Clone Sequence Records
BS10445.3prime Sequence
870 bp (824 high quality bases) assembled on 2006-04-19
> BS10445.3prime
ATGGTCTAGAAAGCTTTTAATAATTACACCACTTCTGCAGGTTGTCCGTT
TCATCTTCCTCCTCGTCGCTAGTCGAGGGCGGTGTATCCAGATTGGCGAT
ATCCACATCGAGGTAGTCCTCCTTCGTCTGGAGCAGCTTGTCCATATACT
CAACAATTTCCGTAAAAGGTGGCCGATCGTCGGCGTTGAAATGCCAACAT
TGTCGCATCAGAATGTAGATGTTCATGGAGCATTTCGCTGGTTTCTCCAT
CCGCTGACCGGACATGAGATAGGTGTACAGCTCCTCAGCGGACATGATAG
TTGGATATGGTTGCTGCCCATAGGTCATGATCTCCCACAGCAGGATGCCA
TATGACCAGACATCGCTCTTGGAATCATAGAATTTCTCCTGCAGCGACTC
CGGTGCCATCCATTTGATGGGTAGCCTGCCATTTGTGTTCTTCCGATAGT
AATCCGTGCTTTGAATGTCCCTCGCCAGTCCAAAATCAGCAATCTTCAGC
ACATAATCATCGCTGACGAGCACATTCCTGGCTGCCAAATCTCGATGGAT
GCATCGCCGCGAGGCCAAATAGTCCATTCCTCTGGCAATTTGGTGGGCAA
ATTTGATCAGATCCTTTTCGGTTATCACATGAGCTGGTGGCGATGGCGGC
GGTTGCGAGCTGTCCCTATCCTGATCCCTTCCGAAGGGTCGATTTTTATA
GAGGAAGTCCTTGAGATTTCCGTGTGGCGCATACTCGACAATCACATAGA
GCGGACCATTTTGACTGCAGCAACCAAGTAAGTTAATAATATTGATATGT
CGCCCAATGATCTTCATCACTTCCATTTCCCGCACCAAGCTGGCAATGTC
ATCATCCGTGTGTCCTTCCT
BS10445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7223-PB | 2190 | htl-RB | 1337..2190 | 870..17 | 4270 | 100 | Minus |
| CG7223-PA | 2190 | htl-RA | 1337..2190 | 870..17 | 4270 | 100 | Minus |
| CG7223-PC | 2190 | htl-RC | 1337..2190 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 3492 | CG7223-RC | 2124..2978 | 870..16 | 4275 | 100 | Minus |
| htl-RA | 3611 | CG7223-RA | 2243..3097 | 870..16 | 4275 | 100 | Minus |
| htl-RB | 3838 | CG7223-RB | 2470..3324 | 870..16 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18045730..18046584 | 16..870 | 4275 | 100 | Plus |
| 3L | 28110227 | 3L | 14082274..14082635 | 553..192 | 595 | 77.6 | Minus |
| 3L | 28110227 | 3L | 14081871..14082046 | 862..687 | 280 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:36:52 has no hits.
BS10445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:14 Download gff for
BS10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-PC | 1337..2190 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:05 Download gff for
BS10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7223-PC | 1337..2190 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:34 Download gff for
BS10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 2470..3324 | 16..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:13 Download gff for
BS10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 2470..3324 | 16..870 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:13 Download gff for
BS10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18045730..18046584 | 16..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:34 Download gff for
BS10445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13871452..13872306 | 16..870 | 100 | | Plus |
BS10445.5prime Sequence
812 bp (774 high quality bases) assembled on 2006-04-19
> BS10445.5prime
GAAGTTATCAGTCGACATGGCTGCCGCCTGGAGTTGGCGAGCCAGTCACT
CAACGATCACAATGACAAGCGGATCGCTGGTAGTGCTCTTCCTGTTGCTT
TCGATTTGGCAGCCAGCCGTGCAGGTTGAAGGACGACGCCAAATGGCCAA
TAGCCAGGAGATGATCAAGGATCATTTGGGAGCCAGGAGTCAAAACAAGA
CACCAGCCATCACGAACAATGCTAATCAATCGAGCACATCCAGTGCGGAT
TTGGATGATGGCGCCGCAGATGATGATGATAACAAGGCCGATTTGCCGGT
GAATGTCAGTTCGAAACCCTACTGGCGTAATCCCAAAAAGATGAGTTTTC
TGCAGACGCGACCCTCGGGCTCACTGCTCACCCTCAATTGCCATGCCCTG
GGCAATCCTGAGCCCAATATCACATGGTATCGCAATGGCACCGTCGACTG
GACGCGCGGCTATGGGAGCCTGAAGCGGAATCGATGGACCCTGACGATGG
AGGATCTGGTGCCGGGCGATTGTGGCAACTACACCTGCAAGGTGTGCAAT
TCATTGGGTTGCATTCGTCACGACACCCAGGTGATTGTAAGCGATCGAGT
TAATCACAAACCGATCCTGATGACCGGTCCATTGAATCTCACACTGGTGG
TCAATTCCACAGGCAGCATGCACTGCAAATATCTATCGGACTTGACCAGC
AAGAAGGCGTGGATCTTTGTGCCCTGCCATGGCATGACCAACTGCTCCAA
CAATCGATCCATCATTGCCGAGGATAAGGATCAGTTGGACTTCGTGAACG
TTAGGATGGAGC
BS10445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7223-PB | 2190 | htl-RB | 1..796 | 17..812 | 3980 | 100 | Plus |
| CG7223-PA | 2190 | htl-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
| CG7223-PC | 2190 | htl-RC | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 3492 | CG7223-RC | 788..1583 | 17..812 | 3980 | 100 | Plus |
| htl-RA | 3611 | CG7223-RA | 907..1702 | 17..812 | 3980 | 100 | Plus |
| htl-RB | 3838 | CG7223-RB | 1134..1929 | 17..812 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18047125..18047920 | 812..17 | 3980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:07:43 has no hits.
