Clone BS10452 Report

Search the DGRC for BS10452

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptLiprin-alpha-RA
Protein status:BS10452.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10452.3prime Sequence

965 bp (863 high quality bases) assembled on 2006-04-19

> BS10452.3prime
ATGGTCTAGAAAGCTTTCAGGAAGCACTGCGCTGCTCATTCTCCGGCCTG
CGATCTGTGGCAATCTGCAGCAGATTATTAAACTCCGTGTCAAGTATTTG
GCGAGCCTGAGCATTTTGTGTAGGTATTTGAAGGGCCAAGCCCATGGCAT
TCGCATCGAAACCCTCGTCCAGGGCCATCAATCCTCCATGCACTCCCGAT
TCGAGCAAGTTATTAGCATATTCCTTCAATCCGATGCTGCCAACCCATCG
GATAACTCTCTCGTTGCTCCAGACTAGTACGTCACACAGGCCGTTTTCAC
TCATCTTGCGCCTGTGCTCCAACTCCGTGCGATCGTAGTTAAGGCGCTTG
AGCATCGATATGCCGTACTGTAGGCTGGTGCGATGGAAACTATCCACCAT
TTTGAGCTGACCACGCAAGTCCTTTTTGGTGAGGTGGTCCAGCATCCGGG
CATCCACCAGACACTCCATGAAGGTTGTGCGATATTGGGGCAGGCCAAGA
CCTGGCAACCAATAGTTACCGATCCACTCATGGTTCATATCGCCAAATGC
CAGAGTGGTGCGAGAGGTTTGTGGCGCCGAGGGAGAGGTCAGTGAAACCA
TTTCCTGAATGGCCAGCCGAAGTTTGAGCCTGTGCAAGGGATTACTGATG
CCAATTTCCCGCTGAATTTCCGTATCGCTTAACGCACTCATGATGGCCCC
GGACTTGACATTGGCTCGACAGGCGGCAACATACCAGGCTGGCATGCCCA
CCCACAGTTCCAACCAGGCGACTATGGTGGGGCCATTCCACAGGGCAAAC
GGTGTGCCCGCCTTCATGGCCTCCCCCAGCAAGTCATTGCGGTAATCATG
CTCCTTCTTCTGCCTGCGGTAGTCAACGCTGCTTATTTTGGATCCCTGGG
AGCTGGCAATGCGGGGCATCATTCCGCCAGTCATGCTCATAGCATCATAG
TTGGAGTCCACCTCG

BS10452.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11199-PB 3606 Liprin-alpha-RB 2658..3606 965..17 4720 99.8 Minus
CG11199-PA 3606 Liprin-alpha-RA 2658..3606 965..17 4720 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Liprin-alpha-RE 4466 CG11199-RE 2861..3809 965..17 4730 99.9 Minus
Liprin-alpha-RD 4949 CG11199-RD 3089..4037 965..17 4730 99.9 Minus
Liprin-alpha-RC 5970 CG11199-RC 2944..3892 965..17 4730 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6730046..6730367 544..223 1610 100 Minus
2L 23513712 2L 6729570..6729780 854..644 1025 99.1 Minus
2L 23513712 2L 6730420..6730540 226..106 605 100 Minus
2L 23513712 2L 6729826..6729935 652..543 550 100 Minus
2L 23513712 2L 6729393..6729504 965..854 545 99.1 Minus
2L 23513712 2L 6730597..6730688 108..17 460 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:47:28 has no hits.

BS10452.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:27 Download gff for BS10452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11199-PA 2658..3606 17..965 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:24 Download gff for BS10452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11199-PA 2658..3606 17..965 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:41 Download gff for BS10452.3prime
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RC 2944..3895 13..965 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:48 Download gff for BS10452.3prime
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RC 2944..3895 13..965 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:48 Download gff for BS10452.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6729393..6729503 855..965 99 -> Minus
2L 6729570..6729772 652..854 100 -> Minus
2L 6729827..6729934 544..651 100 -> Minus
2L 6730047..6730366 224..543 100 -> Minus
2L 6730423..6730539 107..223 100 -> Minus
2L 6730599..6730691 13..106 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:41 Download gff for BS10452.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6729393..6729503 855..965 99 -> Minus
arm_2L 6729570..6729772 652..854 100 -> Minus
arm_2L 6729827..6729934 544..651 100 -> Minus
arm_2L 6730047..6730366 224..543 100 -> Minus
arm_2L 6730423..6730539 107..223 100 -> Minus
arm_2L 6730599..6730691 13..106 97   Minus

