Clone Sequence Records
BS10447.3prime Sequence
963 bp (839 high quality bases) assembled on 2006-04-19
> BS10447.3prime
ATGGTCTAGAAAGCTTCTAATGTGAAATTTGTAACAAGCATTTAAGGTAG
TTGGCCTTGGCTGTTGATGACGCCATATACTTGGAGTTCCAGTCGTGCTC
GTTGATCTGCATCACTTTGTAGCCCATCATCTCTAGATGTCGCATCTTCA
AAGATTCAGGACCCCGCAATGCAGTCAGATCGTTTTCACAAAAAGAGTCG
AGCTTGAGCAGTAGTATTGCCACTTTGGTTATGCGATCCAACATGGTTGC
CTCCACGGGAGGTGCTGGGATGGGATTTTTATCCCGATCGAAATGTATCA
CAAAGTCTATTTGGTAGCCGTAGGGTGTAGTGTGGTTGCAGCGGAAATGC
TTGTCATTTTGAAGAAGCTGATGCAGCAGCTGCTTCACCTCTGTTGTGGA
CTCACTGGGTATTAAGGATTTTTTGCTGATCTGCGCCTCGATGTAGTTTT
GTTGAAACCAGGGCACATTCGCCTCGGGAAAGTCCAGGCATACTGTGCGA
TTCAGTTGCATAACCAGGTTAAGGACCCTCTCCGGATACGTTGCTTTTGA
GTAGCATACTTGTATCTCATCCTCGATTCGCTGAATGAATTTCACGCAGA
ATACTTGATTGATTAGCTGCTCTGGTATTGATTTGTAAAAGCACAGTGCT
AGACAAGCCTGGACAACCGATAAACCGCTCATCTGGTCAAAATCTCTTAG
CAGTACTTCGGAGGCGTGGTTTAGAGCCTCCACGGACGCTGGCATGTAGC
CCAAATTATACGAGCAGGTCAACACTTTCTCCACTGTGTCGCCGGAAACG
TGATCATGCTGTTCGGAAATGTAGGCGAACATGGACTCCAGGAGCTCGGG
AACAAGAAATTCGAAGCGTTGAAGTTGTAGGCCATGTCCCGAAACACCCG
AGAAATGAGATCGTTGCAGTGCAGATTTTTGTACTGCGCCAGGGGCCTGG
TTGTAAACCACCG
BS10447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-PA | 2700 | CG31643-RA | 1862..2700 | 855..17 | 4195 | 100 | Minus |
CG31643-PA | 2700 | CG31643-RA | 1772..1862 | 944..854 | 405 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2842 | CG31643-RB | 1840..2786 | 963..17 | 4660 | 99.6 | Minus |
CG31643-RA | 2938 | CG31643-RA | 1840..2786 | 963..17 | 4660 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6040337..6040613 | 697..421 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 6040020..6040287 | 963..696 | 1215 | 98.5 | Minus |
2L | 23513712 | 2L | 6040924..6041131 | 224..17 | 1040 | 100 | Minus |
2L | 23513712 | 2L | 6040669..6040864 | 420..225 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:35:19 has no hits.
BS10447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:18 Download gff for
BS10447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1754..2700 | 17..963 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:11 Download gff for
BS10447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1754..2700 | 17..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:41 Download gff for
BS10447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 1796..2747 | 9..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:37 Download gff for
BS10447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 1840..2791 | 9..963 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:37 Download gff for
BS10447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6040669..6040864 | 225..420 | 100 | -> | Minus |
2L | 6040924..6041136 | 9..224 | 98 | | Minus |
2L | 6040020..6040287 | 696..963 | 98 | -> | Minus |
2L | 6040339..6040613 | 421..695 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:41 Download gff for
BS10447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6040020..6040287 | 696..963 | 98 | -> | Minus |
arm_2L | 6040339..6040613 | 421..695 | 100 | -> | Minus |