BS10445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:15 Download gff for
BS10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-PC | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:06 Download gff for
BS10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7223-PC | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:06:47 Download gff for
BS10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..1929 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:19 Download gff for
BS10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..1929 | 17..812 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:19 Download gff for
BS10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18047125..18047920 | 17..812 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:06:47 Download gff for
BS10445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13872847..13873642 | 17..812 | 100 | | Minus |
BS10445.complete Sequence
2222 bp assembled on 2008-08-15
GenBank Submission: KX805635
> BS10445.complete
GAAGTTATCAGTCGACATGGCTGCCGCCTGGAGTTGGCGAGCCAGTCACT
CAACGATCACAATGACAAGCGGATCGCTGGTAGTGCTCTTCCTGTTGCTT
TCGATTTGGCAGCCAGCCGTGCAGGTTGAAGGACGACGCCAAATGGCCAA
TAGCCAGGAGATGATCAAGGATCATTTGGGAGCCAGGAGTCAAAACAAGA
CACCAGCCATCACGAACAATGCTAATCAATCGAGCACATCCAGTGCGGAT
TTGGATGATGGCGCCGCAGATGATGATGATAACAAGGCCGATTTGCCGGT
GAATGTCAGTTCGAAACCCTACTGGCGTAATCCCAAAAAGATGAGTTTTC
TGCAGACGCGACCCTCGGGCTCACTGCTCACCCTCAATTGCCATGCCCTG
GGCAATCCTGAGCCCAATATCACATGGTATCGCAATGGCACCGTCGACTG
GACGCGCGGCTATGGGAGCCTGAAGCGGAATCGATGGACCCTGACGATGG
AGGATCTGGTGCCGGGCGATTGTGGCAACTACACCTGCAAGGTGTGCAAT
TCATTGGGTTGCATTCGTCACGACACCCAGGTGATTGTAAGCGATCGAGT
TAATCACAAACCGATCCTGATGACCGGTCCATTGAATCTCACACTGGTGG
TCAATTCCACAGGCAGCATGCACTGCAAATATCTATCGGACTTGACCAGC
AAGAAGGCGTGGATCTTTGTGCCCTGCCATGGCATGACCAACTGCTCCAA
CAATCGATCCATCATTGCCGAGGATAAGGATCAGTTGGACTTCGTGAACG
TTAGGATGGAGCAGGAGGGCTGGTACACGTGCGTCGAAAGCAACAGCCTG
GGTCAATCCAATAGCACTGCATATCTGCGAGTGGTGCGAAGTCTTCACGT
CTTGGAAGCCGGAGTTGCCAGTGGTTCACTTCACTCGACCAGCTTCGTGT
ATATCTTCGTCTTTGGCGGACTTATTTTCATCTTTATGACCACCCTGTTT
GTGTTCTATGCCATCCGAAAGATGAAACATGAAAAGGTGTTGAAACAACG
CATCGAAACCGTTCACCAGTGGACCAAGAAAGTGATCATCTTCAAGCCCG
AAGGTGGCGGAGACTCCAGTGGTTCCATGGACACCATGATTATGCCGGTG
GTTAGGATACAGAAACAGCGCACCACTGTTCTTCAGAATGGCAACGAGCC
GGCTCCATTCAATGAATATGAATTTCCACTGGACTCGAACTGGGAACTGC
CCAGAAGTCATTTGGTACTGGGTGCCACTTTGGGAGAAGGTGCTTTCGGA
CGAGTGGTCATGGCGGAGGTCAATAATGCCATTGTCGCCGTGAAAATGGT
GAAGGAAGGACACACGGATGATGACATTGCCAGCTTGGTGCGGGAAATGG
AAGTGATGAAGATCATTGGGCGACATATCAATATTATTAACTTACTTGGT
TGCTGCAGTCAAAATGGTCCGCTCTATGTGATTGTCGAGTATGCGCCACA
CGGAAATCTCAAGGACTTCCTCTATAAAAATCGACCCTTCGGAAGGGATC
AGGATAGGGACAGCTCGCAACCGCCGCCATCGCCACCAGCTCATGTGATA
ACCGAAAAGGATCTGATCAAATTTGCCCACCAAATTGCCAGAGGAATGGA
CTATTTGGCCTCGCGGCGATGCATCCATCGAGATTTGGCAGCCAGGAATG
TGCTCGTCAGCGATGATTATGTGCTGAAGATTGCTGATTTTGGACTGGCG
AGGGACATTCAAAGCACGGATTACTATCGGAAGAACACAAATGGCAGGCT
ACCCATCAAATGGATGGCACCGGAGTCGCTGCAGGAGAAATTCTATGATT
CCAAGAGCGATGTCTGGTCATATGGCATCCTGCTGTGGGAGATCATGACC
TATGGGCAGCAACCATATCCAACTATCATGTCCGCTGAGGAGCTGTACAC
CTATCTCATGTCCGGTCAGCGGATGGAGAAACCAGCGAAATGCTCCATGA
ACATCTACATTCTGATGCGACAATGTTGGCATTTCAACGCCGACGATCGG
CCACCTTTTACGGAAATTGTTGAGTATATGGACAAGCTGCTCCAGACGAA
GGAGGACTACCTCGATGTGGATATCGCCAATCTGGATACACCGCCCTCGA
