Clone BS10453 Report

Search the DGRC for BS10453

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG6659-RA
Protein status:BS10453.pep: full length peptide match
Sequenced Size:2651

Clone Sequence Records

BS10453.3prime Sequence

862 bp (816 high quality bases) assembled on 2006-04-19

> BS10453.3prime
ATGGTCTAGAAAGCTTCTATATGGACATCTCGGGCATCTTGTTGTGCTTG
AGGTTGATCTGGACGCTCTGCGAGAACATCTTGATAATGCCGTAGTGGTC
GTTGGCGAACACTTTCAGGAAGCTGGGCACGTTCTTGTGGAGCAGCTCGT
GGCAGAACTGTGGGTATTTTTGGTAGGCCGGCTGCTTGTCATCCCAAATG
GCCAGCAGATCGCAATCGTCGCGCACTTCGTTGGTGCACTCGTCCAGCGA
TATGATCAAGTACTGGATCTTCAGCTGGGCGCACTGGTTGTAGATATCCG
ACGACTGCTGACGACTGTACACCGAGTACACGTGCTCCGTGCGCTCCGCT
ATCTGACGCATCTCCAGGTGCGCATGGTTGACTATGGGCCGTTTGGTGGT
CAAGTGCACGGTGCCGATGATGTCCACGGGGCCGGCAAAGACCGCATCTC
GCTCTGTGTTCAGCTTGATCCACTCGAGCATGCTGTCCAGGTCGTCACCG
CTCTTGGAGTAGCGCGTGGGGAAGTACTCTTCGCGAATGTTCACCATGCC
CGGATCGAACATGCTGAGCAGGAAGACGGCCAGCGAGACCGACCAGAAGA
TGTTGCGCTGGCGATGGTACCACAGTTTGGAGCAGACGGTGGGTGCGATG
ACGCAGCCCTGCGTGAAGCTGAGGAAGAAGAGCTTGCGCACGGCGAGTCC
GATAAGGGTGAAGACTAGCATCTGCAGGAAGCTGTACACGTAGTGCATGT
TGAGGATCTGTGCGTTGGCCGTGGGCACCACGGAGCTGCGTCTGGAGGAG
CTGCGCTTCCTCTGTCGATGCCCACTCGAGTTTGAGCCGCAGCCGGCGGC
GGTGGCAGAGTG

BS10453.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-PA 2619 CG6659-RA 1774..2619 862..17 4205 99.8 Minus
CG6659-PB 2274 CG6659-RB 1429..2274 862..17 4205 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RB 3426 CG6659-RB 1987..2832 862..17 4215 99.9 Minus
CG6659-RA 3356 CG6659-RA 1917..2762 862..17 4215 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18654807..18655127 542..862 1590 99.7 Plus
X 23542271 X 18653986..18654191 17..222 1030 100 Plus
X 23542271 X 18654546..18654741 347..542 980 100 Plus
X 23542271 X 18654296..18654421 222..347 630 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:33:44 has no hits.

BS10453.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:29 Download gff for BS10453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PB 1429..2274 17..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:27 Download gff for BS10453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PB 1429..2274 17..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:38 Download gff for BS10453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 1917..2766 12..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:24 Download gff for BS10453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 1917..2766 12..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:24 Download gff for BS10453.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18653982..18654190 12..221 99 <- Plus
X 18654296..18654421 222..347 100 <- Plus
X 18654547..18654740 348..541 100 <- Plus
X 18654807..18655127 542..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:38 Download gff for BS10453.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18548840..18549160 542..862 99   Plus
arm_X 18548015..18548223 12..221 99 <- Plus
arm_X 18548329..18548454 222..347 100 <- Plus
arm_X 18548580..18548773 348..541 100 <- Plus

