Clone BS10447 Report

Search the DGRC for BS10447

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG31643-RA
Protein status:BS10447.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10447.3prime Sequence

963 bp (839 high quality bases) assembled on 2006-04-19

> BS10447.3prime
ATGGTCTAGAAAGCTTCTAATGTGAAATTTGTAACAAGCATTTAAGGTAG
TTGGCCTTGGCTGTTGATGACGCCATATACTTGGAGTTCCAGTCGTGCTC
GTTGATCTGCATCACTTTGTAGCCCATCATCTCTAGATGTCGCATCTTCA
AAGATTCAGGACCCCGCAATGCAGTCAGATCGTTTTCACAAAAAGAGTCG
AGCTTGAGCAGTAGTATTGCCACTTTGGTTATGCGATCCAACATGGTTGC
CTCCACGGGAGGTGCTGGGATGGGATTTTTATCCCGATCGAAATGTATCA
CAAAGTCTATTTGGTAGCCGTAGGGTGTAGTGTGGTTGCAGCGGAAATGC
TTGTCATTTTGAAGAAGCTGATGCAGCAGCTGCTTCACCTCTGTTGTGGA
CTCACTGGGTATTAAGGATTTTTTGCTGATCTGCGCCTCGATGTAGTTTT
GTTGAAACCAGGGCACATTCGCCTCGGGAAAGTCCAGGCATACTGTGCGA
TTCAGTTGCATAACCAGGTTAAGGACCCTCTCCGGATACGTTGCTTTTGA
GTAGCATACTTGTATCTCATCCTCGATTCGCTGAATGAATTTCACGCAGA
ATACTTGATTGATTAGCTGCTCTGGTATTGATTTGTAAAAGCACAGTGCT
AGACAAGCCTGGACAACCGATAAACCGCTCATCTGGTCAAAATCTCTTAG
CAGTACTTCGGAGGCGTGGTTTAGAGCCTCCACGGACGCTGGCATGTAGC
CCAAATTATACGAGCAGGTCAACACTTTCTCCACTGTGTCGCCGGAAACG
TGATCATGCTGTTCGGAAATGTAGGCGAACATGGACTCCAGGAGCTCGGG
AACAAGAAATTCGAAGCGTTGAAGTTGTAGGCCATGTCCCGAAACACCCG
AGAAATGAGATCGTTGCAGTGCAGATTTTTGTACTGCGCCAGGGGCCTGG
TTGTAAACCACCG

BS10447.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-PA 2700 CG31643-RA 1862..2700 855..17 4195 100 Minus
CG31643-PA 2700 CG31643-RA 1772..1862 944..854 405 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-RB 2842 CG31643-RB 1840..2786 963..17 4660 99.6 Minus
CG31643-RA 2938 CG31643-RA 1840..2786 963..17 4660 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6040337..6040613 697..421 1385 100 Minus
2L 23513712 2L 6040020..6040287 963..696 1215 98.5 Minus
2L 23513712 2L 6040924..6041131 224..17 1040 100 Minus
2L 23513712 2L 6040669..6040864 420..225 980 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:35:19 has no hits.

BS10447.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:18 Download gff for BS10447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-PA 1754..2700 17..963 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:11 Download gff for BS10447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-PA 1754..2700 17..963 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:41 Download gff for BS10447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1796..2747 9..963 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:37 Download gff for BS10447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1840..2791 9..963 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:37 Download gff for BS10447.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6040669..6040864 225..420 100 -> Minus
2L 6040924..6041136 9..224 98   Minus
2L 6040020..6040287 696..963 98 -> Minus
2L 6040339..6040613 421..695 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:41 Download gff for BS10447.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6040020..6040287 696..963 98 -> Minus
arm_2L 6040339..6040613 421..695 100 -> Minus
arm_2L 6040669..6040864 225..420 100 -> Minus
arm_2L 6040924..6041136 9..224 98   Minus

