Clone BS10451 Report

Search the DGRC for BS10451

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptHsc70Cb-RB
Protein status:BS10451.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10451.3prime Sequence

936 bp (882 high quality bases) assembled on 2006-04-19

> BS10451.3prime
ATGGTCTAGAAAGCTTTCACTCCACTTCCATGGAGGGATCGTTTCCGGCC
GCGCTCTGGCCATTGTTATCCACATCCATTTTGTCGCCAGAATTGGCCGC
TGGCTCGCCGCCATTCTGTTCCGCATTCGCCTCGTCCTTGGGCGGTGTTG
CTGTCTTGGCCGGAGTTGGCTTCGGTTTCGCCCTGTTGATCACCGAACTG
ACGCACGAATTTAGAGTTTGCACCTCTTGGCGCACGGCGGAAATCTGGAC
GGGACTGTCAGCGGTGCGCGGCGACTGTGTGAACTTGGGCAGATTTGCAT
CCAGCCACGATTGCGCTTTGTCCGCCGTCTCCGAGATGTTGATGAACTCG
GTTTCCGTTAGATGATCGTACTTGGGCACACCCTTGCGGAACTCGGCCAC
TGCCAGACGTGCAATGGCAATGCTGTTCTTCAGCTCATCAAATGCAGCTG
GTCCCTGCTCATAGTCGCTGGCGCGTAGCTTGATGGGATCCGTCTTCTGG
TGCAGGGCCTGCAGGCGGCTGGTATAGATGTCACGCTCGCAGTCCTCGCC
ATCCTCGTACAGCCAGTTCTCGAGATCATTTAACTGCGACACGATTTTCT
CGCGCTCAGCCTCAACCACGTATCGCTCGAAGGGTCCACCCTGCAGTTTG
TTGCGCATATCGTAGACGAACTCCTCCAAGGCATTCTTGGCATCAATGCG
TTCCGTTTCCTTCTGATCGTTGCCAATCATTTTTGACTCTTGCTGTGTGT
AGTTGCTCAGGTCGACGGGGCTGAAGCCGTGTGTGGTGCACTCCAGCGGC
AATTCGGTGGCTTTGGAAGCCTTCTTCTTTTTATCAGCGCCCTCTTGCTG
ACCATCCGCAGGTTCTCCAGTATTGTTGGTCTGATCGCCTGGTTTTTCTT
CACTGGCAGCCTGCTCAGCAGCTGCGGCAGCCTCTT

BS10451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6603-PA 2415 Hsc70Cb-RA 1496..2415 936..17 4600 100 Minus
CG6603-PB 2415 Hsc70Cb-RB 1496..2415 936..17 4600 100 Minus
CG6603-PC 2415 Hsc70Cb-RC 1496..2415 936..17 4600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 3590 CG6603-RI 2056..2975 936..17 4600 100 Minus
Hsc70Cb-RF 3159 CG6603-RF 1752..2671 936..17 4600 100 Minus
Hsc70Cb-RE 3184 CG6603-RE 1777..2696 936..17 4600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14042443..14043071 645..17 3145 100 Minus
3L 28110227 3L 14042157..14042360 843..640 1020 100 Minus
3L 28110227 3L 14040500..14040595 936..841 480 100 Minus
Blast to na_te.dros performed 2015-02-06 17:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
jockey 5020 jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). 3707..3796 779..689 110 62.4 Minus

BS10451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:25 Download gff for BS10451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1496..2415 17..936 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:20 Download gff for BS10451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1496..2415 17..936 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:31:42 Download gff for BS10451.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 1777..2698 13..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:29:21 Download gff for BS10451.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 1777..2698 13..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:29:21 Download gff for BS10451.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14040500..14040594 842..936 100 -> Minus
3L 14042159..14042359 641..841 100 -> Minus
3L 14042448..14043073 13..640 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:31:42 Download gff for BS10451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14033600..14033694 842..936 100 -> Minus
arm_3L 14035259..14035459 641..841 100 -> Minus
arm_3L 14035548..14036173 13..640 99   Minus

BS10451.5prime Sequence

825 bp (824 high quality bases) assembled on 2006-04-19

> BS10451.5prime
GAAGTTATCAGTCGACATGTCCGTGATTGGCATCGATTTTGGCAACGAGA
GCTGCTATGTTGCGGCAGCCCGATCCGGAGGAATTGAGACGCTGGCCAAT
GACTACAGTCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAA
GCGTATCATCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAA
ACACAGTTGGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCC
CATGTACAACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGG
TGATGGCAGCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATT
TCGGACCTGAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACA
TCGGCGGCTGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCC
CGTGTTCTTTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGA
TCGCCGGACTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCGCG
CTGGCCTACGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAA
CGTGATCTTTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTG
CCTTCACCAAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATC
GGTGGACGCGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTT
CCAGGAGCGTTACAAGATCAACGCCAAGACCAATGCCCGTGCCAATCTGC
GCCTGTTAACCGAAATCGAAAAGCT

BS10451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6603-PA 2415 Hsc70Cb-RA 1..809 17..825 4045 100 Plus
CG6603-PB 2415 Hsc70Cb-RB 1..809 17..825 4045 100 Plus
CG6603-PC 2415 Hsc70Cb-RC 1..809 17..825 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 3590 CG6603-RI 561..1369 17..825 4045 100 Plus
Hsc70Cb-RH 3258 CG6603-RH 260..1068 17..825 4045 100 Plus
Hsc70Cb-RG 3283 CG6603-RG 285..1093 17..825 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14039048..14039749 124..825 3510 100 Plus
3L 28110227 3L 14037644..14037750 17..123 535 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:34:02 has no hits.