BS10452.5prime Sequence

924 bp (820 high quality bases) assembled on 2006-04-19

> BS10452.5prime
GAAGTTATCAGTCGACATGTGGAACATGATGTGCGACGTAATGCCCACGA
TATCCGAGGATAGCATCTCGCAGCGCTCCTCGCAGTTTAGCGGGGAGGAT
GCCAACTTTGAGCAGCTGATGGTCTCCATGCTGGACGAGCGGGACAAGCT
GATGGACAGCCTGAGGGAGGCGCAGGAGCGGCTTAACGAGACGGAGAACA
AGCTGCGTGACGTCGAGAAGGAGCGGGACAGCCTGCAGCGACAGATTAAC
GCTAATCTGCCGCAAGAGTTTGCCACCCTGACCAAGGAGCTGACGCAAGC
GCGGGAGACCCTTTTGGAACGTGACGAGGAGATTGGGGAGCTCAAGGCGG
AGAGGAATAATACCAGGCTTCTCCTCGAACATCTGGAGTGCTTGGTGTCC
CGCCACGAGCGTTCCCTGCGTATGACCGTTGTGAAGCGACAGGCTGCCGC
CCAGAGCGGCGTCTCCAGCGAGGTGGAAGTGCTCAAGGCGCTAAAGTCGC
TGTTCGAGCACCACAAGGCGCTGGACGAGAAGGTGCGCGAGCGGTTGCGG
CTTTCCATCGAGAAGAACAACATGATGGAAGAGGAACTCAGCTCTGCCAA
GGAGGAACTGGCCCAGTACAAGGCGGGCGTGGTGCCAGCTGGCGTGGGCA
GTGGCAGCGGAGCAGGGAGTGCCGCAACCACCGCCGGTGGTGGGGGCGCC
GAGAACGGGCTCAAAGAGAAGATGGCGGGCGTGGGCGGATCTGGTGGCGT
TAATGGCGAGGCAAATGAGCTGAACGACTACGCAGCCAAAACCCACGAGC
TGCAAACCATTATTGAGAAGCAGACCTCGGAACTTTCACAATGGCAGCGA
CGCGTTTCTGATTTGAACAACAAGATTAGTGAGCTTGAGGAGAACATGTC
GCGAGTGCAAAAGGACACTGCAAG

BS10452.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11199-PB 3606 Liprin-alpha-RB 1..899 17..915 4495 100 Plus
CG11199-PA 3606 Liprin-alpha-RA 1..899 17..915 4495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Liprin-alpha-RE 4466 CG11199-RE 204..1112 17..924 4520 99.9 Plus
Liprin-alpha-RD 4949 CG11199-RD 420..1328 17..924 4520 99.9 Plus
Liprin-alpha-RC 5970 CG11199-RC 416..1324 17..924 4520 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6725775..6726129 367..721 1775 100 Plus
2L 23513712 2L 6724848..6725097 17..266 1250 100 Plus
2L 23513712 2L 6726200..6726303 720..823 520 100 Plus
2L 23513712 2L 6725158..6725259 266..367 510 100 Plus
2L 23513712 2L 6726370..6726464 821..915 475 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:02:15 has no hits.

