Clone BS10457 Report

Search the DGRC for BS10457

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:57
Vector:pDNR-Dual
Associated Gene/Transcriptpins-RA
Protein status:BS10457.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10457.3prime Sequence

920 bp (846 high quality bases) assembled on 2006-04-19

> BS10457.3prime
ATGGTCTAGAAAGCTTCTACTTTCCAGCTCCGCCGGCTGAACCGTTGTTG
TTGCTGCGGCTATTGTTGTTATTGTTGGCATTTCGGAACGGAATCGAGGC
GCGCTGATCCTCCATGCGACCGCTCTGGACCTTCATGATCAGTGAGAAGA
AGTCCTCATCGGGGACGGTAGCTCCACGTCCGGTCTGTCCGCGTGGTGCC
CCTGGAACAGCAGCCTCTGGGACGGATCGCGGTGGTGCCTCCGCCTCTGC
GTCCATGGTGACATTGGGGCGCGGTAACTCGGACCGCTGCTCCTCCAGAC
GCGAGCCTTGGCAGCGCATAAGCATGTCTAGGAAGTCATCATCGGGCTGC
TGCGTAGTGGTGGCGCTCCTGGCGAGCGGCCCATGTCCAATGGCTGATGG
ATTCGCCGACGACGGTGACTTGAGGCCAGGCAGGTTGGTGGGATCCACGA
ACAACGAGTTCTGCTGCACAAGCGGCTTACGCGTGGCGCCAGTGGCCACC
GCCGGAGCTCCGGCGGGATTCACCTTGATCGAACAGCGCTGGTCATCCAT
GCGCTTCGACTGCGACCGCGAAAGCATCTCGAAAAAGTCGTCGTCTTTGG
CTTTCCTGGTCGCCTGTGCTCGTAGCTTTTCCTCCTGCATGCGCTTTCCA
TCGGGAGTGATCTTGATCAGGTCCAACTGCTCCATGCTCTGGCGACGAAC
GCGCACCATTCTTCCTTGCGAGTTCTCCGATCCATCCGACTGATTTCCGC
TGGCCGAGTGATCGGAGGCGGTGGATCGAGCCTCCTCCTCGGTGGGTGAA
GGCTCGGAGTCGGGCATTCCGAGTAGCTTTCGTAGATCGGAGATGTTCAC
CCTGGCTGTGCTTTCACCACCGGGTCGTGCAGCTCCTTGGNCAGTTGAAG
ATGCTGTTCCGCATACTTTA

BS10457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5692-PA 1977 raps-RA 1126..1977 868..17 4260 100 Minus
CG5692-PA 1977 raps-RA 1073..1126 920..867 251 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 3279 CG5692-RA 1321..2226 920..16 4494 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27584632..27585323 707..16 3460 100 Minus
3R 32079331 3R 27584160..27584376 920..705 1024 99.1 Minus
Blast to na_te.dros performed 2015-02-01 10:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2427 77..44 134 88.2 Minus
roo 9092 roo DM_ROO 9092bp 1121..1163 77..36 131 81.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2376 77..13 124 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6850 77..42 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2442..2475 77..44 116 82.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2853 77..13 115 68.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6880..6923 87..44 112 72.7 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2641..2673 76..44 111 81.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2617..2654 79..42 109 76.3 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 974..1020 78..32 109 70.2 Minus

BS10457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:38 Download gff for BS10457.3prime
Subject Subject Range Query Range Percent Splice Strand
raps-PA 1074..1977 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:39 Download gff for BS10457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5692-PA 1074..1977 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:29:12 Download gff for BS10457.3prime
Subject Subject Range Query Range Percent Splice Strand
raps-RA 1322..2235 6..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:05:39 Download gff for BS10457.3prime
Subject Subject Range Query Range Percent Splice Strand
pins-RA 1322..2235 6..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:05:39 Download gff for BS10457.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27584161..27584374 707..919 99 -> Minus
3R 27584633..27585332 6..706 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:29:12 Download gff for BS10457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23409883..23410096 707..919 99 -> Minus
arm_3R 23410355..23411054 6..706 99   Minus

BS10457.5prime Sequence

869 bp (786 high quality bases) assembled on 2006-04-19

> BS10457.5prime
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAAGGGCCACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCT

BS10457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5692-PA 1977 raps-RA 1..853 17..869 4190 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 3279 CG5692-RA 249..1101 17..869 4220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27583088..27583940 17..869 4220 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 00:53:12 has no hits.