BS10451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:26 Download gff for BS10451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1..809 17..825 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:23 Download gff for BS10451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6603-PC 1..809 17..825 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:20 Download gff for BS10451.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RG 277..1093 10..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:15:40 Download gff for BS10451.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RG 277..1093 10..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:15:40 Download gff for BS10451.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14037636..14037750 10..123 96 -> Plus
3L 14039048..14039749 124..825 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:20 Download gff for BS10451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14030736..14030850 10..123 96 -> Plus
arm_3L 14032148..14032849 124..825 100   Plus

BS10451.complete Sequence

2447 bp assembled on 2007-11-30

GenBank Submission: FJ636668

> BS10451.complete
GAAGTTATCAGTCGACATGTCCGTGATTGGCATCGATTTTGGCAACGAGA
GCTGCTATGTTGCGGCAGCCCGATCCGGAGGAATTGAGACGCTGGCCAAT
GACTACAGTCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAA
GCGTATCATCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAA
ACACAGTTGGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCC
CATGTACAACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGG
TGATGGCAGCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATT
TCGGACCTGAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACA
TCGGCGGCTGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCC
CGTGTTCTTTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGA
TCGCCGGACTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCGCG
CTGGCCTACGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAA
CGTGATCTTTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTG
CCTTCACCAAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATC
GGTGGACGCGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTT
CCAGGAGCGTTACAAGATCAACGCCAAGACCAATGCCCGTGCCAATCTGC
GCCTGTTAACCGAAATCGAAAAGCTGAAGAAGCAGATGTCCGCCAACAGC
ACCAAGCTGCCGTTGAACATTGAGTGCTTCTTGGATGATATCGACGTCTC
GTCGTCCATGCAGCGGTCGCAGATGGAGGAGCTGTGCGCCCCCGTCTTGC
AGCGCGTCGAGCAGACTTTCAAGCGTTTGCTAGCCGAGTCTAAGCTGCAG
CTGGACGACATTCACTCCGTGGAGATCGTTGGCGGAAGCTCACGCATTCC
GTCCGTAAAGCAGCTTATTGAGCAGGTCTTTAACAAGCCGGCTAGCACCA
CTCTTAACCAGGACGAAGCTGTGTCTCGCGGAGCAGCCCTTCAGTGCGCC
ATCATGTCGCCAGCTGTACGCGTCCGAGAGTTTGGCGTCACTGATATACA
GAACTACGCCGTTAAGGTGCTGTGGGACAGTGAGGGCTCCGCTGCTCCGG
GAGAGATCGAGATCTTCCCGCAATACCATGCTTCTCCGTTCAGTCGCCTG
CTGACAATCAACCGCAAGGGACCGTTCAACGTTTCGATTGTGTATGGCCA
ACAGGTGCCCTATCCAGATCAAACGATTGGCGTGTGGAAGGTCAAGGATG
TAAAGCCGACGGAACGCGGCGAGGGTCAGGATGTAAAGCTGAAAGTGCGC
ATCAACAACAATGGCATTGTGCTAATCTCGTCCGCCACTTTGGTGGAAAA
GAAGGAGGCCGAAGAGGCTGCCGCAGCTGCTGAGCAGGCTGCCAGTGAAG
AAAAACCAGGCGATCAGACCAACAATACTGGAGAACCTGCGGATGGTCAG
CAAGAGGGCGCTGATAAAAAGAAGAAGGCTTCCAAAGCCACCGAATTGCC
GCTGGAGTGCACCACACACGGCTTCAGCCCCGTCGACCTGAGCAACTACA
CACAGCAAGAGTCAAAAATGATTGGCAACGATCAGAAGGAAACGGAACGC
ATTGATGCCAAGAATGCCTTGGAGGAGTTCGTCTACGATATGCGCAACAA
ACTGCAGGGTGGACCCTTCGAGCGATACGTGGTTGAGGCTGAGCGCGAGA
AAATCGTGTCGCAGTTAAATGATCTCGAGAACTGGCTGTACGAGGATGGC
GAGGACTGCGAGCGTGACATCTATACCAGCCGCCTGCAGGCCCTGCACCA
GAAGACGGATCCCATCAAGCTACGCGCCAGCGACTATGAGCAGGGACCAG
CTGCATTTGATGAGCTGAAGAACAGCATTGCCATTGCACGTCTGGCAGTG
GCCGAGTTCCGCAAGGGTGTGCCCAAGTACGATCATCTAACGGAAACCGA
GTTCATCAACATCTCGGAGACGGCGGACAAAGCGCAATCGTGGCTGGATG
CAAATCTGCCCAAGTTCACACAGTCGCCGCGCACCGCTGACAGTCCCGTC
CAGATTTCCGCCGTGCGCCAAGAGGTGCAAACTCTAAATTCGTGCGTCAG
TTCGGTGATCAACAGGGCGAAACCGAAGCCAACTCCGGCCAAGACAGCAA
CACCGCCCAAGGACGAGGCGAATGCGGAACAGAATGGCGGCGAGCCAGCG
GCCAATTCTGGCGACAAAATGGATGTGGATAACAATGGCCAGAGCGCGGC
CGGAAACGATCCCTCCATGGAAGTGGAGTGAAAGCTTTCTAGACCAT