BS10452.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:28 Download gff for BS10452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11199-PA 1..909 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:25 Download gff for BS10452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11199-PA 1..909 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:05:23 Download gff for BS10452.5prime
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RC 416..1324 17..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:02 Download gff for BS10452.5prime
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RC 416..1324 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:02 Download gff for BS10452.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6724848..6725096 17..265 100 -> Plus
2L 6725158..6725259 266..367 100 -> Plus
2L 6725776..6726129 368..721 100 -> Plus
2L 6726202..6726303 722..823 100 -> Plus
2L 6726373..6726474 824..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:05:23 Download gff for BS10452.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6725158..6725259 266..367 100 -> Plus
arm_2L 6724848..6725096 17..265 100 -> Plus
arm_2L 6725776..6726129 368..721 100 -> Plus
arm_2L 6726202..6726303 722..823 100 -> Plus
arm_2L 6726373..6726474 824..924 99   Plus

BS10452.complete Sequence

3638 bp assembled on 2007-11-30

GenBank Submission: FJ636669

> BS10452.complete
GAAGTTATCAGTCGACATGTGGAACATGATGTGCGACGTAATGCCCACGA
TATCCGAGGATAGCATCTCGCAGCGCTCCTCGCAGTTTAGCGGGGAGGAT
GCCAACTTTGAGCAGCTGATGGTCTCCATGCTGGACGAGCGGGACAAGCT
GATGGACAGCCTGAGGGAGGCGCAGGAGCGGCTTAACGAGACGGAGAACA
AGCTGCGTGACGTCGAGAAGGAGCGGGACAGCCTGCAGCGACAGATTAAC
GCTAATCTGCCGCAAGAGTTTGCCACCCTGACCAAGGAGCTGACGCAAGC
GCGGGAGACCCTTTTGGAACGTGACGAGGAGATTGGGGAGCTCAAGGCGG
AGAGGAATAATACCAGGCTTCTCCTCGAACATCTGGAGTGCTTGGTGTCC
CGCCACGAGCGTTCCCTGCGTATGACCGTTGTGAAGCGACAGGCTGCCGC
CCAGAGCGGCGTCTCCAGCGAGGTGGAAGTGCTCAAGGCGCTAAAGTCGC
TGTTCGAGCACCACAAGGCGCTGGACGAGAAGGTGCGCGAGCGGTTGCGG
CTTTCCATCGAGAAGAACAACATGATGGAAGAGGAACTCAGCTCTGCCAA
GGAGGAACTGGCCCAGTACAAGGCGGGCGTGGTGCCAGCTGGCGTGGGCA
GTGGCAGCGGAGCAGGGAGTGCCGCAACCACCGCCGGTGGTGGGGGCGCC
GAGAACGGGCTCAAAGAGAAGATGGCGGGCGTGGGCGGATCTGGTGGCGT
TAATGGCGAGGCAAATGAGCTGAACGACTACGCAGCCAAAACCCACGAGC
TGCAAACCATTATTGAGAAGCAGACCTCGGAACTTTCACAATGGCAGCGA
CGCGTTTCTGATTTGAACAACAAGATTAGTGAGCTTGAGGAGAACATGTC
GCGAGTGCAAAAGGAACACTGCAAGGCCCAAGACCAGTGTGCCAAGCTGC
AGCGGGATCTGCGCGAGAATGTTGCCCAGAAAGAGGATCAGGAGGAGCGC
ATTACCACATTGGAAAAGCGATACCTGAATGCTCAGAGGGAGTCTACATC
GTTGCATGATCTCAACGAGAAACTCGAGCAGGAACTACGGCATAAAGAGG
CGCAGCTCAAGCTGCACGAGGAGAAGATCGGGGCCATCGAGGAGAAGCTG
