Clone BS10458 Report

Search the DGRC for BS10458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG1812-RA
Protein status:BS10458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10458.3prime Sequence

928 bp (886 high quality bases) assembled on 2006-04-19

> BS10458.3prime
ATGGTCTAGAAAGCTTTTAGGCATCACAATTGGGCACATAGATGGCCACG
CAGGTTGATTCCCACACATCGTTGGGCGAGTCCCACGAGTCCTTTTCGTG
CCACCATTCCTTGGTATCCAAGTCGTAGGCCATTGTTTCCGCACTGGCCC
GATCAATCGACTCCGTGGAGTCCAGTCCGCCCACAAAGAATATTGTTCTG
CCCATCGCGGTCACGCCGGTGTAGAACTTGGGGGCCGGTATCTTGGTCTC
CACGCTCCACGTGTTAGTCTCAATATCATAGGCATATATGTGCTCCACCA
GAACCCGCCATTCCGTCAAACTCTCGTGCCATCCGCCGCAGGCATAGATG
CGATTATCCACCGCCACCAAAACGTGGTCACAACAGGGCGTGGGCATCGA
GGCCAGCTCCTGCCAGACTTCCGTCTTTGTGTCGAATACCCACATGCTTG
CCAGTATGTTGGCCAAGTGGACGCCACCAGAGATGTAAAGCTTATCGCCC
ACAACGACGCCGGCATGCTGACTGCGATTCTCCTGCAGACTAGGCATATA
GGTCCATACATTCTTGGCGATATCGTAGCGCTCCACGTTGGAGATCATGC
GCAGGGCTTCTTCGTTATCATCGTCCAGAATGCCGCCCACCGCATACAGA
TGCTGAGTGCCCACTGCGTTCAACGAGAAACGGCAGCGATCCTGCTGAAT
GGGTGCTATGGTCATCCATGTATTCCTTAGCGGACAGTAGCAGAAGCCAA
AGGGATGGATGTACTCCTTCAAAAAGACATCGTACGCTCCGCCCACGATG
AACAGTTTGTTGTTCAGTACGGCCGTGCCAAAGTTGCACTGATCGATGTG
CGGAATGGCGGTCAACTCATACCAATTCATTTTCTTTGGCGAAAGCACAT
TATTACATTGGTCAGGCCGTTTCACTCG

BS10458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-PA 1851 CG1812-RA 974..1851 894..17 4390 100 Minus
CG1812-PB 1626 CG1812-RB 749..1626 894..17 4390 100 Minus
CG1812-PA 1851 CG1812-RA 939..975 928..892 160 97.2 Minus
CG1812-PB 1626 CG1812-RB 714..750 928..892 160 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 3229 CG1812-RA 1303..2215 928..17 4525 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20514353..20514814 478..17 2310 100 Minus
X 23542271 X 20513831..20514193 837..475 1815 100 Minus
X 23542271 X 20513660..20513752 928..837 400 97.8 Minus
Blast to na_te.dros performed on 2015-01-31 16:49:57 has no hits.

BS10458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:40 Download gff for BS10458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PB 714..1626 17..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:42 Download gff for BS10458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PB 714..1626 17..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:39:55 Download gff for BS10458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 1303..2221 8..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:52:11 Download gff for BS10458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 1303..2221 8..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:52:11 Download gff for BS10458.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20513660..20513751 838..928 97 -> Minus
X 20513831..20514190 478..837 100 -> Minus
X 20514354..20514820 8..477 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:39:55 Download gff for BS10458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20384687..20384778 838..928 97 -> Minus
arm_X 20384858..20385217 478..837 100 -> Minus
arm_X 20385381..20385847 8..477 99   Minus

BS10458.5prime Sequence

919 bp (790 high quality bases) assembled on 2006-04-19

> BS10458.5prime
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAACA
GCTGCCACTGCCTACCAGCTACTACAACCGAATAAACAGGAGCACATGGG
GCACCTACTCAACGGAGTGGTGTCCCTGAAGGATCAGTCACTGCCACANG
GACCAACAACATGCGGGGC

BS10458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-PA 1851 CG1812-RA 1..782 17..798 3910 100 Plus
CG1812-PB 1626 CG1812-RB 1..557 242..798 2785 100 Plus
CG1812-PA 1851 CG1812-RA 820..895 834..909 361 98.6 Plus
CG1812-PB 1626 CG1812-RB 595..670 834..909 361 98.6 Plus
CG1812-PA 1851 CG1812-RA 781..821 796..836 205 100 Plus
CG1812-PB 1626 CG1812-RB 556..596 796..836 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 3229 CG1812-RA 364..1270 16..919 4449 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20512900..20513627 195..919 3479 99.5 Plus
X 23542271 X 20511907..20512088 16..197 910 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:59:03 has no hits.

BS10458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:41 Download gff for BS10458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PA 1..906 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:44 Download gff for BS10458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-PA 1..906 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:35 Download gff for BS10458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 361..1270 9..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:03 Download gff for BS10458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 361..1270 9..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:03 Download gff for BS10458.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20511904..20512087 9..196 97 -> Plus
X 20512902..20513627 197..919 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:35 Download gff for BS10458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20382931..20383114 9..196 97 -> Plus
arm_X 20383929..20384654 197..919 99   Plus