BS10457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:39 Download gff for BS10457.5prime
Subject Subject Range Query Range Percent Splice Strand
raps-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:40 Download gff for BS10457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5692-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:41 Download gff for BS10457.5prime
Subject Subject Range Query Range Percent Splice Strand
raps-RA 238..1101 5..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:37 Download gff for BS10457.5prime
Subject Subject Range Query Range Percent Splice Strand
pins-RA 238..1101 5..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:37 Download gff for BS10457.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27583077..27583940 5..869 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:41 Download gff for BS10457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23408799..23409662 5..869 99   Plus

BS10457.complete Sequence

2009 bp assembled on 2007-11-30

> BS10457.complete
GAAGTTATCAGTCGACATGTCCTCGCTCTCTGCGTCCGCGGAGAATGTGT
CCAGTTTGGGACTGGGATCGGGCGGAGGAGGAACTACTTCCCACGACGGC
AACTCCCAGCAGGGTTCCGGATCCGACGGAGGATCCAGTATGTGCCTGGA
ACTGGCCCTCGAGGGTGAACGCCTCTGCAAGGCGGGTGACTGCCGGGCGG
GCGTGGCCTTCTTCCAGGCGGCCATTCAGGCCGGAACCGAGGATCTTCGC
ACTCTGTCCGCCATCTACTCCCAGCTGGGCAACGCCTACTTCTACCTAGG
CGACTACAACAAGGCGATGCAGTACCACAAACACGATCTTACGCTGGCCA
AGAGCATGAACGACCGACTGGGCGAGGCCAAGTCCTCTGGCAATCTGGGC
AACACCCTCAAGGTAATGGGTCGCTTCGACGAGGCGGCCATCTGTTGCGA
GAGGCACCTAACGCTGGCCAGGCAGCTGGGAGATCGTCTGTCCGAGGGAC
GCGCTCTTTACAACCTAGGAAATGTCTACCACGCCAAGGGCAAGCACTTG
GGTCAGAGAAACCCTGGAAAGTTCGGCGACGATGTCAAGGAGGCGCTCAC
CCGTGCCGTGGAGTTTTACCAGGAGAATCTGAAGCTCATGCGGGATCTGG
GTGATCGTGGTGCTCAAGGTCGAGCTTGTGGTAATCTGGGAAATACCTAC
TACCTACTAGGCGATTTCCAAGCGGCCATTGAGCATCATCAGGAGCGACT
GCGCATTGCCAGAGAGTTTGGTGATCGCGCGGCTGAGCGAAGGGCCAACA
GTAATCTTGGCAACTCGCACATATTCCTGGGACAATTCGAGGACGCCGCC
GAACACTACAAACGCACCTTGGCTTTGGCCGTTGAGTTGGGTGAACGCGA
AGTGGAGGCCCAGAGTTGCTACAGCTTGGGCAACACCTACACGTTGCTGC
ACGAGTTCAACACTGCCATCGAGTATCACAATCGACACTTGGCCATTGCC
CAGGAGTTGGGCGATCGAATTGGTGAGGCCAGGGCCTGCTGGTCACTGGG
CAATGCCCACTCTGCCATCGGTGGTCATGAGCGGGCCCTAAAGTATGCGG
AACAGCATCTTCAACTGGCCAAGGAGCTGCACGACCCGGTGGGTGAAAGC
ACAGCCAGGGTGAACATCTCCGATCTACGAAAGCTACTCGGAATGCCCGA
CTCCGAGCCTTCACCCACCGAGGAGGAGGCTCGATCCACCGCCTCCGATC
ACTCGGCCAGCGGAAATCAGTCGGATGGATCGGAGAACTCGCAAGGAAGA
ATGGTGCGCGTTCGTCGCCAGAGCATGGAGCAGTTGGACCTGATCAAGAT
CACTCCCGATGGAAAGCGCATGCAGGAGGAAAAGCTACGAGCACAGGCGA
CCAGGAAAGCCAAAGACGACGACTTTTTCGAGATGCTTTCGCGGTCGCAG
TCGAAGCGCATGGATGACCAGCGCTGTTCGATCAAGGTGAATCCCGCCGG
AGCTCCGGCGGTGGCCACTGGCGCCACGCGTAAGCCGCTTGTGCAGCAGA
ACTCGTTGTTCGTGGATCCCACCAACCTGCCTGGCCTCAAGTCACCGTCG
TCGGCGAATCCATCAGCCATTGGACATGGGCCGCTCGCCAGGAGCGCCAC
CACTACGCAGCAGCCCGATGATGACTTCCTAGACATGCTTATGCGCTGCC
AAGGCTCGCGTCTGGAGGAGCAGCGGTCCGAGTTACCGCGCCCCAATGTC
ACCATGGACGCAGAGGCGGAGGCACCACCGCGATCCGTCCCAGAGGCTGC
TGTTCCAGGGGCACCACGCGGACAGACCGGACGTGGAGCTACCGTCCCCG
ATGAGGACTTCTTCTCACTGATCATGAAGGTCCAGAGCGGTCGCATGGAG
GATCAGCGCGCCTCGATTCCGTTCCGAAATGCCAACAATAACAACAATAG
CCGCAGCAACAACAACGGTTCAGCCGGCGGAGCTGGAAAGTAGAAGCTTT
CTAGACCAT