arm_2L | 6040669..6040864 | 225..420 | 100 | -> | Minus |
arm_2L | 6040924..6041136 | 9..224 | 98 | | Minus |
BS10447.5prime Sequence
896 bp (774 high quality bases) assembled on 2006-04-19
> BS10447.5prime
GAAGTTATCAGTCGACATGTATCTGAACCACCTGCCGCGGACACAATGGA
AGTACCTACAATACCTTCTGCGAGTGCGTCAGCTTCAGCTCCTGCGACGG
CACGTTAACATTGGCGCAAAGCCGCCCATCCAAACAGCTGCCTTGCTGCC
GGCATTGGGCCAAAAACTGAGGAAGCACTCGCAGCTGGTGAACGGAGATC
TCCAAGACAAGTTTGGCGTGCCACGGGAACAGGATGCTCTTCTAACCCGA
CTGGAGGAGGCCAAGACGGGTAACCAGATTTTAGATGTGTTGGAGAGCTG
TGACGGCCTGCAGAGCTCCCATGTGGTGATGGGAATCTCACTGCTGTGGA
ACATCTATCACGACGCGGAGCAGGCAAGTAAAGATGCCATCACGGATCGC
GTGCTGCTTAACGTGCTCCCAAAGTTGGCCCCTTATGTACACCAACTGGA
GATCGATGATCTCAGTAGATGCTACCTGTACCTGCGCAAAATGCATATAC
CAAACTCCGAGGCAGTCGTGGAGGCCGTGCTGACGAGATCTCTTCAATTA
ATCGAGTCACAAGTTGATGACGAAGTCATTCCCTTGACCTCCTTGTCTCG
CCTCTCGGTGGGCATCAACTTGGAACGCGACTTCTTCACTCCGCTTGTGT
GTAGGAACTTTATTCCGCACCTGGAACATCACATCAATTGGTGTCGCAGC
GCAGAGCAGGTTCGCCTTCTGTCCACGTGCCTCTTTCAGCTACACTTTCT
CATTGATGAGGAGCTGTTTACGCGCTTNCAGTTGCGCTTGACTGAAATGA
TGCAAAGCGGCGTCCTCAGCAGCGAAACCCCTAAGGCTCTTCTGAAGGTG
ATCCACATGCTGAATATTCCAGTGTGGTCGCAGACCCACACCCAAT
BS10447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-PA | 2700 | CG31643-RA | 1..880 | 17..896 | 4356 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2842 | CG31643-RB | 86..966 | 16..896 | 4379 | 99.8 | Plus |
CG31643-RA | 2938 | CG31643-RA | 86..966 | 16..896 | 4379 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6038202..6039082 | 16..896 | 4379 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:55:46 has no hits.
BS10447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:20 Download gff for
BS10447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:12 Download gff for
BS10447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:35 Download gff for
BS10447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 31..922 | 3..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:29 Download gff for
BS10447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 75..966 | 3..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:29 Download gff for
BS10447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6038191..6039082 | 3..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:35 Download gff for
BS10447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6038191..6039082 | 3..896 | 99 | | Plus |
BS10447.complete Sequence
2732 bp assembled on 2007-11-30
GenBank Submission: FJ636667
> BS10447.complete
GAAGTTATCAGTCGACATGTATCTGAACCACCTGCCGCGGACACAATGGA
AGTACCTACAATACCTTCTGCGAGTGCGTCAGCTTCAGCTCCTGCGACGG
CACGTTAACATTGGCGCAAAGCCGCCCATCCAAACAGCTGCCTTGCTGCC
GGCATTGGGCCAAAAACTGAGGAAGCACTCGCAGCTGGTGAACGGAGATC
TCCAAGACAAGTTTGGCGTGCCACGGGAACAGGATGCTCTTCTAACCCGA
CTGGAGGAGGCCAAGACGGGTAACCAGATTTTAGATGTGTTGGAGAGCTG
TGACGGCCTGCAGAGCTCCCATGTGGTGATGGGAATCTCACTGCTGTGGA
ACATCTATCACGACGCGGAGCAGGCAAGTAAAGATGCCATCACGGATCGC
GTGCTGCTTAACGTGCTCCCAAAGTTGGCCCCTTATGTACACCAACTGGA
GATCGATGATCTCAGTAGATGCTACCTGTACCTGCGCAAAATGCATATAC
CAAACTCCGAGGCAGTCGTGGAGGCCGTGCTGACGAGATCTCTTCAATTA
