Clone Sequence Records
BS10446.3prime Sequence
813 bp (812 high quality bases) assembled on 2006-04-19
> BS10446.3prime
ATGGTCTAGAAAGCTTTTACACTCGCTTCGGTTTGCTGACCATTGTGTAG
TTGAGGCCATTATAGCTGCGATGATCGATGGCTGCCGCCTCGAGATTGCC
GCCTTTGTTGGCCGTTGCAGTTGTGATGGTGCTACTACCGCCGCTGATAT
TGCTATTGGAGATTCCTAGATTATTATTGTTCGTAGTGGTGCTAGCCTTT
CGCAGCACCCCGTAACCGCGATGACTGTCATCGGCTTTACGGAAGCTTTC
CGTATCGGGACTAGCGATCAATTCGTATTCATTGGGTGGCGGTGGACTGC
ATCGTATGCGATTACCGGGTGTGACATTCACAATGGTCTTATAGCCACTC
GATGTCTTATTGTTCGGCGATAGAAAGTCTAAACGATCGTAATTCGATTC
ACTAATGGATGTGGCGCTAGTGCAACCCTCACCGATATCGATGTCTATGA
TCTTGGGTGTATTTTGGCTGCCACAGGTGGATTTCGATACTGATCGCTGG
CGTACAAATTCTGAGGTATCGCAGAGTATGGGCATACGTTCACTGTGCCT
AACATCGCCCACGCCCCTTGTGCGCCACGCCTCTGTGATATTTTCGATGC
ACTCGTAATCCCGCTCCGGAGGCGGTGCTTTCGAGGCGCTCTCATTTCGC
AGCGGCAAGTCGGGCGGTAAATCGGCTGCTGTTTCCGGCAGGGATATCGA
TTCGCCTTCCAGGGGTTTCAGTATCACTGAACTGTTCACATCGGAATTGG
CGGATGGCGAAGATATCGTAGTTATGGCCACAGGTTCATATTTCACAATA
TTCCTGTATTTAT
BS10446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2079-PA | 1869 | l(1)G0331-RA | 1073..1869 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dok-RA | 3487 | CG2079-RA | 1448..2246 | 813..15 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7326767..7327565 | 813..15 | 3995 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 912..946 | 537..503 | 121 | 82.9 | Minus |
| Tirant | 8526 | Tirant TIRANT 8526bp | 1014..1048 | 537..503 | 121 | 82.9 | Minus |
| Tirant | 8526 | Tirant TIRANT 8526bp | 810..844 | 537..503 | 112 | 80 | Minus |
BS10446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:16 Download gff for
BS10446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2079-PA | 1073..1869 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:08 Download gff for
BS10446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2079-PA | 1073..1869 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:55 Download gff for
BS10446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 1448..2254 | 6..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:17 Download gff for
BS10446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 1448..2254 | 6..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:17 Download gff for
BS10446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7326767..7327573 | 6..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:55 Download gff for
BS10446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7220800..7221606 | 6..813 | 99 | | Minus |
BS10446.5prime Sequence
853 bp (850 high quality bases) assembled on 2006-04-19
> BS10446.5prime
GAAGTTATCAGTCGACATGGATGTTGAAATACCTGTTTTGGCTGGATATC
TTAATGTGCCGACCCAAACTGGATTTTCGCTAAATCGCATCTCGAAAAAG
AAAGCATGCAGTCGCTACTGTTTGCTATTCAAGGCCAGTCGGCATGGGAT
TGCCCGCCTGGAGATGTGCGAAAGCAAGGAGGACCGGAACCCCAAAATCT
TCACCCTCGAAAACTGTGTGAAGATCACTCAGGAGCCGCCTCCCGAACGC
CTCATTCACATTGTCAAGCGGCAGGCTACCCTAACACTGAGCACAAGTAG
CGAGGAGGAGCTCAAGGATTGGATCACCGCCCTGCAAACGGTGGCCTTCT
GTGACACCTCACCATCGGGGGGAATCGGGGCCATCGAGGAGGACAACGAC
CTCTACTGCAGCTCCTTTGATGGCTTGTTCATTATCACGTTGATTCCATC
CGAGGCCTCCATTCGTTGCTGCATTGAACCTAAGACATATATGCTCCAAA
TGACGCCCACTGAACTTCAGTTGAAATCGGAGGATTTGGGCGCCACAATC
GCCATGTGGCCATATCGTTTCATTAGGAAGTACGGCTATCGCGATGGCAA
GTTCACCTTTGAGGCGGGCAGAAAATGCACCACCGGCGAAGGCGTTTTCA
CCCTGGATCACACCAATCCACAGGAGGTATTCCGCTGCATGTCCGCCAAG
ATGAAGTCGATGAAGAAACTGATTAGCGGCGATAGTCTGAGCACCTTGGA
GTGCGGTGAGAATCAGTTTAGTGCGGCAGCTGGCATGGAGCCCGGTTCGC
GAAGCCCACTGCCACCATCACCGTCGAGTAATCCCCACGGTGGCGAGTTC
GAG
BS10446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2079-PA | 1869 | l(1)G0331-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dok-RA | 3487 | CG2079-RA | 376..1212 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7326097..7326531 | 419..853 | 2175 | 100 | Plus |
| X | 23542271 | X | 7325534..7325854 | 99..419 | 1605 | 100 | Plus |
| X | 23542271 | X | 7324589..7324672 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:47:15 has no hits.
