Clone Sequence Records
BS10457.3prime Sequence
920 bp (846 high quality bases) assembled on 2006-04-19
> BS10457.3prime
ATGGTCTAGAAAGCTTCTACTTTCCAGCTCCGCCGGCTGAACCGTTGTTG
TTGCTGCGGCTATTGTTGTTATTGTTGGCATTTCGGAACGGAATCGAGGC
GCGCTGATCCTCCATGCGACCGCTCTGGACCTTCATGATCAGTGAGAAGA
AGTCCTCATCGGGGACGGTAGCTCCACGTCCGGTCTGTCCGCGTGGTGCC
CCTGGAACAGCAGCCTCTGGGACGGATCGCGGTGGTGCCTCCGCCTCTGC
GTCCATGGTGACATTGGGGCGCGGTAACTCGGACCGCTGCTCCTCCAGAC
GCGAGCCTTGGCAGCGCATAAGCATGTCTAGGAAGTCATCATCGGGCTGC
TGCGTAGTGGTGGCGCTCCTGGCGAGCGGCCCATGTCCAATGGCTGATGG
ATTCGCCGACGACGGTGACTTGAGGCCAGGCAGGTTGGTGGGATCCACGA
ACAACGAGTTCTGCTGCACAAGCGGCTTACGCGTGGCGCCAGTGGCCACC
GCCGGAGCTCCGGCGGGATTCACCTTGATCGAACAGCGCTGGTCATCCAT
GCGCTTCGACTGCGACCGCGAAAGCATCTCGAAAAAGTCGTCGTCTTTGG
CTTTCCTGGTCGCCTGTGCTCGTAGCTTTTCCTCCTGCATGCGCTTTCCA
TCGGGAGTGATCTTGATCAGGTCCAACTGCTCCATGCTCTGGCGACGAAC
GCGCACCATTCTTCCTTGCGAGTTCTCCGATCCATCCGACTGATTTCCGC
TGGCCGAGTGATCGGAGGCGGTGGATCGAGCCTCCTCCTCGGTGGGTGAA
GGCTCGGAGTCGGGCATTCCGAGTAGCTTTCGTAGATCGGAGATGTTCAC
CCTGGCTGTGCTTTCACCACCGGGTCGTGCAGCTCCTTGGNCAGTTGAAG
ATGCTGTTCCGCATACTTTA
BS10457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5692-PA | 1977 | raps-RA | 1126..1977 | 868..17 | 4260 | 100 | Minus |
CG5692-PA | 1977 | raps-RA | 1073..1126 | 920..867 | 251 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 3279 | CG5692-RA | 1321..2226 | 920..16 | 4494 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27584632..27585323 | 707..16 | 3460 | 100 | Minus |
3R | 32079331 | 3R | 27584160..27584376 | 920..705 | 1024 | 99.1 | Minus |
Blast to na_te.dros performed 2015-02-01 10:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2427 | 77..44 | 134 | 88.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1121..1163 | 77..36 | 131 | 81.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2376 | 77..13 | 124 | 69.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6850 | 77..42 | 117 | 80.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2475 | 77..44 | 116 | 82.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2853 | 77..13 | 115 | 68.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6923 | 87..44 | 112 | 72.7 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2641..2673 | 76..44 | 111 | 81.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2617..2654 | 79..42 | 109 | 76.3 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1020 | 78..32 | 109 | 70.2 | Minus |
BS10457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:38 Download gff for
BS10457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-PA | 1074..1977 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:39 Download gff for
BS10457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5692-PA | 1074..1977 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:29:12 Download gff for
BS10457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 1322..2235 | 6..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:05:39 Download gff for
BS10457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pins-RA | 1322..2235 | 6..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:05:39 Download gff for
BS10457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27584161..27584374 | 707..919 | 99 | -> | Minus |
3R | 27584633..27585332 | 6..706 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:29:12 Download gff for
BS10457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23409883..23410096 | 707..919 | 99 | -> | Minus |
arm_3R | 23410355..23411054 | 6..706 | 99 | | Minus |
BS10457.5prime Sequence
869 bp (786 high quality bases) assembled on 2006-04-19
> BS10457.5prime
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAAGGGCCACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCT
BS10457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5692-PA | 1977 | raps-RA | 1..853 | 17..869 | 4190 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 3279 | CG5692-RA | 249..1101 | 17..869 | 4220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27583088..27583940 | 17..869 | 4220 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:53:12 has no hits.
