Clone Sequence Records
BS10462.3prime Sequence
949 bp (860 high quality bases) assembled on 2006-04-19
> BS10462.3prime
ATGGTCTAGAAAGCTTCTAGAATCCACGGAAGTCCTCATCGGCACTGTCA
TCACTGGCGGGCGTGGATGATCGTTTGCGGCTTTCTGGTTTTTCCTCTGG
CTGATCTGTTGCTTCCTCCTCAGCACTCGGCACAATTTCCTGAGCCTGCG
ATCGGTGGTGGAAGACAAAGGACACGCACTTGCAATCCATCCAGGCCTGG
GCGAGAATATTGTCAGGCAGGCCTCTGTTGTTGGAGCAATGGTACCATTG
TGACAAATGCGAGGTGCAGTCCGTGTCCTCGGGCGGTGGCTTCATTTGTA
TATTTTGAACGCAGCGCTTACACTTGAGCTTGTCGTGTGTGTCGGACAGA
ATGTTCGCATCAAATGTAAACAAGTCCTTCAGATCGTCGCGGGTGAAATG
CTTCTCGGCCGACTCGTTGTTGTCAATGATGGTGCTCGACAGGGATTTTT
TGTGCGTCTGTCGCTGCAGGATCTTCTCCTCGATGGAACCACTGGCAACG
AGGCGATATATGTAACAGGGCTTCTTTTGCCCGTCACGCCACACTCTGGC
CATTGCCTGCTCATCGTTGGCCGGATTCCAGTCTGGGTCAAACATGAACA
GGCGGTTGGCTCCAATCAAATTCAAGCCGCAGCCGCCAGCCTTGCTGCTC
AGCATGAAAAGGAAGCTGTCAGACTCCGGGTCATTGAATCGGTCAACAAC
CTTCGATCGCTTCTTGATGGACATGGTGCCATCAAGCCGGACAAATCCGT
ACTTTCGCTTCCTCGCGAGCTGCTCGAACAAGTCCAGGGTCTGTGTGTAA
TTGGAAATGAGAACCACCTTGTCGTTGCCCTCTGCACGTATTGCTGCCAG
CATGAAATCCAGGAGCATGAACTTGCACTTAGCTCTGGATTGAGATCCTT
TGGTTTGTATTACTAGGCAGCACATTTTGGGAGTTTTCGAATCCCTTTT
BS10462.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3736-PA | 2355 | okr-RA | 1496..2355 | 876..17 | 4300 | 100 | Minus |
| CG3736-PA | 2355 | okr-RA | 1421..1461 | 949..909 | 205 | 100 | Minus |
| CG3736-PA | 2355 | okr-RA | 1462..1495 | 909..876 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2878 | CG3736-RA | 1471..2405 | 949..17 | 4625 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2990661..2991066 | 494..898 | 1980 | 99.8 | Plus |
| 2L | 23513712 | 2L | 2990067..2990379 | 17..329 | 1565 | 100 | Plus |
| 2L | 23513712 | 2L | 2990435..2990599 | 329..493 | 825 | 100 | Plus |
| 2L | 23513712 | 2L | 2991124..2991176 | 898..949 | 215 | 98.1 | Plus |
Blast to na_te.dros performed 2015-02-09 02:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2246..2335 | 138..227 | 135 | 61.1 | Plus |
BS10462.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:48 Download gff for
BS10462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-PA | 1421..2355 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:55 Download gff for
BS10462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3736-PA | 1421..2355 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:46:48 Download gff for
BS10462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 1471..2410 | 11..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:21:04 Download gff for
BS10462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 1471..2410 | 11..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:21:04 Download gff for
BS10462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2990062..2990379 | 11..329 | 99 | <- | Plus |
| 2L | 2990436..2990599 | 330..493 | 100 | <- | Plus |
| 2L | 2990661..2991066 | 494..898 | 99 | <- | Plus |
| 2L | 2991125..2991176 | 899..949 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:46:48 Download gff for
BS10462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2990062..2990379 | 11..329 | 99 | <- | Plus |
| arm_2L | 2990436..2990599 | 330..493 | 100 | <- | Plus |
| arm_2L | 2990661..2991066 | 494..898 | 99 | <- | Plus |
| arm_2L | 2991125..2991176 | 899..949 | 98 | | Plus |
BS10462.5prime Sequence
916 bp (814 high quality bases) assembled on 2006-04-19
> BS10462.5prime
GAAGTTATCAGTCGACATGCGGCGCAGTCTGGCTCCCAGCCAACGTGGAC
CACTGCGTCCCGAGTCCCGTCACTCCTTCACGCCGCCACTGCTGAAGAAA
AACAAGCGATCCTGCCAGCAGGAACTGGAGCGAGAGCAAGAACTGGACAG
AAGACGACTGGGCGCCCTCCGAGATGCCAGCAACACATCAGAGCTCCCAC
TGCCTATTCGCTTCACGGCGAACAGCGAGTATGAGTTGGCCATTGCCAAG
GTTCTGGCACGGAAGTTCAAGGTGCCCATGGACAATTACGTACCGGATTA
CGGTGGTAAACGGGTCCTGGGCGTGCGGCGCTGCATTTCCCGACGACCCC
TACACGATCCGATGGCCTGCAACGCCTTGGTACTCTTCCATCCACCCGCC
TACACAGAACACGAGCGCATGGGCATGGATCCGACCAAGGTTCTGGTGCA
CGTCGTCGTCGATCCGCTGCTGAGCAACATATTGCGGCCGCACCAGCGCG
AGGGAGTGCGTTTCATGTACGAGTGTGTGGAGGGAAAGCGGGGCAACTTC
AATGGATGCATCATGGCCGACGAAATGGGTCTCGGGAAGACGCTGCAGTG
CGTAACGCTGGTCTGGACACTTCTAAGGCAGGGGCCCGAGTGCAAGCCGA
CGATCAACAAAGCCATTGTCGTGTCTCCATCATCGCTGGTTAAGAACTGG
GAGAAGGAGTTTACCAAGTGGCTTCACGGTCGACTCCTTTGCCTGCCCAT
GGAGGGCGGGACCAAGGAGAACACCATCCGAGCACTCGAGCAGTTCTCCA
TGACTTCTGCCCGGCTGGGGACACCTGTTCTGCTCATCAGCTACGAGACA
TTTCGCATCTACGCGGAGATCCTGTGCAAGTACGAGGTGGGAATGGTGAT
ATGCGACGAGGGACAT
BS10462.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3736-PA | 2355 | okr-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2878 | CG3736-RA | 51..950 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2991753..2992650 | 916..19 | 4490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:41:46 has no hits.