BS10458.complete Sequence

1883 bp assembled on 2007-11-30

GenBank Submission: FJ636672

> BS10458.complete
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAAAC
AGCTGCCACTGCCTACCAGCTACTACAACCGAATAAAACAGGAGCACATG
GGGCACCTACTCAACGGAGTGGTGTCCCTGAAGGATCAGTCACTGCCACA
GGGACCAACAAACATGCGGGGCATGGAGCTGTGTCTGCTGAAGATCGGGG
GCTTCGAGTGGAACGGCCTGACCAATGTAATAATGTGCTTTTCGCCAAAG
AAAATGAATTGGTATGAGTTGACCGCCATTCCGCACATCGATCAGTGCAA
CTTTGGCACGGCCGTACTGAACAACAAACTGTTCATCGTGGGCGGAGCGT
ACGATGTCTTTTTGAAGGAGTACATCCATCCCTTTGGCTTCTGCTACTGT
CCGCTAAGGAATACATGGATGACCATAGCACCCATTCAGCAGGATCGCTG
CCGTTTCTCGTTGAACGCAGTGGGCACTCAGCATCTGTATGCGGTGGGCG
GCATTCTGGACGATGATAACGAAGAAGCCCTGCGCATGATCTCCAACGTG
GAGCGCTACGATATCGCCAAGAATGTATGGACCTATATGCCTAGTCTGCA
GGAGAATCGCAGTCAGCATGCCGGCGTCGTTGTGGGCGATAAGCTTTACA
TCTCTGGTGGCGTCCACTTGGCCAACATACTGGCAAGCATGTGGGTATTC
GACACAAAGACGGAAGTCTGGCAGGAGCTGGCCTCGATGCCCACGCCCTG
TTGTGACCACGTTTTGGTGGCGGTGGATAATCGCATCTATGCCTGCGGCG
GATGGCACGAGAGTTTGACGGAATGGCGGGTTCTGGTGGAGCACATATAT
GCCTATGATATTGAGACTAACACGTGGAGCGTGGAGACCAAGATACCGGC
CCCCAAGTTCTACACCGGCGTGACCGCGATGGGCAGAACAATATTCTTTG
TGGGCGGACTGGACTCCACGGAGTCGATTGATCGGGCCAGTGCGGAAACA
ATGGCCTACGACTTGGATACCAAGGAATGGTGGCACGAAAAGGACTCGTG
GGACTCGCCCAACGATGTGTGGGAATCAACCTGCGTGGCCATCTATGTGC
CCAATTGTGATGCCTAAAAGCTTTCTAGACCAT

BS10458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 1851 CG1812-PA 1..1851 17..1867 9255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-RA 3229 CG1812-RA 364..2215 16..1867 9260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20512900..20513752 195..1047 4265 100 Plus
X 23542271 X 20514353..20514814 1406..1867 2310 100 Plus
X 23542271 X 20513831..20514193 1047..1409 1815 100 Plus
X 23542271 X 20511907..20512088 16..197 910 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:24:59 has no hits.

BS10458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:41 Download gff for BS10458.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 1..1851 17..1867 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:15 Download gff for BS10458.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 358..2218 9..1876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:26 Download gff for BS10458.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 365..2213 17..1865 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:01 Download gff for BS10458.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 362..2210 17..1865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:57 Download gff for BS10458.complete
Subject Subject Range Query Range Percent Splice Strand
CG1812-RA 365..2213 17..1865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:57 Download gff for BS10458.complete
Subject Subject Range Query Range Percent Splice Strand
X 20513831..20514190 1047..1406 100 -> Plus
X 20511908..20512087 17..196 100 -> Plus
X 20512902..20513751 197..1046 100 -> Plus
X 20514354..20514812 1407..1865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:26 Download gff for BS10458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20382935..20383114 17..196 100 -> Plus
arm_X 20383929..20384778 197..1046 100 -> Plus
arm_X 20384858..20385217 1047..1406 100 -> Plus
arm_X 20385381..20385839 1407..1865 100   Plus

BS10458.pep Sequence

Translation from 16 to 1866

> BS10458.pep
MAATPAPAVTPAATATSAAAKIPVNPVSPEEETLLRGLNKLRNEEKLTDV
TLIVEEHRFKAHRVVLAASSDYFCAMFADCAMIESRKDEINLYGIKARAM
GSIIDYIYTSMLELNYDNIEEILAAATHVQVREVIDRCTIFLGAKIEMEN
CLAIAGMADIYGIMDLSERAYRYMCAHFEEFATTSDFKEMKVDQLRFILS
SNYPIDVAEQDLVRLVCSFAIEQQLNESALGDLLRLIKWQHISYKSVDEL
RNMNCSLDKGKQLPLPTSYYNRIKQEHMGHLLNGVVSLKDQSLPQGPTNM
RGMELCLLKIGGFEWNGLTNVIMCFSPKKMNWYELTAIPHIDQCNFGTAV
LNNKLFIVGGAYDVFLKEYIHPFGFCYCPLRNTWMTIAPIQQDRCRFSLN
AVGTQHLYAVGGILDDDNEEALRMISNVERYDIAKNVWTYMPSLQENRSQ
HAGVVVGDKLYISGGVHLANILASMWVFDTKTEVWQELASMPTPCCDHVL
VAVDNRIYACGGWHESLTEWRVLVEHIYAYDIETNTWSVETKIPAPKFYT
GVTAMGRTIFFVGGLDSTESIDRASAETMAYDLDTKEWWHEKDSWDSPND
VWESTCVAIYVPNCDA*

BS10458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1812-PA 616 CG1812-PA 1..616 1..616 3277 100 Plus
kel-PA 689 CG7210-PA 147..665 38..585 468 27.7 Plus
kel-PB 1477 CG7210-PB 147..665 38..585 468 27.7 Plus
dbo-PB 620 CG6224-PB 59..585 35..588 414 26.4 Plus
dbo-PA 623 CG6224-PA 59..585 35..588 414 26.4 Plus