BS10457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:39 Download gff for
BS10457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:40 Download gff for
BS10457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5692-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:41 Download gff for
BS10457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 238..1101 | 5..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:37 Download gff for
BS10457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pins-RA | 238..1101 | 5..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:37 Download gff for
BS10457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27583077..27583940 | 5..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:41 Download gff for
BS10457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23408799..23409662 | 5..869 | 99 | | Plus |
BS10457.complete Sequence
2009 bp assembled on 2007-11-30
> BS10457.complete
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAGGGCCAACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCTTGGCTTTGGCCGTTGAGTTGGGTGAACGCGA
AGTGGAGGCCCAGAGTTGCTACAGCTTGGGCAACACCTACACGTTGCTGC
ACGAGTTCAACACTGCCATCGAGTATCACAATCGACACTTGGCCATTGCC
CAGGAGTTGGGCGATCGAATTGGTGAGGCCAGGGCCTGCTGGTCACTGGG
CAATGCCCACTCTGCCATCGGTGGTCATGAGCGGGCCCTAAAGTATGCGG
AACAGCATCTTCAACTGGCCAAGGAGCTGCACGACCCGGTGGGTGAAAGC
ACAGCCAGGGTGAACATCTCCGATCTACGAAAGCTACTCGGAATGCCCGA
CTCCGAGCCTTCACCCACCGAGGAGGAGGCTCGATCCACCGCCTCCGATC
ACTCGGCCAGCGGAAATCAGTCGGATGGATCGGAGAACTCGCAAGGAAGA
ATGGTGCGCGTTCGTCGCCAGAGCATGGAGCAGTTGGACCTGATCAAGAT
CACTCCCGATGGAAAGCGCATGCAGGAGGAAAAGCTACGAGCACAGGCGA
CCAGGAAAGCCAAAGACGACGACTTTTTCGAGATGCTTTCGCGGTCGCAG
TCGAAGCGCATGGATGACCAGCGCTGTTCGATCAAGGTGAATCCCGCCGG
AGCTCCGGCGGTGGCCACTGGCGCCACGCGTAAGCCGCTTGTGCAGCAGA
ACTCGTTGTTCGTGGATCCCACCAACCTGCCTGGCCTCAAGTCACCGTCG
TCGGCGAATCCATCAGCCATTGGACATGGGCCGCTCGCCAGGAGCGCCAC
CACTACGCAGCAGCCCGATGATGACTTCCTAGACATGCTTATGCGCTGCC
AAGGCTCGCGTCTGGAGGAGCAGCGGTCCGAGTTACCGCGCCCCAATGTC
ACCATGGACGCAGAGGCGGAGGCACCACCGCGATCCGTCCCAGAGGCTGC
TGTTCCAGGGGCACCACGCGGACAGACCGGACGTGGAGCTACCGTCCCCG
ATGAGGACTTCTTCTCACTGATCATGAAGGTCCAGAGCGGTCGCATGGAG
GATCAGCGCGCCTCGATTCCGTTCCGAAATGCCAACAATAACAACAATAG
CCGCAGCAACAACAACGGTTCAGCCGGCGGAGCTGGAAAGTAGAAGCTTT
CTAGACCAT
BS10457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 1977 | CG5692-PA | 1..1977 | 17..1993 | 9885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-RA | 3279 | CG5692-RA | 249..2226 | 17..1994 | 9890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27583088..27584376 | 17..1305 | 6445 | 100 | Plus |
3R | 32079331 | 3R | 27584632..27585323 | 1303..1994 | 3460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2427 | 1933..1966 | 134 | 88.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1121..1163 | 1933..1974 | 131 | 81.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2376 | 1933..1997 | 124 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6850 | 1933..1968 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2475 | 1933..1966 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2853 | 1933..1997 | 115 | 68.2 | Plus |
BS10457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:40 Download gff for
BS10457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 1..1977 | 17..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:14 Download gff for
BS10457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 273..2270 | 5..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:05 Download gff for
BS10457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 249..2225 | 17..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:30 Download gff for
BS10457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
raps-RA | 284..2260 | 17..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:35 Download gff for
BS10457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pins-RA | 249..2225 | 17..1993 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:35 Download gff for
BS10457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27583088..27584374 | 17..1303 | 100 | -> | Plus |
3R | 27584633..27585322 | 1304..1993 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:05 Download gff for
BS10457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23408810..23410096 | 17..1303 | 100 | -> | Plus |
arm_3R | 23410355..23411044 | 1304..1993 | 100 | | Plus |
BS10457.pep Sequence
Translation from 16 to 1992
> BS10457.pep
MSSLSASAENVSSLGLGSGGGGTTSHDGNSQQGSGSDGGSSMCLELALEG
ERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA
MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL
ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF
YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE
FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS
CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA
IGGHERALKYAEQHLQLAKELHDPVGESTARVNISDLRKLLGMPDSEPSP
TEEEARSTASDHSASGNQSDGSENSQGRMVRVRRQSMEQLDLIKITPDGK
RMQEEKLRAQATRKAKDDDFFEMLSRSQSKRMDDQRCSIKVNPAGAPAVA
TGATRKPLVQQNSLFVDPTNLPGLKSPSSANPSAIGHGPLARSATTTQQP
DDDFLDMLMRCQGSRLEEQRSELPRPNVTMDAEAEAPPRSVPEAAVPGAP
RGQTGRGATVPDEDFFSLIMKVQSGRMEDQRASIPFRNANNNNNSRSNNN
GSAGGAGK*
BS10457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pins-PA | 658 | CG5692-PA | 1..658 | 1..658 | 3401 | 100 | Plus |
CG43163-PC | 2523 | CG43163-PC | 210..535 | 50..392 | 482 | 32.4 | Plus |
CG43163-PD | 2523 | CG43163-PD | 210..535 | 50..392 | 482 | 32.4 | Plus |
CG43163-PC | 2523 | CG43163-PC | 404..695 | 84..392 | 416 | 32 | Plus |
CG43163-PD | 2523 | CG43163-PD | 404..695 | 84..392 | 416 | 32 | Plus |
CG43163-PC | 2523 | CG43163-PC | 534..851 | 56..388 | 412 | 33.1 | Plus |
CG43163-PD | 2523 | CG43163-PD | 534..851 | 56..388 | 412 | 33.1 | Plus |
CG43163-PC | 2523 | CG43163-PC | 441..730 | 81..387 | 395 | 31.3 | Plus |
CG43163-PD | 2523 | CG43163-PD | 441..730 | 81..387 | 395 | 31.3 | Plus |
CG43163-PC | 2523 | CG43163-PC | 836..1171 | 45..388 | 313 | 27.5 | Plus |
CG43163-PD | 2523 | CG43163-PD | 836..1171 | 45..388 | 313 | 27.5 | Plus |
CG43163-PC | 2523 | CG43163-PC | 728..1126 | 50..460 | 293 | 25.1 | Plus |
CG43163-PD | 2523 | CG43163-PD | 728..1126 | 50..460 | 293 | 25.1 | Plus |