BS10447.5prime Sequence

896 bp (774 high quality bases) assembled on 2006-04-19

> BS10447.5prime
GAAGTTATCAGTCGACATGTATCTGAACCACCTGCCGCGGACACAATGGA
AGTACCTACAATACCTTCTGCGAGTGCGTCAGCTTCAGCTCCTGCGACGG
CACGTTAACATTGGCGCAAAGCCGCCCATCCAAACAGCTGCCTTGCTGCC
GGCATTGGGCCAAAAACTGAGGAAGCACTCGCAGCTGGTGAACGGAGATC
TCCAAGACAAGTTTGGCGTGCCACGGGAACAGGATGCTCTTCTAACCCGA
CTGGAGGAGGCCAAGACGGGTAACCAGATTTTAGATGTGTTGGAGAGCTG
TGACGGCCTGCAGAGCTCCCATGTGGTGATGGGAATCTCACTGCTGTGGA
ACATCTATCACGACGCGGAGCAGGCAAGTAAAGATGCCATCACGGATCGC
GTGCTGCTTAACGTGCTCCCAAAGTTGGCCCCTTATGTACACCAACTGGA
GATCGATGATCTCAGTAGATGCTACCTGTACCTGCGCAAAATGCATATAC
CAAACTCCGAGGCAGTCGTGGAGGCCGTGCTGACGAGATCTCTTCAATTA
ATCGAGTCACAAGTTGATGACGAAGTCATTCCCTTGACCTCCTTGTCTCG
CCTCTCGGTGGGCATCAACTTGGAACGCGACTTCTTCACTCCGCTTGTGT
GTAGGAACTTTATTCCGCACCTGGAACATCACATCAATTGGTGTCGCAGC
GCAGAGCAGGTTCGCCTTCTGTCCACGTGCCTCTTTCAGCTACACTTTCT
CATTGATGAGGAGCTGTTTACGCGCTTNCAGTTGCGCTTGACTGAAATGA
TGCAAAGCGGCGTCCTCAGCAGCGAAACCCCTAAGGCTCTTCTGAAGGTG
ATCCACATGCTGAATATTCCAGTGTGGTCGCAGACCCACACCCAAT

BS10447.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-PA 2700 CG31643-RA 1..880 17..896 4356 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-RB 2842 CG31643-RB 86..966 16..896 4379 99.8 Plus
CG31643-RA 2938 CG31643-RA 86..966 16..896 4379 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6038202..6039082 16..896 4379 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 14:55:46 has no hits.

BS10447.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:20 Download gff for BS10447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-PA 1..880 17..896 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:12 Download gff for BS10447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-PA 1..880 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:35 Download gff for BS10447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 31..922 3..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:29 Download gff for BS10447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 75..966 3..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:29 Download gff for BS10447.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6038191..6039082 3..896 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:35 Download gff for BS10447.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6038191..6039082 3..896 99   Plus