GAGCTCTCCGAACAGAAGCTCGCCCAGCACGCCAAGCTGCAGCCCGACAT
GGAAGAGCAGCTAAAGGCACGCATGGAGGCATTGACTAAGGCTCAAGAAA
GACACGGTTCTGCAGAAGACCGCATCCGGGGACTGGAGACGAACCTCGAC
GAGAAGACCAACGAGGTGGTAAGACTGAACCAGCGTCTGAAGATGAACGA
GGAGCACAACCTACGGCTTTCCTCCACGGTGGATAAGCTGCTCTCGGAGT
CAAACGAGCGTCTGCAAGTGCACCTGAAGGAGCGTATGCATGCGCTGGAC
GAGAAGAACGCCCTCACCCAGGAACTGGAAAAGGCGCGTAAGGTGGCCGA
GGAGCTACACCACGAGAAGAGCGAAATCATGAAGGAGCTTTCGAAGACGC
GCCTGGAGATCGAGAACTTTAAGCGGCAGCTGCTGCAGCAGGAGATCGCC
TACAACATCCAGCAAACGGAGGCGCTCACGCGGAGCCTTTCGCCCAGTAG
CGTAGTGGACCCCAGTGGCGCCTTCAGCCGGAGCAATTCGCACGCCAGCT
TTGAGACGCACTCCCTGCGCCGCCAGAGCAAACAGCGACTGTCCGAGGAG
AACGCCCTGGTCCGCTCCATGGCCGAGCAGGAATGGGAAAAACTGCAGCA
GGCGGCGCATGCCCAGCAGCAGGCCTACGAGCTGGCCAGCGCTGCGGATT
GCGATGACTCTGATGTCCTGTACGCAGCGGCCACCGACATGATGTCTCCT
TCGGGACACACAGATGCCCAGACATTGGCCATGATGCTGCAGGAACAGTT
GGACGCCATTAACAATGAGATTCGCCTGATCCAGGAGGAAAAGCAGTCAA
CAGAGGCGCGGGCCGAGGAGCTGGAGTCGCGTGTCGGCAGTCTGGAGCAC
GTAAACCTGCTGGCTCGCGGTCGCTCCATGGACAGGCAGAGTCCGCCAAT
GAGTGGCCGGAGCACGCCCAACAGTCCGCAGCGGGATTTCATGCAGAAGT
ATCACACGCTCAACTTGCCCGTGCTGTCCAGCGATGCCTCTCGCGAAGAG
CTCCACGGCGGCATGTCCACCACAGGTGATTCGAGTTCCGGCGGAGCGGC
CTCTCCACTGACCGCCCGCTCTATGCGCCTGGAGCGTGTGGCCCAGGCCT
TGGCCCACAGCCAGGAGGAGCTAAGGCGGCGTTCCATTGGCCTTAATCCC
AATGCTTCAGTGGCGCCCAACCACACTGGCGGTCACATGCCCCTGAGCAG
CCACAGTTACGGACTGTCGCCGCTTAGCTCTCGTTACGGCAGCCAGGAGT
CACTGCGTCACTATAACACAATGGGATCTATGTCCATGCTGCAGACACCT
ACTTCGGGCGTATCCAGGGAAGCGGCAGCCGCTGCTGTCCAAAAGAAGAA
GGGCATTAAGTCCTCGCTGGGTAGGTTCTTTAGCAAAAAGGAGAAGGTGA
AGGGCGTGAAGGATACGCTGCCCGACGGCTCGCCCAGCATGATGTCCATT
GGCAACCTGTCGATTGGACTGAGCGAGGTGGACTCCAACTATGATGCTAT
GAGCATGACTGGCGGAATGATGCCCCGCATTGCCAGCTCCCAGGGATCCA
AAATAAGCAGCGTTGACTACGGCAGGCAGAAGAAGGAGCATGATTACCGC
AATGACTTGCTGGGGGAGGCCATGAAGGCGGGCACACCGTTTGCCCTGTG
GAATGGCCCCACCATAGTCGCCTGGTTGGAACTGTGGGTGGGCATGCCAG
CCTGGTATGTTGCCGCCTGTCGAGCCAATGTCAAGTCCGGGGCCATCATG
AGTGCGTTAAGCGATACGGAAATTCAGCGGGAAATTGGCATCAGTAATCC
CTTGCACAGGCTCAAACTTCGGCTGGCCATTCAGGAAATGGTTTCACTGA
CCTCTCCCTCGGCGCCACAAACCTCTCGCACCACTCTGGCATTTGGCGAT
ATGAACCATGAGTGGATCGGTAACTATTGGTTGCCAGGTCTTGGCCTGCC
CCAATATCGCACAACCTTCATGGAGTGTCTGGTGGATGCCCGGATGCTGG
ACCACCTCACCAAAAAGGACTTGCGTGGTCAGCTCAAAATGGTGGATAGT
TTCCATCGCACCAGCCTACAGTACGGCATATCGATGCTCAAGCGCCTTAA
CTACGATCGCACGGAGTTGGAGCACAGGCGCAAGATGAGTGAAAACGGCC
TGTGTGACGTACTAGTCTGGAGCAACGAGAGAGTTATCCGATGGGTTGGC
AGCATCGGATTGAAGGAATATGCTAATAACTTGCTCGAATCGGGAGTGCA
TGGAGGATTGATGGCCCTGGACGAGGGTTTCGATGCGAATGCCATGGGCT
TGGCCCTTCAAATACCTACACAAAATGCTCAGGCTCGCCAAATACTTGAC
ACGGAGTTTAATAATCTGCTGCAGATTGCCACAGATCGCAGGCCGGAGAA
TGAGCAGCGCAGTGCTTCCTGAAAGCTTTCTAGACCAT