BS10446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:17 Download gff for
BS10446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2079-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:09 Download gff for
BS10446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2079-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:05:01 Download gff for
BS10446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 370..1212 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:39:01 Download gff for
BS10446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 370..1212 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:39:01 Download gff for
BS10446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7324583..7324672 | 9..100 | 95 | -> | Plus |
| X | 7325536..7325853 | 101..418 | 100 | -> | Plus |
| X | 7326097..7326531 | 419..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:05:01 Download gff for
BS10446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7218616..7218705 | 9..100 | 95 | -> | Plus |
| arm_X | 7219569..7219886 | 101..418 | 100 | -> | Plus |
| arm_X | 7220130..7220564 | 419..853 | 100 | | Plus |
BS10446.complete Sequence
1901 bp assembled on 2007-11-30
GenBank Submission: FJ636666
> BS10446.complete
GAAGTTATCAGTCGACATGGATGTTGAAATACCTGTTTTGGCTGGATATC
TTAATGTGCCGACCCAAACTGGATTTTCGCTAAATCGCATCTCGAAAAAG
AAAGCATGCAGTCGCTACTGTTTGCTATTCAAGGCCAGTCGGCATGGGAT
TGCCCGCCTGGAGATGTGCGAAAGCAAGGAGGACCGGAACCCCAAAATCT
TCACCCTCGAAAACTGTGTGAAGATCACTCAGGAGCCGCCTCCCGAACGC
CTCATTCACATTGTCAAGCGGCAGGCTACCCTAACACTGAGCACAAGTAG
CGAGGAGGAGCTCAAGGATTGGATCACCGCCCTGCAAACGGTGGCCTTCT
GTGACACCTCACCATCGGGGGGAATCGGGGCCATCGAGGAGGACAACGAC
CTCTACTGCAGCTCCTTTGATGGCTTGTTCATTATCACGTTGATTCCATC
CGAGGCCTCCATTCGTTGCTGCATTGAACCTAAGACATATATGCTCCAAA
TGACGCCCACTGAACTTCAGTTGAAATCGGAGGATTTGGGCGCCACAATC
GCCATGTGGCCATATCGTTTCATTAGGAAGTACGGCTATCGCGATGGCAA
GTTCACCTTTGAGGCGGGCAGAAAATGCACCACCGGCGAAGGCGTTTTCA
CCCTGGATCACACCAATCCACAGGAGGTATTCCGCTGCATGTCCGCCAAG
ATGAAGTCGATGAAGAAACTGATTAGCGGCGATAGTCTGAGCACCTTGGA
GTGCGGTGAGAATCAGTTTAGTGCGGCAGCTGGCATGGAGCCCGGTTCGC
GAAGCCCACTGCCACCATCACCGTCGAGTAATCCCCACGGTGGCGAGTTC
GAGATCAACTCAACGCAAAGCTGCATATCCCTGAGGGGCTTCATTAGCTC
TAACGATTCTCTTAATAACTTCTCGGCGGGTGGAGGTGGAGCAAGTGGCG
CCACAGCAACGGGTGGAGGCGTTTTAGGAAGTACCGGAGGAATCACGCTA
TCCGTGCCCGCAAATAGCAATAGCAACAGCAGCAGCAGCAAACACATTCC
CAACAAACCGCCACGCAAAAGCCCGACAACCCATTGTGATAAATACAGGA
ATATTGTGAAATATGAACCTGTGGCCATAACTACGATATCTTCGCCATCC
GCCAATTCCGATGTGAACAGTTCAGTGATACTGAAACCCCTGGAAGGCGA
ATCGATATCCCTGCCGGAAACAGCAGCCGATTTACCGCCCGACTTGCCGC
TGCGAAATGAGAGCGCCTCGAAAGCACCGCCTCCGGAGCGGGATTACGAG
TGCATCGAAAATATCACAGAGGCGTGGCGCACAAGGGGCGTGGGCGATGT
TAGGCACAGTGAACGTATGCCCATACTCTGCGATACCTCAGAATTTGTAC
GCCAGCGATCAGTATCGAAATCCACCTGTGGCAGCCAAAATACACCCAAG
ATCATAGACATCGATATCGGTGAGGGTTGCACTAGCGCCACATCCATTAG
TGAATCGAATTACGATCGTTTAGACTTTCTATCGCCGAACAATAAGACAT
CGAGTGGCTATAAGACCATTGTGAATGTCACACCCGGTAATCGCATACGA
TGCAGTCCACCGCCACCCAATGAATACGAATTGATCGCTAGTCCCGATAC
GGAAAGCTTCCGTAAAGCCGATGACAGTCATCGCGGTTACGGGGTGCTGC
GAAAGGCTAGCACCACTACGAACAATAATAATCTAGGAATCTCCAATAGC
AATATCAGCGGCGGTAGTAGCACCATCACAACTGCAACGGCCAACAAAGG
CGGCAATCTCGAGGCGGCAGCCATCGATCATCGCAGCTATAATGGCCTCA
ACTACACAATGGTCAGCAAACCGAAGCGAGTGTAAAAGCTTTCTAGACCA
T
