDIG
IILERLNSKILDVERLDRESESDDCYNWTIKATIRGDALRELGVIYNGNY
YAISEHPGYKEELEENGEEVEEEEEEDEEDRI*
BS10444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-2-PC | 482 | CG1975-PC | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep-2-PA | 482 | CG1975-PA | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep-2-PD | 497 | CG1975-PD | 17..497 | 2..482 | 2503 | 99.6 | Plus |
Drep-2-PB | 549 | CG1975-PB | 72..549 | 5..482 | 2501 | 100 | Plus |