BS10452.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Liprin-alpha-RE 3645 CG11199-PE 1..3606 17..3622 18030 100 Plus
Liprin-alpha-RA 3606 CG11199-PA 1..3606 17..3622 18030 100 Plus
Liprin-alpha-RB 3606 CG11199-PB 1..3606 17..3622 18030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Liprin-alpha-RE 4466 CG11199-RE 204..3809 17..3622 18030 100 Plus
Liprin-alpha-RA 4466 CG11199-RA 204..3809 17..3622 18030 100 Plus
Liprin-alpha-RB 4814 CG11199-RB 297..3902 17..3622 18030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6727861..6728780 1239..2158 4600 100 Plus
2L 23513712 2L 6728877..6729504 2158..2785 3140 100 Plus
2L 23513712 2L 6725775..6726129 367..721 1775 100 Plus
2L 23513712 2L 6730046..6730367 3095..3416 1610 100 Plus
2L 23513712 2L 6724848..6725097 17..266 1250 100 Plus
2L 23513712 2L 6729570..6729780 2785..2995 1025 99.1 Plus
2L 23513712 2L 6726370..6726541 821..992 860 100 Plus
2L 23513712 2L 6727192..6727323 1110..1241 660 100 Plus
2L 23513712 2L 6726597..6726718 990..1111 610 100 Plus
2L 23513712 2L 6730420..6730540 3413..3533 605 100 Plus
2L 23513712 2L 6729826..6729935 2987..3096 550 100 Plus
2L 23513712 2L 6726200..6726303 720..823 520 100 Plus
2L 23513712 2L 6725158..6725259 266..367 510 100 Plus
2L 23513712 2L 6730597..6730688 3531..3622 460 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:32:32 has no hits.

BS10452.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:37 Download gff for BS10452.complete
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RA 1..3606 17..3622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:10 Download gff for BS10452.complete
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RA 200..3808 17..3626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:28 Download gff for BS10452.complete
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RB 420..4024 17..3621 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:14 Download gff for BS10452.complete
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RA 200..3804 17..3621 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:42 Download gff for BS10452.complete
Subject Subject Range Query Range Percent Splice Strand
Liprin-alpha-RB 297..3901 17..3621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:42 Download gff for BS10452.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6727194..6727322 1112..1240 100 -> Plus
2L 6724848..6725096 17..265 100 -> Plus
2L 6725158..6725259 266..367 100 -> Plus
2L 6725776..6726129 368..721 100 -> Plus
2L 6726202..6726303 722..823 100 -> Plus
2L 6726373..6726540 824..991 100 -> Plus
2L 6726599..6726718 992..1111 100 -> Plus
2L 6727863..6728780 1241..2158 100 -> Plus
2L 6728878..6729503 2159..2784 100 -> Plus
2L 6729570..6729772 2785..2987 100 -> Plus
2L 6729827..6729934 2988..3095 100 -> Plus
2L 6730047..6730366 3096..3415 100 -> Plus
2L 6730423..6730539 3416..3532 100 -> Plus
2L 6730599..6730687 3533..3621 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:28 Download gff for BS10452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6726373..6726540 824..991 100 -> Plus
arm_2L 6726599..6726718 992..1111 100 -> Plus
arm_2L 6727194..6727322 1112..1240 100 -> Plus
arm_2L 6727863..6728780 1241..2158 100 -> Plus
arm_2L 6724848..6725096 17..265 100 -> Plus
arm_2L 6725158..6725259 266..367 100 -> Plus
arm_2L 6725776..6726129 368..721 100 -> Plus
arm_2L 6726202..6726303 722..823 100 -> Plus
arm_2L 6728878..6729503 2159..2784 100 -> Plus
arm_2L 6729570..6729772 2785..2987 100 -> Plus
arm_2L 6729827..6729934 2988..3095 100 -> Plus
arm_2L 6730047..6730366 3096..3415 100 -> Plus
arm_2L 6730423..6730539 3416..3532 100 -> Plus
arm_2L 6730599..6730687 3533..3621 100   Plus