ATCGAGTCACAAGTTGATGACGAAGTCATTCCCTTGACCTCCTTGTCTCG
CCTCTCGGTGGGCATCAACTTGGAACGCGACTTCTTCACTCCGCTTGTGT
GTAGGAACTTTATTCCGCACCTGGAACATCACATCAATTGGTGTCGCAGC
GCAGAGCAGGTTCGCCTTCTGTCCACGTGCCTCTTTCAGCTACACTTTCT
CATTGATGAGGAGCTGTTTACGCGCTTCAAGTTGCGCTTGACTGAAATGA
TGCAAAGCGGCGTCCTCAGCAGCGAAACCCCTAAGGCTCTTCTGAAGGTG
ATCCACATGCTGAATATTCCAGTGTGGTCGCAGACCCACACCCAATTGAT
TCGGGAGGTCATGCTGGTCTTGCGACCTTGCATACACCAGATGGAGTCTG
CAGATCTAAAGAGCATTTGTCGCACATTTTTGCATCATCAAGAACCCGCC
GCACTGATAGAGCCGCTCAAGAAAGCCCTTGAAAAGTTACTACAGGAAGA
AGGCACTGCTGACGCCCTGTTTTGTGCAGTTCCCTTTGCAACGCCACTGC
AGAGAGACCAGTATCTGCATCAGTTTAAGGAACTGCTCTACTCCGAAGAG
GCCTGGCAGCAACCCAATGCGAGCGGACATTTATTCAGCGTTCTGCGTGC
ACTAAAAGTCTCCGACATTGAATTCTGCAACACATACTGGTCAGGAGTTG
TAAAAGAGCTGGAGTCCTGTCCGGAAAAGCATTTGCACCTACGGTTCCTG
AGACACTGTCAACGCTATATGAACTTTAATAACAATCTGGGAGGAACCTA
CCGTCACTTAGAACTGGAACGAAAGCTAAGTCGCATGTGCATGAATGCTA
TTGAGCATGACATAGCGGGAAGGCTGCCAGCGAAGTTCGCACGACTTGCA
TCCTTTGTGCTAGCTTACGGGCAGACTCCGTTGGCCTGGAAGAAATTTCC
CAACTTTTTGTTAAGCAAAATGCTCGCAATGGCGCCCCAGCTTGGCATTC
AGGATTGCTTTCTCCTCAGTCGCGGCATGCAAATAGCCAGCGAACTAAGG
TTTCGCCAGCATCTTCCGGCATTAGCTGGCATGCAACTGTCCACAATGGA
CAGCATTCTCATCGGTTGTGCGGAGAGGCACTTGAGAGATGCCGAAAAGG
ACCCTCTAAATGCCAGCGAATTGAGCATGATTGTCAGAACACTCAGTCAT
CGCAAGAAGCTAAAGAATACGGTGGTTTACAACCAGGCCCTGGCGCAGTA
CAAAAATCTGCACTGCAACGATCTCAATTCTCGGGTGGTTCGGGACATGG
CCTACAACTTCAACGCTTCGAATTTCTTTGTTCCCGAGCTCCTGGAGTCC
ATGTTCGCCTACATTTCCGAACAGCATGATCACGTTTCCGGCGACACAGT
GGAGAAAGTGTTGACCTGCTCGTATAATTTGGGCTACATGCCAGCGTCCG
TGGAGGCTCTAAACCACGCCTCCGAAGTACTGCTAAGAGATTTTGACCAG
ATGAGCGGTTTATCGGTTGTCCAGGCTTGTCTAGCACTGTGCTTTTACAA
ATCAATACCAGAGCAGCTAATCAATCAAGTATTCTGCGTGAAATTCATTC
AGCGAATCGAGGATGAGATACAAGTATGCTACTCAAAAGCAACGTATCCG
GAGAGGGTCCTTAACCTGGTTATGCAACTGAATCGCACAGTATGCCTGGA
CTTTCCCGAGGCGAATGTGCCCTGGTTTCAACAAAACTACATCGAGGCGC
AGATCAGCAAAAAATCCTTAATACCCAGTGAGTCCACAACAGAGGTGAAG
CAGCTGCTGCATCAGCTTCTTCAAAATGACAAGCATTTCCGCTGCAACCA
CACTACACCCTACGGCTACCAAATAGACTTTGTGATACATTTCGATCGGG
ATAAAAATCCCATCCCAGCACCTCCCGTGGAGGCAACCATGTTGGATCGC
ATAACCAAAGTGGCAATACTACTGCTCAAGCTCGACTCTTTTTGTGAAAA
CGATCTGACTGCATTGCGGGGTCCTGAATCTTTGAAGATGCGACATCTAG
AGATGATGGGCTACAAAGTGATGCAGATCAACGAGCACGACTGGAACTCC
AAGTATATGGCGTCATCAACAGCCAAGGCCAACTACCTTAAATGCTTGTT
ACAAATTTCACATTAGAAGCTTTCTAGACCAT
BS10447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2700 | CG31643-PB | 1..2700 | 17..2716 | 13500 | 100 | Plus |
CG31643-RA | 2700 | CG31643-PA | 1..2700 | 17..2716 | 13500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-RB | 2842 | CG31643-RB | 86..2786 | 16..2716 | 13505 | 100 | Plus |
CG31643-RA | 2938 | CG31643-RA | 86..2786 | 16..2716 | 13505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6038202..6039943 | 16..1757 | 8710 | 100 | Plus |
2L | 23513712 | 2L | 6040008..6040287 | 1758..2037 | 1400 | 100 | Plus |
2L | 23513712 | 2L | 6040337..6040613 | 2036..2312 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 6040924..6041131 | 2509..2716 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 6040669..6040864 | 2313..2508 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:35:49 has no hits.