BS10453.5prime Sequence

948 bp (867 high quality bases) assembled on 2006-04-19

> BS10453.5prime
GAAGTTATCAGTCGACATGCGCGAGCCCAACCTGTACGTGATCCTGTCGC
ACGCGCTGATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGCATGTGCGC
GTGATCTTCGAGACGCGCACCAACATCCAGCAGCTCAATCAGCTGGAGCG
GGAGGCGCTTCTGCGGCGCGAGGATGCCCTGTACTATGCCTTCTACAAGC
AGCTGGCCGAAGGGCCGGACTTTTGGCACGGCTACGAGCAGCTGAAGAAC
GTCACGGACATCGAGTATCCGCACAGTGTCAATGTGCTGCAGCGATTCTA
CGTGCTGCCGGAGCTGGTCACGGCGTACTTCTTTCACGTAGTGCGCTCCG
GCTTCAATCCAATGGTGCAACCGATGCAGTTCTATCTGGAGTTCGTGTGG
CTGATGGGCGGGGTAACCCTGCTGGTACTCTACCTGTACGGAACGCTGCT
CAGCGAGAACATTTTCGGTGGCATATACGGCGTAATCTCGTACCTGATGT
TCCACAGCTTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGCGGGAGAAC
TTCGCCTTTCCGTTCATTTTCCTGCAGATGTTTTATCTGTGTATCTGCAT
CGGAAGGATCATACACCGACAGCGGCACACATCTCGCATGTTCATGATCT
TCGCCATGTCGCTTTTCACCGCCTGCGCCCTACTCTCCTGGCAGTTCTCC
ACCTTCATCTTCACCACCCAGATCCTGATCATGATGACGTCCTGGAACGC
GAGCGCGCTGCCCACGGCTCTGGTCAACGCCTTCGTGCTGGACTACTCGC
TGTCGCACCTGCTGGGGCACGCTCTCGCCTTTGTAATGTCGCACGGCAAC
AGCCAGCTGCTTCTCACCTGGCAGCTGAGCATCTCGCTGTTCCTATTTTT
GAATACAATGGTGCGACAGTTGCGTCACGTGCGCAGCCGGCGACTGGG

BS10453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-PA 2619 CG6659-RA 1..932 17..948 4610 99.7 Plus
CG6659-PB 2274 CG6659-RB 1..587 362..948 2885 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RA 3356 CG6659-RA 144..1075 17..948 4630 99.8 Plus
CG6659-RB 3426 CG6659-RB 259..1145 62..948 4405 99.8 Plus
CG6659-RB 3426 CG6659-RB 92..138 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18656324..18656645 646..325 1610 100 Minus
X 23542271 X 18655969..18656271 948..646 1485 99.3 Minus
X 23542271 X 18656711..18656976 327..62 1330 100 Minus
X 23542271 X 18657097..18657143 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:23:36 has no hits.

BS10453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:30 Download gff for BS10453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:28 Download gff for BS10453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:31:26 Download gff for BS10453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 137..1075 9..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:16 Download gff for BS10453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 137..1075 9..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:16 Download gff for BS10453.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18655969..18656270 647..948 99 <- Minus
X 18656324..18656645 325..646 100 <- Minus
X 18656714..18656975 63..324 100 <- Minus
X 18657098..18657150 9..62 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:31:26 Download gff for BS10453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18550002..18550303 647..948 99 <- Minus
arm_X 18550357..18550678 325..646 100 <- Minus
arm_X 18550747..18551008 63..324 100 <- Minus
arm_X 18551131..18551183 9..62 94   Minus