BS10447.complete Sequence

2732 bp assembled on 2007-11-30

GenBank Submission: FJ636667

> BS10447.complete
GAAGTTATCAGTCGACATGTATCTGAACCACCTGCCGCGGACACAATGGA
AGTACCTACAATACCTTCTGCGAGTGCGTCAGCTTCAGCTCCTGCGACGG
CACGTTAACATTGGCGCAAAGCCGCCCATCCAAACAGCTGCCTTGCTGCC
GGCATTGGGCCAAAAACTGAGGAAGCACTCGCAGCTGGTGAACGGAGATC
TCCAAGACAAGTTTGGCGTGCCACGGGAACAGGATGCTCTTCTAACCCGA
CTGGAGGAGGCCAAGACGGGTAACCAGATTTTAGATGTGTTGGAGAGCTG
TGACGGCCTGCAGAGCTCCCATGTGGTGATGGGAATCTCACTGCTGTGGA
ACATCTATCACGACGCGGAGCAGGCAAGTAAAGATGCCATCACGGATCGC
GTGCTGCTTAACGTGCTCCCAAAGTTGGCCCCTTATGTACACCAACTGGA
GATCGATGATCTCAGTAGATGCTACCTGTACCTGCGCAAAATGCATATAC
CAAACTCCGAGGCAGTCGTGGAGGCCGTGCTGACGAGATCTCTTCAATTA
ATCGAGTCACAAGTTGATGACGAAGTCATTCCCTTGACCTCCTTGTCTCG
CCTCTCGGTGGGCATCAACTTGGAACGCGACTTCTTCACTCCGCTTGTGT
GTAGGAACTTTATTCCGCACCTGGAACATCACATCAATTGGTGTCGCAGC
GCAGAGCAGGTTCGCCTTCTGTCCACGTGCCTCTTTCAGCTACACTTTCT
CATTGATGAGGAGCTGTTTACGCGCTTCAAGTTGCGCTTGACTGAAATGA
TGCAAAGCGGCGTCCTCAGCAGCGAAACCCCTAAGGCTCTTCTGAAGGTG
ATCCACATGCTGAATATTCCAGTGTGGTCGCAGACCCACACCCAATTGAT
TCGGGAGGTCATGCTGGTCTTGCGACCTTGCATACACCAGATGGAGTCTG
CAGATCTAAAGAGCATTTGTCGCACATTTTTGCATCATCAAGAACCCGCC
GCACTGATAGAGCCGCTCAAGAAAGCCCTTGAAAAGTTACTACAGGAAGA
AGGCACTGCTGACGCCCTGTTTTGTGCAGTTCCCTTTGCAACGCCACTGC
AGAGAGACCAGTATCTGCATCAGTTTAAGGAACTGCTCTACTCCGAAGAG
GCCTGGCAGCAACCCAATGCGAGCGGACATTTATTCAGCGTTCTGCGTGC
ACTAAAAGTCTCCGACATTGAATTCTGCAACACATACTGGTCAGGAGTTG
TAAAAGAGCTGGAGTCCTGTCCGGAAAAGCATTTGCACCTACGGTTCCTG
AGACACTGTCAACGCTATATGAACTTTAATAACAATCTGGGAGGAACCTA
CCGTCACTTAGAACTGGAACGAAAGCTAAGTCGCATGTGCATGAATGCTA
TTGAGCATGACATAGCGGGAAGGCTGCCAGCGAAGTTCGCACGACTTGCA
TCCTTTGTGCTAGCTTACGGGCAGACTCCGTTGGCCTGGAAGAAATTTCC
CAACTTTTTGTTAAGCAAAATGCTCGCAATGGCGCCCCAGCTTGGCATTC
AGGATTGCTTTCTCCTCAGTCGCGGCATGCAAATAGCCAGCGAACTAAGG
TTTCGCCAGCATCTTCCGGCATTAGCTGGCATGCAACTGTCCACAATGGA
CAGCATTCTCATCGGTTGTGCGGAGAGGCACTTGAGAGATGCCGAAAAGG
ACCCTCTAAATGCCAGCGAATTGAGCATGATTGTCAGAACACTCAGTCAT
CGCAAGAAGCTAAAGAATACGGTGGTTTACAACCAGGCCCTGGCGCAGTA
CAAAAATCTGCACTGCAACGATCTCAATTCTCGGGTGGTTCGGGACATGG
CCTACAACTTCAACGCTTCGAATTTCTTTGTTCCCGAGCTCCTGGAGTCC
ATGTTCGCCTACATTTCCGAACAGCATGATCACGTTTCCGGCGACACAGT
GGAGAAAGTGTTGACCTGCTCGTATAATTTGGGCTACATGCCAGCGTCCG
TGGAGGCTCTAAACCACGCCTCCGAAGTACTGCTAAGAGATTTTGACCAG
ATGAGCGGTTTATCGGTTGTCCAGGCTTGTCTAGCACTGTGCTTTTACAA
ATCAATACCAGAGCAGCTAATCAATCAAGTATTCTGCGTGAAATTCATTC
AGCGAATCGAGGATGAGATACAAGTATGCTACTCAAAAGCAACGTATCCG
GAGAGGGTCCTTAACCTGGTTATGCAACTGAATCGCACAGTATGCCTGGA
CTTTCCCGAGGCGAATGTGCCCTGGTTTCAACAAAACTACATCGAGGCGC
AGATCAGCAAAAAATCCTTAATACCCAGTGAGTCCACAACAGAGGTGAAG
CAGCTGCTGCATCAGCTTCTTCAAAATGACAAGCATTTCCGCTGCAACCA
CACTACACCCTACGGCTACCAAATAGACTTTGTGATACATTTCGATCGGG
ATAAAAATCCCATCCCAGCACCTCCCGTGGAGGCAACCATGTTGGATCGC
ATAACCAAAGTGGCAATACTACTGCTCAAGCTCGACTCTTTTTGTGAAAA
CGATCTGACTGCATTGCGGGGTCCTGAATCTTTGAAGATGCGACATCTAG
AGATGATGGGCTACAAAGTGATGCAGATCAACGAGCACGACTGGAACTCC
AAGTATATGGCGTCATCAACAGCCAAGGCCAACTACCTTAAATGCTTGTT
ACAAATTTCACATTAGAAGCTTTCTAGACCAT