BS10447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:31 Download gff for
BS10447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 1..2700 | 17..2716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:05 Download gff for
BS10447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 31..2747 | 3..2724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:56 Download gff for
BS10447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 43..2742 | 17..2716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:22 Download gff for
BS10447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 43..2742 | 17..2716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:10 Download gff for
BS10447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31643-RA | 87..2786 | 17..2716 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:10 Download gff for
BS10447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6038203..6039943 | 17..1757 | 100 | -> | Plus |
2L | 6040008..6040287 | 1758..2037 | 100 | -> | Plus |
2L | 6040339..6040613 | 2038..2312 | 100 | -> | Plus |
2L | 6040669..6040864 | 2313..2508 | 100 | -> | Plus |
2L | 6040924..6041131 | 2509..2716 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:56 Download gff for
BS10447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6038203..6039943 | 17..1757 | 100 | -> | Plus |
arm_2L | 6040008..6040287 | 1758..2037 | 100 | -> | Plus |
arm_2L | 6040339..6040613 | 2038..2312 | 100 | -> | Plus |
arm_2L | 6040669..6040864 | 2313..2508 | 100 | -> | Plus |
arm_2L | 6040924..6041131 | 2509..2716 | 100 | | Plus |
BS10447.pep Sequence
Translation from 16 to 2715
> BS10447.pep
MYLNHLPRTQWKYLQYLLRVRQLQLLRRHVNIGAKPPIQTAALLPALGQK
LRKHSQLVNGDLQDKFGVPREQDALLTRLEEAKTGNQILDVLESCDGLQS
SHVVMGISLLWNIYHDAEQASKDAITDRVLLNVLPKLAPYVHQLEIDDLS
RCYLYLRKMHIPNSEAVVEAVLTRSLQLIESQVDDEVIPLTSLSRLSVGI
NLERDFFTPLVCRNFIPHLEHHINWCRSAEQVRLLSTCLFQLHFLIDEEL
FTRFKLRLTEMMQSGVLSSETPKALLKVIHMLNIPVWSQTHTQLIREVML
VLRPCIHQMESADLKSICRTFLHHQEPAALIEPLKKALEKLLQEEGTADA
LFCAVPFATPLQRDQYLHQFKELLYSEEAWQQPNASGHLFSVLRALKVSD
IEFCNTYWSGVVKELESCPEKHLHLRFLRHCQRYMNFNNNLGGTYRHLEL
ERKLSRMCMNAIEHDIAGRLPAKFARLASFVLAYGQTPLAWKKFPNFLLS
KMLAMAPQLGIQDCFLLSRGMQIASELRFRQHLPALAGMQLSTMDSILIG
CAERHLRDAEKDPLNASELSMIVRTLSHRKKLKNTVVYNQALAQYKNLHC
NDLNSRVVRDMAYNFNASNFFVPELLESMFAYISEQHDHVSGDTVEKVLT
CSYNLGYMPASVEALNHASEVLLRDFDQMSGLSVVQACLALCFYKSIPEQ
LINQVFCVKFIQRIEDEIQVCYSKATYPERVLNLVMQLNRTVCLDFPEAN
VPWFQQNYIEAQISKKSLIPSESTTEVKQLLHQLLQNDKHFRCNHTTPYG
YQIDFVIHFDRDKNPIPAPPVEATMLDRITKVAILLLKLDSFCENDLTAL
RGPESLKMRHLEMMGYKVMQINEHDWNSKYMASSTAKANYLKCLLQISH*
BS10447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31643-PB | 899 | CG31643-PB | 1..899 | 1..899 | 4684 | 100 | Plus |
CG31643-PA | 899 | CG31643-PA | 1..899 | 1..899 | 4684 | 100 | Plus |