Clone Sequence Records
BS10451.3prime Sequence
936 bp (882 high quality bases) assembled on 2006-04-19
> BS10451.3prime
ATGGTCTAGAAAGCTTTCACTCCACTTCCATGGAGGGATCGTTTCCGGCC
GCGCTCTGGCCATTGTTATCCACATCCATTTTGTCGCCAGAATTGGCCGC
TGGCTCGCCGCCATTCTGTTCCGCATTCGCCTCGTCCTTGGGCGGTGTTG
CTGTCTTGGCCGGAGTTGGCTTCGGTTTCGCCCTGTTGATCACCGAACTG
ACGCACGAATTTAGAGTTTGCACCTCTTGGCGCACGGCGGAAATCTGGAC
GGGACTGTCAGCGGTGCGCGGCGACTGTGTGAACTTGGGCAGATTTGCAT
CCAGCCACGATTGCGCTTTGTCCGCCGTCTCCGAGATGTTGATGAACTCG
GTTTCCGTTAGATGATCGTACTTGGGCACACCCTTGCGGAACTCGGCCAC
TGCCAGACGTGCAATGGCAATGCTGTTCTTCAGCTCATCAAATGCAGCTG
GTCCCTGCTCATAGTCGCTGGCGCGTAGCTTGATGGGATCCGTCTTCTGG
TGCAGGGCCTGCAGGCGGCTGGTATAGATGTCACGCTCGCAGTCCTCGCC
ATCCTCGTACAGCCAGTTCTCGAGATCATTTAACTGCGACACGATTTTCT
CGCGCTCAGCCTCAACCACGTATCGCTCGAAGGGTCCACCCTGCAGTTTG
TTGCGCATATCGTAGACGAACTCCTCCAAGGCATTCTTGGCATCAATGCG
TTCCGTTTCCTTCTGATCGTTGCCAATCATTTTTGACTCTTGCTGTGTGT
AGTTGCTCAGGTCGACGGGGCTGAAGCCGTGTGTGGTGCACTCCAGCGGC
AATTCGGTGGCTTTGGAAGCCTTCTTCTTTTTATCAGCGCCCTCTTGCTG
ACCATCCGCAGGTTCTCCAGTATTGTTGGTCTGATCGCCTGGTTTTTCTT
CACTGGCAGCCTGCTCAGCAGCTGCGGCAGCCTCTT
BS10451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6603-PA | 2415 | Hsc70Cb-RA | 1496..2415 | 936..17 | 4600 | 100 | Minus |
CG6603-PB | 2415 | Hsc70Cb-RB | 1496..2415 | 936..17 | 4600 | 100 | Minus |
CG6603-PC | 2415 | Hsc70Cb-RC | 1496..2415 | 936..17 | 4600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70Cb-RI | 3590 | CG6603-RI | 2056..2975 | 936..17 | 4600 | 100 | Minus |
Hsc70Cb-RF | 3159 | CG6603-RF | 1752..2671 | 936..17 | 4600 | 100 | Minus |
Hsc70Cb-RE | 3184 | CG6603-RE | 1777..2696 | 936..17 | 4600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14042443..14043071 | 645..17 | 3145 | 100 | Minus |
3L | 28110227 | 3L | 14042157..14042360 | 843..640 | 1020 | 100 | Minus |
3L | 28110227 | 3L | 14040500..14040595 | 936..841 | 480 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 17:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey | 5020 | jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). | 3707..3796 | 779..689 | 110 | 62.4 | Minus |
BS10451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:25 Download gff for
BS10451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6603-PC | 1496..2415 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:20 Download gff for
BS10451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6603-PC | 1496..2415 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:31:42 Download gff for
BS10451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RE | 1777..2698 | 13..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:29:21 Download gff for
BS10451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RE | 1777..2698 | 13..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:29:21 Download gff for
BS10451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14040500..14040594 | 842..936 | 100 | -> | Minus |
3L | 14042159..14042359 | 641..841 | 100 | -> | Minus |
3L | 14042448..14043073 | 13..640 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:31:42 Download gff for
BS10451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14033600..14033694 | 842..936 | 100 | -> | Minus |
arm_3L | 14035259..14035459 | 641..841 | 100 | -> | Minus |
arm_3L | 14035548..14036173 | 13..640 | 99 | | Minus |
BS10451.5prime Sequence