BS10446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dok-RA | 1869 | CG2079-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dok-RA | 3487 | CG2079-RA | 376..2246 | 17..1887 | 9355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7326097..7327565 | 419..1887 | 7345 | 100 | Plus |
| X | 23542271 | X | 7325534..7325854 | 99..419 | 1605 | 100 | Plus |
| X | 23542271 | X | 7324589..7324672 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6890 | 950..1072 | 141 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2486..2622 | 1014..1149 | 133 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2620..2863 | 1016..1263 | 129 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2400 | 1013..1080 | 125 | 70 | Plus |
| Tirant | 8526 | Tirant TIRANT 8526bp | 912..946 | 1365..1399 | 121 | 82.9 | Plus |
| Tirant | 8526 | Tirant TIRANT 8526bp | 1014..1048 | 1365..1399 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2433 | 940..1057 | 120 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2424 | 1016..1080 | 118 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6797 | 1016..1072 | 113 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6818 | 1016..1072 | 113 | 70.7 | Plus |
BS10446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:29 Download gff for
BS10446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 1..1869 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:03 Download gff for
BS10446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 366..2250 | 9..1896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:52 Download gff for
BS10446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 376..2242 | 17..1883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:15 Download gff for
BS10446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 372..2238 | 17..1883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:17 Download gff for
BS10446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 376..2242 | 17..1883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:17 Download gff for
BS10446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7324589..7324672 | 17..100 | 100 | -> | Plus |
| X | 7325536..7325853 | 101..418 | 100 | -> | Plus |
| X | 7326097..7327561 | 419..1883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:52 Download gff for
BS10446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7218622..7218705 | 17..100 | 100 | -> | Plus |
| arm_X | 7219569..7219886 | 101..418 | 100 | -> | Plus |
| arm_X | 7220130..7221594 | 419..1883 | 100 | | Plus |
BS10446.pep Sequence
Translation from 16 to 1884
> BS10446.pep
MDVEIPVLAGYLNVPTQTGFSLNRISKKKACSRYCLLFKASRHGIARLEM
CESKEDRNPKIFTLENCVKITQEPPPERLIHIVKRQATLTLSTSSEEELK
DWITALQTVAFCDTSPSGGIGAIEEDNDLYCSSFDGLFIITLIPSEASIR
CCIEPKTYMLQMTPTELQLKSEDLGATIAMWPYRFIRKYGYRDGKFTFEA
GRKCTTGEGVFTLDHTNPQEVFRCMSAKMKSMKKLISGDSLSTLECGENQ
FSAAAGMEPGSRSPLPPSPSSNPHGGEFEINSTQSCISLRGFISSNDSLN
NFSAGGGGASGATATGGGVLGSTGGITLSVPANSNSNSSSSKHIPNKPPR
KSPTTHCDKYRNIVKYEPVAITTISSPSANSDVNSSVILKPLEGESISLP
ETAADLPPDLPLRNESASKAPPPERDYECIENITEAWRTRGVGDVRHSER
MPILCDTSEFVRQRSVSKSTCGSQNTPKIIDIDIGEGCTSATSISESNYD
RLDFLSPNNKTSSGYKTIVNVTPGNRIRCSPPPPNEYELIASPDTESFRK
ADDSHRGYGVLRKASTTTNNNNLGISNSNISGGSSTITTATANKGGNLEA
AAIDHRSYNGLNYTMVSKPKRV*
BS10446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dok-PA | 622 | CG2079-PA | 1..622 | 1..622 | 3252 | 100 | Plus |