BS10453.complete Sequence

2651 bp assembled on 2008-08-14

GenBank Submission: FJ636670

> BS10453.complete
GAAGTTATCAGTCGACATGCGCGAGCCCAACCTGTACGTGATCCTGTCGC
ACGCGCTGATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGCATGTGCGC
GTGATCTTCGAGACGCGCACCAACATCCAGCAGCTCAATCAGCTGGAGCG
GGAGGCGCTTCTGCGGCGCGAGGATGCCCTGTACTATGCCTTCTACAAGC
AGCTGGCCGAAGGGCCGGACTTTTGGCACGGCTACGAGCAGCTGAAGAAC
GTCACGGACATCGAGTATCCGCACAGTGTCAATGTGCTGCAGCGATTCTA
CGTGCTGCCGGAGCTGGTCACGGCGTACTTCTTTCACGTAGTGCGCTCCG
GCTTCAATCCAATGGTGCAACCGATGCAGTTCTATCTGGAGTTCGTGTGG
CTGATGGGCGGGGTAACCCTGCTGGTACTCTACCTGTACGGAACGCTGCT
CAGCGAGAACATTTTCGGTGGCATATACGGCGTAATCTCGTACCTGATGT
TCCACAGCTTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGCGGGAGAAC
TTCGCCTTTCCGTTCATTTTCCTGCAGATGTTTTATCTGTGTATCTGCAT
CGGAAGGATCATACACCGACAGCGGCACACATCTCGCATGTTCATGATCT
TCGCCATGTCGCTTTTCACCGCCTGCGCCCTACTCTCCTGGCAGTTCTCC
ACCTTCATCTTCACCACCCAGATCCTGATCATGATGACGTCCTGGAACGC
GAGCGCGCTGCCCACGGCTCTGGTCAACGCCTTCGTGCTGGACTACTCGC
TGTCGCACCTGCTGGGCCACGCTCTCGCCTTTGTAATGTCGCACGGCAAC
AGCCAGCTGCTTCTCACCTGGCAGCTGAGCATCTCGCTGTTCCTATTTTT
GATTACAATGGTGCGACAGTTGCGTCACGTGCGCAGCCGGCGACTGGGAC
ACGCGCAGGATCTGCTGAACGGCGACTTATTCTCGTTGAAGTTCCTCATG
CTCACACTGCTGCTCGCCAGCAGCGTGCAGACCACGCTGATAGAGCTCTT
CAATCGGGCTGGCGTGGTCAGTGTGACGGAAGGCGACCAGCAGCACTTCT
TCGACATATGTGCCCACTGGGCTCTGCAGGTCAATGTCGGCTTTGTCGCC
CACCTTTCCGCCTGCAATCCGCAGTACGCGCGCGTCGCCTGGTCAGAATT
GTGGCAGCTGGTCAAGACGATGATTGTTAAGCCGTACTGCATGTACGGCG
TGGTCATGCTGGCCATGTTCTTCCGGCGCTGGCGCAAGAGCGGCGCCCCA
GTAAGTGCCCTCACCGAAGAGCAGCGCGAGAGAGCGCGCAAATACGTGCT
GGAAGACTTCATAGAGGAGCACTTCGTTTCCATGAGCGACATGTCTAGCA
AGGAGACGGAGAAACAGCTGTATAAGTGCTTCCGCCTGCTCAAAAGCTGC
GACTACGACTACGAGCGCTACAAGCGCGCACAGGCCAGCCTGCGTAAGGA
GCAGCCGCCCGCCCGCGACGACTTTATGCAGGATATCAAGCGGCTGCGAG
CGCAAATTAACCGCAACAGCGTCAAGCAGCGCAAGGAGCGGGCGCAGGAA
ACCAAAGAAGCGGCCACCGACGGGGCCAGCACGCCGACTGAGGAGGAGGA
TAAGGATCCGGAAGCAGAATCGGAATCGAAGAAGAAGAATCAGGAGCCAG
GTAGTGGCGAAACGGAGACCGAGTCTGCAGCAGATCCCACTGAAACGCCG
CCGTCCAGGTCCGCGGACAATGAAGAGGAGGAGGAGGAACACTCTGCCAC
CGCCGCCGGCTGCGGCTCAAACTCGAGTGGCCATCGACAGAGGAAGCGCA
GCTCCTCCAGACGCAGCTCCGTGGTGCCCACGGCCAACGCACAGATCCTC
AACATGCACTACGTGTACAGCTTCCTGCAGATGCTAGTCTTCACCCTTAT
CGGACTCGCCGTGCGCAAGCTCTTCTTCCTCAGCTTCACGCAGGGCTGCG
TCATCGCACCCACCGTCTGCTCCAAACTGTGGTACCATCGCCAGCGCAAC
ATCTTCTGGTCGGTCTCGCTGGCCGTCTTCCTGCTCAGCATGTTCGATCC
GGGCATGGTGAACATTCGCGAAGAGTACTTCCCCACGCGCTACTCCAAGA
GCGGTGACGACCTGGACAGCATGCTCGAGTGGATCAAGCTGAACACAGAG
CGAGATGCGGTCTTTGCCGGCCCCGTGGACATCATCGGCACCGTGCACTT
GACCACCAAACGGCCCATAGTCAACCATGCGCACCTGGAGATGCGTCAGA
TAGCGGAGCGCACGGAGCACGTGTACTCGGTGTACAGTCGTCAGCAGTCG
TCGGATATCTACAACCAGTGCGCCCAGCTGAAGATCCAGTACTTGATCAT
ATCGCTGGACGAGTGCACCAACGAAGTGCGCGACGATTGCGATCTGCTGG
CCATTTGGGATGACAAGCAGCCGGCCTACCAAAAATACCCACAGTTCTGC
CACGAGCTGCTCCACAAGAACGTGCCCAGCTTCCTGAAAGTGTTCGCCAA
CGACCACTACGGCATTATCAAGATGTTCTCGCAGAGCGTCCAGATCAACC
TCAAGCACAACAAGATGCCCGAGATGTCCATATAGAAGCTTTCTAGACCA
T

