Clone Sequence Records
BS10458.3prime Sequence
928 bp (886 high quality bases) assembled on 2006-04-19
> BS10458.3prime
ATGGTCTAGAAAGCTTTTAGGCATCACAATTGGGCACATAGATGGCCACG
CAGGTTGATTCCCACACATCGTTGGGCGAGTCCCACGAGTCCTTTTCGTG
CCACCATTCCTTGGTATCCAAGTCGTAGGCCATTGTTTCCGCACTGGCCC
GATCAATCGACTCCGTGGAGTCCAGTCCGCCCACAAAGAATATTGTTCTG
CCCATCGCGGTCACGCCGGTGTAGAACTTGGGGGCCGGTATCTTGGTCTC
CACGCTCCACGTGTTAGTCTCAATATCATAGGCATATATGTGCTCCACCA
GAACCCGCCATTCCGTCAAACTCTCGTGCCATCCGCCGCAGGCATAGATG
CGATTATCCACCGCCACCAAAACGTGGTCACAACAGGGCGTGGGCATCGA
GGCCAGCTCCTGCCAGACTTCCGTCTTTGTGTCGAATACCCACATGCTTG
CCAGTATGTTGGCCAAGTGGACGCCACCAGAGATGTAAAGCTTATCGCCC
ACAACGACGCCGGCATGCTGACTGCGATTCTCCTGCAGACTAGGCATATA
GGTCCATACATTCTTGGCGATATCGTAGCGCTCCACGTTGGAGATCATGC
GCAGGGCTTCTTCGTTATCATCGTCCAGAATGCCGCCCACCGCATACAGA
TGCTGAGTGCCCACTGCGTTCAACGAGAAACGGCAGCGATCCTGCTGAAT
GGGTGCTATGGTCATCCATGTATTCCTTAGCGGACAGTAGCAGAAGCCAA
AGGGATGGATGTACTCCTTCAAAAAGACATCGTACGCTCCGCCCACGATG
AACAGTTTGTTGTTCAGTACGGCCGTGCCAAAGTTGCACTGATCGATGTG
CGGAATGGCGGTCAACTCATACCAATTCATTTTCTTTGGCGAAAGCACAT
TATTACATTGGTCAGGCCGTTTCACTCG
BS10458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-PA | 1851 | CG1812-RA | 974..1851 | 894..17 | 4390 | 100 | Minus |
CG1812-PB | 1626 | CG1812-RB | 749..1626 | 894..17 | 4390 | 100 | Minus |
CG1812-PA | 1851 | CG1812-RA | 939..975 | 928..892 | 160 | 97.2 | Minus |
CG1812-PB | 1626 | CG1812-RB | 714..750 | 928..892 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 3229 | CG1812-RA | 1303..2215 | 928..17 | 4525 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20514353..20514814 | 478..17 | 2310 | 100 | Minus |
X | 23542271 | X | 20513831..20514193 | 837..475 | 1815 | 100 | Minus |
X | 23542271 | X | 20513660..20513752 | 928..837 | 400 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:49:57 has no hits.
BS10458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:40 Download gff for
BS10458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PB | 714..1626 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:42 Download gff for
BS10458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PB | 714..1626 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:39:55 Download gff for
BS10458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 1303..2221 | 8..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:52:11 Download gff for
BS10458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 1303..2221 | 8..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:52:11 Download gff for
BS10458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20513660..20513751 | 838..928 | 97 | -> | Minus |
X | 20513831..20514190 | 478..837 | 100 | -> | Minus |
X | 20514354..20514820 | 8..477 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:39:55 Download gff for
BS10458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20384687..20384778 | 838..928 | 97 | -> | Minus |
arm_X | 20384858..20385217 | 478..837 | 100 | -> | Minus |
arm_X | 20385381..20385847 | 8..477 | 99 | | Minus |
BS10458.5prime Sequence
919 bp (790 high quality bases) assembled on 2006-04-19
> BS10458.5prime
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAACA
GCTGCCACTGCCTACCAGCTACTACAACCGAATAAACAGGAGCACATGGG
GCACCTACTCAACGGAGTGGTGTCCCTGAAGGATCAGTCACTGCCACANG
GACCAACAACATGCGGGGC
BS10458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-PA | 1851 | CG1812-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
CG1812-PB | 1626 | CG1812-RB | 1..557 | 242..798 | 2785 | 100 | Plus |
CG1812-PA | 1851 | CG1812-RA | 820..895 | 834..909 | 361 | 98.6 | Plus |
CG1812-PB | 1626 | CG1812-RB | 595..670 | 834..909 | 361 | 98.6 | Plus |
CG1812-PA | 1851 | CG1812-RA | 781..821 | 796..836 | 205 | 100 | Plus |
CG1812-PB | 1626 | CG1812-RB | 556..596 | 796..836 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 3229 | CG1812-RA | 364..1270 | 16..919 | 4449 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20512900..20513627 | 195..919 | 3479 | 99.5 | Plus |
X | 23542271 | X | 20511907..20512088 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:59:03 has no hits.