825 bp (824 high quality bases) assembled on 2006-04-19
> BS10451.5prime
GAAGTTATCAGTCGACATGTCCGTGATTGGCATCGATTTTGGCAACGAGA
GCTGCTATGTTGCGGCAGCCCGATCCGGAGGAATTGAGACGCTGGCCAAT
GACTACAGTCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAA
GCGTATCATCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAA
ACACAGTTGGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCC
CATGTACAACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGG
TGATGGCAGCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATT
TCGGACCTGAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACA
TCGGCGGCTGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCC
CGTGTTCTTTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGA
TCGCCGGACTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCGCG
CTGGCCTACGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAA
CGTGATCTTTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTG
CCTTCACCAAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATC
GGTGGACGCGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTT
CCAGGAGCGTTACAAGATCAACGCCAAGACCAATGCCCGTGCCAATCTGC
GCCTGTTAACCGAAATCGAAAAGCT
BS10451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6603-PA | 2415 | Hsc70Cb-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
CG6603-PB | 2415 | Hsc70Cb-RB | 1..809 | 17..825 | 4045 | 100 | Plus |
CG6603-PC | 2415 | Hsc70Cb-RC | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70Cb-RI | 3590 | CG6603-RI | 561..1369 | 17..825 | 4045 | 100 | Plus |
Hsc70Cb-RH | 3258 | CG6603-RH | 260..1068 | 17..825 | 4045 | 100 | Plus |
Hsc70Cb-RG | 3283 | CG6603-RG | 285..1093 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14039048..14039749 | 124..825 | 3510 | 100 | Plus |
3L | 28110227 | 3L | 14037644..14037750 | 17..123 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:34:02 has no hits.
BS10451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:26 Download gff for
BS10451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6603-PC | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:23 Download gff for
BS10451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6603-PC | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:20 Download gff for
BS10451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RG | 277..1093 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:15:40 Download gff for
BS10451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RG | 277..1093 | 10..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:15:40 Download gff for
BS10451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14037636..14037750 | 10..123 | 96 | -> | Plus |
3L | 14039048..14039749 | 124..825 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:20 Download gff for
BS10451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14030736..14030850 | 10..123 | 96 | -> | Plus |
arm_3L | 14032148..14032849 | 124..825 | 100 | | Plus |
BS10451.complete Sequence
2447 bp assembled on 2007-11-30
GenBank Submission: FJ636668
> BS10451.complete
GAAGTTATCAGTCGACATGTCCGTGATTGGCATCGATTTTGGCAACGAGA
GCTGCTATGTTGCGGCAGCCCGATCCGGAGGAATTGAGACGCTGGCCAAT
GACTACAGTCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAA
GCGTATCATCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAA
ACACAGTTGGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCC
CATGTACAACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGG
TGATGGCAGCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATT
TCGGACCTGAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACA
TCGGCGGCTGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCC
CGTGTTCTTTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGA
TCGCCGGACTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCGCG
CTGGCCTACGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAA
CGTGATCTTTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTG
CCTTCACCAAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATC
GGTGGACGCGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTT
CCAGGAGCGTTACAAGATCAACGCCAAGACCAATGCCCGTGCCAATCTGC
GCCTGTTAACCGAAATCGAAAAGCTGAAGAAGCAGATGTCCGCCAACAGC
ACCAAGCTGCCGTTGAACATTGAGTGCTTCTTGGATGATATCGACGTCTC
GTCGTCCATGCAGCGGTCGCAGATGGAGGAGCTGTGCGCCCCCGTCTTGC
AGCGCGTCGAGCAGACTTTCAAGCGTTTGCTAGCCGAGTCTAAGCTGCAG
CTGGACGACATTCACTCCGTGGAGATCGTTGGCGGAAGCTCACGCATTCC
GTCCGTAAAGCAGCTTATTGAGCAGGTCTTTAACAAGCCGGCTAGCACCA
CTCTTAACCAGGACGAAGCTGTGTCTCGCGGAGCAGCCCTTCAGTGCGCC
ATCATGTCGCCAGCTGTACGCGTCCGAGAGTTTGGCGTCACTGATATACA
GAACTACGCCGTTAAGGTGCTGTGGGACAGTGAGGGCTCCGCTGCTCCGG
GAGAGATCGAGATCTTCCCGCAATACCATGCTTCTCCGTTCAGTCGCCTG
CTGACAATCAACCGCAAGGGACCGTTCAACGTTTCGATTGTGTATGGCCA
ACAGGTGCCCTATCCAGATCAAACGATTGGCGTGTGGAAGGTCAAGGATG
TAAAGCCGACGGAACGCGGCGAGGGTCAGGATGTAAAGCTGAAAGTGCGC
ATCAACAACAATGGCATTGTGCTAATCTCGTCCGCCACTTTGGTGGAAAA
GAAGGAGGCCGAAGAGGCTGCCGCAGCTGCTGAGCAGGCTGCCAGTGAAG
AAAAACCAGGCGATCAGACCAACAATACTGGAGAACCTGCGGATGGTCAG
CAAGAGGGCGCTGATAAAAAGAAGAAGGCTTCCAAAGCCACCGAATTGCC
GCTGGAGTGCACCACACACGGCTTCAGCCCCGTCGACCTGAGCAACTACA
CACAGCAAGAGTCAAAAATGATTGGCAACGATCAGAAGGAAACGGAACGC
ATTGATGCCAAGAATGCCTTGGAGGAGTTCGTCTACGATATGCGCAACAA
ACTGCAGGGTGGACCCTTCGAGCGATACGTGGTTGAGGCTGAGCGCGAGA
AAATCGTGTCGCAGTTAAATGATCTCGAGAACTGGCTGTACGAGGATGGC
GAGGACTGCGAGCGTGACATCTATACCAGCCGCCTGCAGGCCCTGCACCA
GAAGACGGATCCCATCAAGCTACGCGCCAGCGACTATGAGCAGGGACCAG
CTGCATTTGATGAGCTGAAGAACAGCATTGCCATTGCACGTCTGGCAGTG
GCCGAGTTCCGCAAGGGTGTGCCCAAGTACGATCATCTAACGGAAACCGA
GTTCATCAACATCTCGGAGACGGCGGACAAAGCGCAATCGTGGCTGGATG
CAAATCTGCCCAAGTTCACACAGTCGCCGCGCACCGCTGACAGTCCCGTC
CAGATTTCCGCCGTGCGCCAAGAGGTGCAAACTCTAAATTCGTGCGTCAG
TTCGGTGATCAACAGGGCGAAACCGAAGCCAACTCCGGCCAAGACAGCAA
CACCGCCCAAGGACGAGGCGAATGCGGAACAGAATGGCGGCGAGCCAGCG
GCCAATTCTGGCGACAAAATGGATGTGGATAACAATGGCCAGAGCGCGGC
CGGAAACGATCCCTCCATGGAAGTGGAGTGAAAGCTTTCTAGACCAT
BS10451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70Cb-RI | 2415 | CG6603-PI | 1..2415 | 17..2431 | 12075 | 100 | Plus |
Hsc70Cb-RF | 2415 | CG6603-PF | 1..2415 | 17..2431 | 12075 | 100 | Plus |
Hsc70Cb-RE | 2415 | CG6603-PE | 1..2415 | 17..2431 | 12075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70Cb-RI | 3590 | CG6603-RI | 561..2975 | 17..2431 | 12075 | 100 | Plus |
Hsc70Cb-RF | 3159 | CG6603-RF | 257..2671 | 17..2431 | 12075 | 100 | Plus |
Hsc70Cb-RE | 3184 | CG6603-RE | 282..2696 | 17..2431 | 12075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14039048..14040001 | 124..1077 | 4770 | 100 | Plus |
3L | 28110227 | 3L | 14042443..14043071 | 1803..2431 | 3145 | 100 | Plus |
3L | 28110227 | 3L | 14040062..14040595 | 1074..1607 | 2670 | 100 | Plus |
3L | 28110227 | 3L | 14042157..14042360 | 1605..1808 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 14037644..14037750 | 17..123 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:03:58 has no hits.