BS10453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RA 2619 CG6659-PA 1..2619 17..2635 13095 100 Plus
CG6659-RB 2274 CG6659-PB 1..2274 362..2635 11370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-RA 3356 CG6659-RA 144..2762 17..2635 13095 100 Plus
CG6659-RB 3426 CG6659-RB 259..2832 62..2635 12870 100 Plus
CG6659-RB 3426 CG6659-RB 92..138 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18654807..18656271 2110..646 7325 100 Minus
X 23542271 X 18656324..18656645 646..325 1610 100 Minus
X 23542271 X 18656711..18656976 327..62 1330 100 Minus
X 23542271 X 18653986..18654191 2635..2430 1030 100 Minus
X 23542271 X 18654546..18654741 2305..2110 980 100 Minus
X 23542271 X 18654296..18654421 2430..2305 630 100 Minus
X 23542271 X 18657097..18657143 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:16:21 has no hits.

BS10453.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:26 Download gff for BS10453.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 137..2766 9..2640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:47 Download gff for BS10453.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 144..2762 17..2635 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:42 Download gff for BS10453.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 144..2762 17..2635 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:16 Download gff for BS10453.complete
Subject Subject Range Query Range Percent Splice Strand
CG6659-RA 144..2762 17..2635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:16 Download gff for BS10453.complete
Subject Subject Range Query Range Percent Splice Strand
X 18654547..18654740 2111..2304 100 <- Minus
X 18656324..18656645 325..646 100 <- Minus
X 18656714..18656975 63..324 100 <- Minus
X 18657098..18657143 17..62 100   Minus
X 18653986..18654190 2431..2635 100 <- Minus
X 18654296..18654421 2305..2430 100 <- Minus
X 18654807..18656270 647..2110 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:47 Download gff for BS10453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18550357..18550678 325..646 100 <- Minus
arm_X 18550747..18551008 63..324 100 <- Minus
arm_X 18551131..18551176 17..62 100   Minus
arm_X 18548019..18548223 2431..2635 100 <- Minus
arm_X 18548329..18548454 2305..2430 100 <- Minus
arm_X 18548580..18548773 2111..2304 100 <- Minus
arm_X 18548840..18550303 647..2110 100 <- Minus

BS10453.pep Sequence

Translation from 16 to 2634

> BS10453.pep
MREPNLYVILSHALIGCGFFFLYVQHVRVIFETRTNIQQLNQLEREALLR
REDALYYAFYKQLAEGPDFWHGYEQLKNVTDIEYPHSVNVLQRFYVLPEL
VTAYFFHVVRSGFNPMVQPMQFYLEFVWLMGGVTLLVLYLYGTLLSENIF
GGIYGVISYLMFHSFVAKIYERPLARENFAFPFIFLQMFYLCICIGRIIH
RQRHTSRMFMIFAMSLFTACALLSWQFSTFIFTTQILIMMTSWNASALPT
ALVNAFVLDYSLSHLLGHALAFVMSHGNSQLLLTWQLSISLFLFLITMVR
QLRHVRSRRLGHAQDLLNGDLFSLKFLMLTLLLASSVQTTLIELFNRAGV
VSVTEGDQQHFFDICAHWALQVNVGFVAHLSACNPQYARVAWSELWQLVK
TMIVKPYCMYGVVMLAMFFRRWRKSGAPVSALTEEQRERARKYVLEDFIE
EHFVSMSDMSSKETEKQLYKCFRLLKSCDYDYERYKRAQASLRKEQPPAR
DDFMQDIKRLRAQINRNSVKQRKERAQETKEAATDGASTPTEEEDKDPEA
ESESKKKNQEPGSGETETESAADPTETPPSRSADNEEEEEEHSATAAGCG
SNSSGHRQRKRSSSRRSSVVPTANAQILNMHYVYSFLQMLVFTLIGLAVR
KLFFLSFTQGCVIAPTVCSKLWYHRQRNIFWSVSLAVFLLSMFDPGMVNI
REEYFPTRYSKSGDDLDSMLEWIKLNTERDAVFAGPVDIIGTVHLTTKRP
IVNHAHLEMRQIAERTEHVYSVYSRQQSSDIYNQCAQLKIQYLIISLDEC
TNEVRDDCDLLAIWDDKQPAYQKYPQFCHELLHKNVPSFLKVFANDHYGI
IKMFSQSVQINLKHNKMPEMSI*

BS10453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6659-PA 872 CG6659-PA 1..872 1..872 4555 100 Plus
CG6659-PB 757 CG6659-PB 1..757 116..872 3942 100 Plus