BS10458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:41 Download gff for
BS10458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PA | 1..906 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:44 Download gff for
BS10458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-PA | 1..906 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:35 Download gff for
BS10458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 361..1270 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:03 Download gff for
BS10458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 361..1270 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:03 Download gff for
BS10458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20511904..20512087 | 9..196 | 97 | -> | Plus |
X | 20512902..20513627 | 197..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:35 Download gff for
BS10458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20382931..20383114 | 9..196 | 97 | -> | Plus |
arm_X | 20383929..20384654 | 197..919 | 99 | | Plus |
BS10458.complete Sequence
1883 bp assembled on 2007-11-30
GenBank Submission: FJ636672
> BS10458.complete
GAAGTTATCAGTCGACATGGCAGCGACGCCAGCGCCAGCAGTGACGCCGG
CAGCGACAGCAACGTCGGCTGCGGCCAAAATTCCTGTGAATCCCGTGTCC
CCCGAGGAGGAGACCCTTCTGCGGGGCCTCAACAAGCTGCGCAACGAGGA
GAAACTCACGGACGTCACTCTGATCGTCGAGGAGCACCGATTCAAGGCTC
ACCGCGTCGTCCTGGCAGCCAGCAGTGACTACTTTTGCGCCATGTTCGCC
GACTGTGCCATGATTGAGTCGCGTAAGGACGAGATAAATCTCTACGGTAT
TAAAGCCAGGGCCATGGGCTCGATCATTGACTACATATACACATCGATGC
TGGAACTGAACTACGATAACATCGAGGAGATCCTGGCGGCAGCCACGCAC
GTCCAGGTGCGCGAGGTGATTGACCGATGCACGATCTTTCTGGGCGCAAA
GATCGAGATGGAAAACTGCCTGGCCATTGCGGGAATGGCCGATATCTATG
GAATTATGGACTTATCCGAACGGGCCTACCGCTATATGTGCGCTCACTTT
GAGGAGTTCGCGACCACATCGGACTTTAAAGAAATGAAGGTGGACCAGCT
GCGCTTCATCCTCAGCAGCAACTATCCCATTGACGTGGCCGAGCAGGATC
TGGTGCGTCTGGTATGCAGCTTTGCGATCGAACAACAGCTGAATGAGAGC
GCTTTGGGGGATCTGCTGAGGCTGATCAAATGGCAACACATTAGCTATAA
GTCCGTGGACGAACTGAGGAACATGAACTGCTCGCTGGATAAGGGAAAAC
AGCTGCCACTGCCTACCAGCTACTACAACCGAATAAAACAGGAGCACATG
GGGCACCTACTCAACGGAGTGGTGTCCCTGAAGGATCAGTCACTGCCACA
GGGACCAACAAACATGCGGGGCATGGAGCTGTGTCTGCTGAAGATCGGGG
GCTTCGAGTGGAACGGCCTGACCAATGTAATAATGTGCTTTTCGCCAAAG
AAAATGAATTGGTATGAGTTGACCGCCATTCCGCACATCGATCAGTGCAA
CTTTGGCACGGCCGTACTGAACAACAAACTGTTCATCGTGGGCGGAGCGT
ACGATGTCTTTTTGAAGGAGTACATCCATCCCTTTGGCTTCTGCTACTGT
CCGCTAAGGAATACATGGATGACCATAGCACCCATTCAGCAGGATCGCTG
CCGTTTCTCGTTGAACGCAGTGGGCACTCAGCATCTGTATGCGGTGGGCG
GCATTCTGGACGATGATAACGAAGAAGCCCTGCGCATGATCTCCAACGTG
GAGCGCTACGATATCGCCAAGAATGTATGGACCTATATGCCTAGTCTGCA
GGAGAATCGCAGTCAGCATGCCGGCGTCGTTGTGGGCGATAAGCTTTACA
TCTCTGGTGGCGTCCACTTGGCCAACATACTGGCAAGCATGTGGGTATTC
GACACAAAGACGGAAGTCTGGCAGGAGCTGGCCTCGATGCCCACGCCCTG
TTGTGACCACGTTTTGGTGGCGGTGGATAATCGCATCTATGCCTGCGGCG
GATGGCACGAGAGTTTGACGGAATGGCGGGTTCTGGTGGAGCACATATAT
GCCTATGATATTGAGACTAACACGTGGAGCGTGGAGACCAAGATACCGGC
CCCCAAGTTCTACACCGGCGTGACCGCGATGGGCAGAACAATATTCTTTG
TGGGCGGACTGGACTCCACGGAGTCGATTGATCGGGCCAGTGCGGAAACA
ATGGCCTACGACTTGGATACCAAGGAATGGTGGCACGAAAAGGACTCGTG
GGACTCGCCCAACGATGTGTGGGAATCAACCTGCGTGGCCATCTATGTGC
CCAATTGTGATGCCTAAAAGCTTTCTAGACCAT