CTAGCGACGAGGAGGAAGATGAAACGGACAACCTGCAGAAGTGGTGTAAT
TATTAAAAGCTTTCTAGACCAT
BS10445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 2190 | CG7223-PC | 1..2190 | 17..2206 | 10950 | 100 | Plus |
| htl-RA | 2190 | CG7223-PA | 1..2190 | 17..2206 | 10950 | 100 | Plus |
| htl-RB | 2190 | CG7223-PB | 1..2190 | 17..2206 | 10950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-RC | 3492 | CG7223-RC | 788..2978 | 17..2207 | 10955 | 100 | Plus |
| htl-RA | 3611 | CG7223-RA | 907..3097 | 17..2207 | 10955 | 100 | Plus |
| htl-RB | 3838 | CG7223-RB | 1134..3324 | 17..2207 | 10955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18045730..18047920 | 2207..17 | 10955 | 100 | Minus |
| 3L | 28110227 | 3L | 14082274..14082635 | 1670..2031 | 595 | 77.6 | Plus |
| 3L | 28110227 | 3L | 14081839..14082046 | 1329..1536 | 320 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:49 has no hits.
BS10445.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:23:23 Download gff for
BS10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RC | 783..2973 | 17..2207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:37:12 Download gff for
BS10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..3321 | 17..2204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:10 Download gff for
BS10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RC | 783..2970 | 17..2204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:57 Download gff for
BS10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| htl-RB | 1134..3321 | 17..2204 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:57 Download gff for
BS10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18045733..18047920 | 17..2204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:37:12 Download gff for
BS10445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13871455..13873642 | 17..2204 | 100 | | Minus |
BS10445.pep Sequence
Translation from 16 to 2205
> BS10445.pep
MAAAWSWRASHSTITMTSGSLVVLFLLLSIWQPAVQVEGRRQMANSQEMI
KDHLGARSQNKTPAITNNANQSSTSSADLDDGAADDDDNKADLPVNVSSK
PYWRNPKKMSFLQTRPSGSLLTLNCHALGNPEPNITWYRNGTVDWTRGYG
SLKRNRWTLTMEDLVPGDCGNYTCKVCNSLGCIRHDTQVIVSDRVNHKPI
LMTGPLNLTLVVNSTGSMHCKYLSDLTSKKAWIFVPCHGMTNCSNNRSII
AEDKDQLDFVNVRMEQEGWYTCVESNSLGQSNSTAYLRVVRSLHVLEAGV
ASGSLHSTSFVYIFVFGGLIFIFMTTLFVFYAIRKMKHEKVLKQRIETVH
QWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQKQRTTVLQNGNEPAPFNE
YEFPLDSNWELPRSHLVLGATLGEGAFGRVVMAEVNNAIVAVKMVKEGHT
DDDIASLVREMEVMKIIGRHINIINLLGCCSQNGPLYVIVEYAPHGNLKD
FLYKNRPFGRDQDRDSSQPPPSPPAHVITEKDLIKFAHQIARGMDYLASR
RCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWM
APESLQEKFYDSKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSG
QRMEKPAKCSMNIYILMRQCWHFNADDRPPFTEIVEYMDKLLQTKEDYLD
VDIANLDTPPSTSDEEEDETDNLQKWCNY*
BS10445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| htl-PC | 729 | CG7223-PC | 1..729 | 1..729 | 3886 | 100 | Plus |
| htl-PA | 729 | CG7223-PA | 1..729 | 1..729 | 3886 | 100 | Plus |
| htl-PB | 729 | CG7223-PB | 1..729 | 1..729 | 3886 | 100 | Plus |
| btl-PB | 1052 | CG32134-PB | 356..1030 | 61..717 | 1673 | 53 | Plus |
| btl-PA | 1052 | CG32134-PA | 356..1030 | 61..717 | 1673 | 53 | Plus |
| btl-PB | 1052 | CG32134-PB | 116..344 | 75..287 | 183 | 27.7 | Plus |