BS10451.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 2415 CG6603-PI 1..2415 17..2431 12075 100 Plus
Hsc70Cb-RF 2415 CG6603-PF 1..2415 17..2431 12075 100 Plus
Hsc70Cb-RE 2415 CG6603-PE 1..2415 17..2431 12075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-RI 3590 CG6603-RI 561..2975 17..2431 12075 100 Plus
Hsc70Cb-RF 3159 CG6603-RF 257..2671 17..2431 12075 100 Plus
Hsc70Cb-RE 3184 CG6603-RE 282..2696 17..2431 12075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14039048..14040001 124..1077 4770 100 Plus
3L 28110227 3L 14042443..14043071 1803..2431 3145 100 Plus
3L 28110227 3L 14040062..14040595 1074..1607 2670 100 Plus
3L 28110227 3L 14042157..14042360 1605..1808 1020 100 Plus
3L 28110227 3L 14037644..14037750 17..123 535 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:03:58 has no hits.

BS10451.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:35 Download gff for BS10451.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RC 1..2415 17..2431 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:08 Download gff for BS10451.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RC 382..2806 10..2435 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:37 Download gff for BS10451.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 282..2695 17..2430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:52 Download gff for BS10451.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RC 390..2803 17..2430 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:27 Download gff for BS10451.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70Cb-RE 282..2695 17..2430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:27 Download gff for BS10451.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14037644..14037750 17..123 100 -> Plus
3L 14039048..14039999 124..1075 100 -> Plus
3L 14040064..14040594 1076..1606 100 -> Plus
3L 14042159..14042359 1607..1807 100 -> Plus
3L 14042448..14043070 1808..2430 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:37 Download gff for BS10451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14030744..14030850 17..123 100 -> Plus
arm_3L 14032148..14033099 124..1075 100 -> Plus
arm_3L 14033164..14033694 1076..1606 100 -> Plus
arm_3L 14035259..14035459 1607..1807 100 -> Plus
arm_3L 14035548..14036170 1808..2430 100   Plus

BS10451.pep Sequence

Translation from 16 to 2430

> BS10451.pep
MSVIGIDFGNESCYVAAARSGGIETLANDYSLRATPSFVAFDGKKRIIGV
AAKNQQVTNMKNTVGGFKRLLGRKFNDPHVQHELTSIPARVEARGDGSIG
IKVNYLGEDQHFGPEQLTAMLFTKLKETSAAAMQTQVNDCVIACPVFFTN
AERKALLDAAQIAGLNVLRLMNETTATALAYGFYKNDLFEDKPRNVIFVD
FGHSSLQASACAFTKGKLKMLASTWDQIGGRDIDLALGDYFAKEFQERYK
INAKTNARANLRLLTEIEKLKKQMSANSTKLPLNIECFLDDIDVSSSMQR
SQMEELCAPVLQRVEQTFKRLLAESKLQLDDIHSVEIVGGSSRIPSVKQL
IEQVFNKPASTTLNQDEAVSRGAALQCAIMSPAVRVREFGVTDIQNYAVK
VLWDSEGSAAPGEIEIFPQYHASPFSRLLTINRKGPFNVSIVYGQQVPYP
DQTIGVWKVKDVKPTERGEGQDVKLKVRINNNGIVLISSATLVEKKEAEE
AAAAAEQAASEEKPGDQTNNTGEPADGQQEGADKKKKASKATELPLECTT
HGFSPVDLSNYTQQESKMIGNDQKETERIDAKNALEEFVYDMRNKLQGGP
FERYVVEAEREKIVSQLNDLENWLYEDGEDCERDIYTSRLQALHQKTDPI
KLRASDYEQGPAAFDELKNSIAIARLAVAEFRKGVPKYDHLTETEFINIS
ETADKAQSWLDANLPKFTQSPRTADSPVQISAVRQEVQTLNSCVSSVINR
AKPKPTPAKTATPPKDEANAEQNGGEPAANSGDKMDVDNNGQSAAGNDPS
MEVE*

BS10451.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70Cb-PI 804 CG6603-PI 1..804 1..804 4108 100 Plus
Hsc70Cb-PF 804 CG6603-PF 1..804 1..804 4108 100 Plus
Hsc70Cb-PE 804 CG6603-PE 1..804 1..804 4108 100 Plus
Hsc70Cb-PC 804 CG6603-PC 1..804 1..804 4108 100 Plus
Hsc70Cb-PB 804 CG6603-PB 1..804 1..804 4108 100 Plus