BS10447.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-RB 2700 CG31643-PB 1..2700 17..2716 13500 100 Plus
CG31643-RA 2700 CG31643-PA 1..2700 17..2716 13500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-RB 2842 CG31643-RB 86..2786 16..2716 13505 100 Plus
CG31643-RA 2938 CG31643-RA 86..2786 16..2716 13505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6038202..6039943 16..1757 8710 100 Plus
2L 23513712 2L 6040008..6040287 1758..2037 1400 100 Plus
2L 23513712 2L 6040337..6040613 2036..2312 1385 100 Plus
2L 23513712 2L 6040924..6041131 2509..2716 1040 100 Plus
2L 23513712 2L 6040669..6040864 2313..2508 980 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:35:49 has no hits.

BS10447.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:31 Download gff for BS10447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2700 17..2716 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:05 Download gff for BS10447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 31..2747 3..2724 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:56 Download gff for BS10447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 43..2742 17..2716 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:22 Download gff for BS10447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 43..2742 17..2716 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:10 Download gff for BS10447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 87..2786 17..2716 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:10 Download gff for BS10447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6038203..6039943 17..1757 100 -> Plus
2L 6040008..6040287 1758..2037 100 -> Plus
2L 6040339..6040613 2038..2312 100 -> Plus
2L 6040669..6040864 2313..2508 100 -> Plus
2L 6040924..6041131 2509..2716 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:56 Download gff for BS10447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6038203..6039943 17..1757 100 -> Plus
arm_2L 6040008..6040287 1758..2037 100 -> Plus
arm_2L 6040339..6040613 2038..2312 100 -> Plus
arm_2L 6040669..6040864 2313..2508 100 -> Plus
arm_2L 6040924..6041131 2509..2716 100   Plus

BS10447.pep Sequence

Translation from 16 to 2715

> BS10447.pep
MYLNHLPRTQWKYLQYLLRVRQLQLLRRHVNIGAKPPIQTAALLPALGQK
LRKHSQLVNGDLQDKFGVPREQDALLTRLEEAKTGNQILDVLESCDGLQS
SHVVMGISLLWNIYHDAEQASKDAITDRVLLNVLPKLAPYVHQLEIDDLS
RCYLYLRKMHIPNSEAVVEAVLTRSLQLIESQVDDEVIPLTSLSRLSVGI
NLERDFFTPLVCRNFIPHLEHHINWCRSAEQVRLLSTCLFQLHFLIDEEL
FTRFKLRLTEMMQSGVLSSETPKALLKVIHMLNIPVWSQTHTQLIREVML
VLRPCIHQMESADLKSICRTFLHHQEPAALIEPLKKALEKLLQEEGTADA
LFCAVPFATPLQRDQYLHQFKELLYSEEAWQQPNASGHLFSVLRALKVSD
IEFCNTYWSGVVKELESCPEKHLHLRFLRHCQRYMNFNNNLGGTYRHLEL
ERKLSRMCMNAIEHDIAGRLPAKFARLASFVLAYGQTPLAWKKFPNFLLS
KMLAMAPQLGIQDCFLLSRGMQIASELRFRQHLPALAGMQLSTMDSILIG
CAERHLRDAEKDPLNASELSMIVRTLSHRKKLKNTVVYNQALAQYKNLHC
NDLNSRVVRDMAYNFNASNFFVPELLESMFAYISEQHDHVSGDTVEKVLT
CSYNLGYMPASVEALNHASEVLLRDFDQMSGLSVVQACLALCFYKSIPEQ
LINQVFCVKFIQRIEDEIQVCYSKATYPERVLNLVMQLNRTVCLDFPEAN
VPWFQQNYIEAQISKKSLIPSESTTEVKQLLHQLLQNDKHFRCNHTTPYG
YQIDFVIHFDRDKNPIPAPPVEATMLDRITKVAILLLKLDSFCENDLTAL
RGPESLKMRHLEMMGYKVMQINEHDWNSKYMASSTAKANYLKCLLQISH*

BS10447.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-PB 899 CG31643-PB 1..899 1..899 4684 100 Plus
CG31643-PA 899 CG31643-PA 1..899 1..899 4684 100 Plus