BS10457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 1977 CG5692-PA 1..1977 17..1993 9885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
pins-RA 3279 CG5692-RA 249..2226 17..1994 9890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27583088..27584376 17..1305 6445 100 Plus
3R 32079331 3R 27584632..27585323 1303..1994 3460 100 Plus
Blast to na_te.dros performed 2014-11-28 00:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2427 1933..1966 134 88.2 Plus
roo 9092 roo DM_ROO 9092bp 1121..1163 1933..1974 131 81.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2376 1933..1997 124 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6850 1933..1968 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2442..2475 1933..1966 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2853 1933..1997 115 68.2 Plus

BS10457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:40 Download gff for BS10457.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 1..1977 17..1993 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:14 Download gff for BS10457.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 273..2270 5..2004 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:05 Download gff for BS10457.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 249..2225 17..1993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:30 Download gff for BS10457.complete
Subject Subject Range Query Range Percent Splice Strand
raps-RA 284..2260 17..1993 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:35 Download gff for BS10457.complete
Subject Subject Range Query Range Percent Splice Strand
pins-RA 249..2225 17..1993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:35 Download gff for BS10457.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27583088..27584374 17..1303 100 -> Plus
3R 27584633..27585322 1304..1993 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:05 Download gff for BS10457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23408810..23410096 17..1303 100 -> Plus
arm_3R 23410355..23411044 1304..1993 100   Plus

BS10457.pep Sequence

Translation from 16 to 1992

> BS10457.pep
MSSLSASAENVSSLGLGSGGGGTTSHDGNSQQGSGSDGGSSMCLELALEG
ERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA
MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL
ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF
YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE
FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS
CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA
IGGHERALKYAEQHLQLAKELHDPVGESTARVNISDLRKLLGMPDSEPSP
TEEEARSTASDHSASGNQSDGSENSQGRMVRVRRQSMEQLDLIKITPDGK
RMQEEKLRAQATRKAKDDDFFEMLSRSQSKRMDDQRCSIKVNPAGAPAVA
TGATRKPLVQQNSLFVDPTNLPGLKSPSSANPSAIGHGPLARSATTTQQP
DDDFLDMLMRCQGSRLEEQRSELPRPNVTMDAEAEAPPRSVPEAAVPGAP
RGQTGRGATVPDEDFFSLIMKVQSGRMEDQRASIPFRNANNNNNSRSNNN
GSAGGAGK*

BS10457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
pins-PA 658 CG5692-PA 1..658 1..658 3401 100 Plus
CG43163-PC 2523 CG43163-PC 210..535 50..392 482 32.4 Plus
CG43163-PD 2523 CG43163-PD 210..535 50..392 482 32.4 Plus
CG43163-PC 2523 CG43163-PC 404..695 84..392 416 32 Plus
CG43163-PD 2523 CG43163-PD 404..695 84..392 416 32 Plus
CG43163-PC 2523 CG43163-PC 534..851 56..388 412 33.1 Plus
CG43163-PD 2523 CG43163-PD 534..851 56..388 412 33.1 Plus
CG43163-PC 2523 CG43163-PC 441..730 81..387 395 31.3 Plus
CG43163-PD 2523 CG43163-PD 441..730 81..387 395 31.3 Plus
CG43163-PC 2523 CG43163-PC 836..1171 45..388 313 27.5 Plus
CG43163-PD 2523 CG43163-PD 836..1171 45..388 313 27.5 Plus
CG43163-PC 2523 CG43163-PC 728..1126 50..460 293 25.1 Plus
CG43163-PD 2523 CG43163-PD 728..1126 50..460 293 25.1 Plus