BS10452.pep Sequence

Translation from 16 to 3621

> BS10452.pep
MWNMMCDVMPTISEDSISQRSSQFSGEDANFEQLMVSMLDERDKLMDSLR
EAQERLNETENKLRDVEKERDSLQRQINANLPQEFATLTKELTQARETLL
ERDEEIGELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAAAQSGVS
SEVEVLKALKSLFEHHKALDEKVRERLRLSIEKNNMMEEELSSAKEELAQ
YKAGVVPAGVGSGSGAGSAATTAGGGGAENGLKEKMAGVGGSGGVNGEAN
ELNDYAAKTHELQTIIEKQTSELSQWQRRVSDLNNKISELEENMSRVQKE
HCKAQDQCAKLQRDLRENVAQKEDQEERITTLEKRYLNAQRESTSLHDLN
EKLEQELRHKEAQLKLHEEKIGAIEEKLELSEQKLAQHAKLQPDMEEQLK
ARMEALTKAQERHGSAEDRIRGLETNLDEKTNEVVRLNQRLKMNEEHNLR
LSSTVDKLLSESNERLQVHLKERMHALDEKNALTQELEKARKVAEELHHE
KSEIMKELSKTRLEIENFKRQLLQQEIAYNIQQTEALTRSLSPSSVVDPS
GAFSRSNSHASFETHSLRRQSKQRLSEENALVRSMAEQEWEKLQQAAHAQ
QQAYELASAADCDDSDVLYAAATDMMSPSGHTDAQTLAMMLQEQLDAINN
EIRLIQEEKQSTEARAEELESRVGSLEHVNLLARGRSMDRQSPPMSGRST
PNSPQRDFMQKYHTLNLPVLSSDASREELHGGMSTTGDSSSGGAASPLTA
RSMRLERVAQALAHSQEELRRRSIGLNPNASVAPNHTGGHMPLSSHSYGL
SPLSSRYGSQESLRHYNTMGSMSMLQTPTSGVSREAAAAAVQKKKGIKSS
LGRFFSKKEKVKGVKDTLPDGSPSMMSIGNLSIGLSEVDSNYDAMSMTGG
MMPRIASSQGSKISSVDYGRQKKEHDYRNDLLGEAMKAGTPFALWNGPTI
VAWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLK
LRLAIQEMVSLTSPSAPQTSRTTLAFGDMNHEWIGNYWLPGLGLPQYRTT
FMECLVDARMLDHLTKKDLRGQLKMVDSFHRTSLQYGISMLKRLNYDRTE
LEHRRKMSENGLCDVLVWSNERVIRWVGSIGLKEYANNLLESGVHGGLMA
LDEGFDANAMGLALQIPTQNAQARQILDTEFNNLLQIATDRRPENEQRSA
S*

BS10452.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Liprin-alpha-PE 1214 CG11199-PE 1..1201 1..1201 6060 100 Plus
Liprin-alpha-PA 1201 CG11199-PA 1..1201 1..1201 6060 100 Plus
Liprin-alpha-PB 1201 CG11199-PB 1..1201 1..1201 6060 100 Plus
Liprin-alpha-PD 1205 CG11199-PD 1..1205 1..1201 6045 99.7 Plus
Liprin-alpha-PC 1158 CG11199-PC 1..1158 1..1201 5490 92 Plus