BS10451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:35 Download gff for
BS10451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RC | 1..2415 | 17..2431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:08 Download gff for
BS10451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RC | 382..2806 | 10..2435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:37 Download gff for
BS10451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RE | 282..2695 | 17..2430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:52 Download gff for
BS10451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RC | 390..2803 | 17..2430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:27 Download gff for
BS10451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70Cb-RE | 282..2695 | 17..2430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:27 Download gff for
BS10451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14037644..14037750 | 17..123 | 100 | -> | Plus |
3L | 14039048..14039999 | 124..1075 | 100 | -> | Plus |
3L | 14040064..14040594 | 1076..1606 | 100 | -> | Plus |
3L | 14042159..14042359 | 1607..1807 | 100 | -> | Plus |
3L | 14042448..14043070 | 1808..2430 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:37 Download gff for
BS10451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14030744..14030850 | 17..123 | 100 | -> | Plus |
arm_3L | 14032148..14033099 | 124..1075 | 100 | -> | Plus |
arm_3L | 14033164..14033694 | 1076..1606 | 100 | -> | Plus |
arm_3L | 14035259..14035459 | 1607..1807 | 100 | -> | Plus |
arm_3L | 14035548..14036170 | 1808..2430 | 100 | | Plus |
BS10451.pep Sequence
Translation from 16 to 2430
> BS10451.pep
MSVIGIDFGNESCYVAAARSGGIETLANDYSLRATPSFVAFDGKKRIIGV
AAKNQQVTNMKNTVGGFKRLLGRKFNDPHVQHELTSIPARVEARGDGSIG
IKVNYLGEDQHFGPEQLTAMLFTKLKETSAAAMQTQVNDCVIACPVFFTN
AERKALLDAAQIAGLNVLRLMNETTATALAYGFYKNDLFEDKPRNVIFVD
FGHSSLQASACAFTKGKLKMLASTWDQIGGRDIDLALGDYFAKEFQERYK
INAKTNARANLRLLTEIEKLKKQMSANSTKLPLNIECFLDDIDVSSSMQR
SQMEELCAPVLQRVEQTFKRLLAESKLQLDDIHSVEIVGGSSRIPSVKQL
IEQVFNKPASTTLNQDEAVSRGAALQCAIMSPAVRVREFGVTDIQNYAVK
VLWDSEGSAAPGEIEIFPQYHASPFSRLLTINRKGPFNVSIVYGQQVPYP
DQTIGVWKVKDVKPTERGEGQDVKLKVRINNNGIVLISSATLVEKKEAEE
AAAAAEQAASEEKPGDQTNNTGEPADGQQEGADKKKKASKATELPLECTT
HGFSPVDLSNYTQQESKMIGNDQKETERIDAKNALEEFVYDMRNKLQGGP
FERYVVEAEREKIVSQLNDLENWLYEDGEDCERDIYTSRLQALHQKTDPI
KLRASDYEQGPAAFDELKNSIAIARLAVAEFRKGVPKYDHLTETEFINIS
ETADKAQSWLDANLPKFTQSPRTADSPVQISAVRQEVQTLNSCVSSVINR
AKPKPTPAKTATPPKDEANAEQNGGEPAANSGDKMDVDNNGQSAAGNDPS
MEVE*
BS10451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70Cb-PI | 804 | CG6603-PI | 1..804 | 1..804 | 4108 | 100 | Plus |
Hsc70Cb-PF | 804 | CG6603-PF | 1..804 | 1..804 | 4108 | 100 | Plus |
Hsc70Cb-PE | 804 | CG6603-PE | 1..804 | 1..804 | 4108 | 100 | Plus |
Hsc70Cb-PC | 804 | CG6603-PC | 1..804 | 1..804 | 4108 | 100 | Plus |
Hsc70Cb-PB | 804 | CG6603-PB | 1..804 | 1..804 | 4108 | 100 | Plus |