BS10458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 1851 | CG1812-PA | 1..1851 | 17..1867 | 9255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-RA | 3229 | CG1812-RA | 364..2215 | 16..1867 | 9260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20512900..20513752 | 195..1047 | 4265 | 100 | Plus |
X | 23542271 | X | 20514353..20514814 | 1406..1867 | 2310 | 100 | Plus |
X | 23542271 | X | 20513831..20514193 | 1047..1409 | 1815 | 100 | Plus |
X | 23542271 | X | 20511907..20512088 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:24:59 has no hits.
BS10458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:41 Download gff for
BS10458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 1..1851 | 17..1867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:15 Download gff for
BS10458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 358..2218 | 9..1876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:26 Download gff for
BS10458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 365..2213 | 17..1865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:01 Download gff for
BS10458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 362..2210 | 17..1865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:57 Download gff for
BS10458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1812-RA | 365..2213 | 17..1865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:57 Download gff for
BS10458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20513831..20514190 | 1047..1406 | 100 | -> | Plus |
X | 20511908..20512087 | 17..196 | 100 | -> | Plus |
X | 20512902..20513751 | 197..1046 | 100 | -> | Plus |
X | 20514354..20514812 | 1407..1865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:26 Download gff for
BS10458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20382935..20383114 | 17..196 | 100 | -> | Plus |
arm_X | 20383929..20384778 | 197..1046 | 100 | -> | Plus |
arm_X | 20384858..20385217 | 1047..1406 | 100 | -> | Plus |
arm_X | 20385381..20385839 | 1407..1865 | 100 | | Plus |
BS10458.pep Sequence
Translation from 16 to 1866
> BS10458.pep
MAATPAPAVTPAATATSAAAKIPVNPVSPEEETLLRGLNKLRNEEKLTDV
TLIVEEHRFKAHRVVLAASSDYFCAMFADCAMIESRKDEINLYGIKARAM
GSIIDYIYTSMLELNYDNIEEILAAATHVQVREVIDRCTIFLGAKIEMEN
CLAIAGMADIYGIMDLSERAYRYMCAHFEEFATTSDFKEMKVDQLRFILS
SNYPIDVAEQDLVRLVCSFAIEQQLNESALGDLLRLIKWQHISYKSVDEL
RNMNCSLDKGKQLPLPTSYYNRIKQEHMGHLLNGVVSLKDQSLPQGPTNM
RGMELCLLKIGGFEWNGLTNVIMCFSPKKMNWYELTAIPHIDQCNFGTAV
LNNKLFIVGGAYDVFLKEYIHPFGFCYCPLRNTWMTIAPIQQDRCRFSLN
AVGTQHLYAVGGILDDDNEEALRMISNVERYDIAKNVWTYMPSLQENRSQ
HAGVVVGDKLYISGGVHLANILASMWVFDTKTEVWQELASMPTPCCDHVL
VAVDNRIYACGGWHESLTEWRVLVEHIYAYDIETNTWSVETKIPAPKFYT
GVTAMGRTIFFVGGLDSTESIDRASAETMAYDLDTKEWWHEKDSWDSPND
VWESTCVAIYVPNCDA*
BS10458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1812-PA | 616 | CG1812-PA | 1..616 | 1..616 | 3277 | 100 | Plus |
kel-PA | 689 | CG7210-PA | 147..665 | 38..585 | 468 | 27.7 | Plus |
kel-PB | 1477 | CG7210-PB | 147..665 | 38..585 | 468 | 27.7 | Plus |
dbo-PB | 620 | CG6224-PB | 59..585 | 35..588 | 414 | 26.4 | Plus |
dbo-PA | 623 | CG6224-PA | 59..585 | 35..588 | 414 | 26.4 | Plus |