BS10462.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:49 Download gff for
BS10462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:56 Download gff for
BS10462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3736-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:51 Download gff for
BS10462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 42..950 | 5..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:42 Download gff for
BS10462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 42..950 | 5..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:42 Download gff for
BS10462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2991753..2992650 | 19..916 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:51 Download gff for
BS10462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2991753..2992650 | 19..916 | 100 | | Minus |
BS10462.complete Sequence
2387 bp assembled on 2007-11-30
GenBank Submission: FJ636675
> BS10462.complete
GAAGTTATCAGTCGACATGCGGCGCAGTCTGGCTCCCAGCCAACGTGGAC
CACTGCGTCCCGAGTCCCGTCACTCCTTCACGCCGCCACTGCTGAAGAAA
AACAAGCGATCCTGCCAGCAGGAACTGGAGCGAGAGCAAGAACTGGACAG
AAGACGACTGGGCGCCCTCCGAGATGCCAGCAACACATCAGAGCTCCCAC
TGCCTATTCGCTTCACGGCGAACAGCGAGTATGAGTTGGCCATTGCCAAG
GTTCTGGCACGGAAGTTCAAGGTGCCCATGGACAATTACGTACCGGATTA
CGGTGGTAAACGGGTCCTGGGCGTGCGGCGCTGCATTTCCCGACGACCCC
TACACGATCCGATGGCCTGCAACGCCTTGGTACTCTTCCATCCACCCGCC
TACACAGAACACGAGCGCATGGGCATGGATCCGACCAAGGTTCTGGTGCA
CGTCGTCGTCGATCCGCTGCTGAGCAACATATTGCGGCCGCACCAGCGCG
AGGGAGTGCGTTTCATGTACGAGTGTGTGGAGGGAAAGCGGGGCAACTTC
AATGGATGCATCATGGCCGACGAAATGGGTCTCGGGAAGACGCTGCAGTG
CGTAACGCTGGTCTGGACACTTCTAAGGCAGGGGCCCGAGTGCAAGCCGA
CGATCAACAAAGCCATTGTCGTGTCTCCATCATCGCTGGTTAAGAACTGG
GAGAAGGAGTTTACCAAGTGGCTTCACGGTCGACTCCTTTGCCTGCCCAT
GGAGGGCGGGACCAAGGAGAACACCATCCGAGCACTCGAGCAGTTCTCCA
TGACTTCTGCCCGGCTGGGGACACCTGTTCTGCTCATCAGCTACGAGACA
TTTCGCATCTACGCGGAGATCCTGTGCAAGTACGAGGTGGGAATGGTGAT
ATGCGACGAGGGACATCGCCTCAAGAACAGCGACAATCTGACGTATCAGG
CTCTCATGGGACTGAAGACAAAGCGACGGGTCTTGCTTTCCGGCACTCCC
ATCCAGAACGATCTTACTGAGTACTACAGCCTGGTGAACTTTGTAAACCC
GGAGATGCTGGGAACGGCGGCCGTGTTTAAGCGCAACTTCGAGAGCGCTA
TTCTGCGGGGCCAGAATACTGACTCCACGGAACAGGAGCGACAACGGGCC
ATAGAGAAGACACAGGAGCTGATAGGTCTGGTCGATCAGTGCATCATTCG
TCGCACTAATCAAATTCTAACCAAATATCTGCCGGTTAAGTTTGAAATGG
TTATCTGTGCGAAACTGACGGCGATTCAACTCGAGCTATACACGAATTTC
TTGAAGTCTGATCAAGTTCGACGTAGTTTGGCGGATTGCAATGAAAAGGC
TTCGCTTACGGCGCTGGCAGACATTACAACGCTTAAGAAGATTTGCAGTC
ATCCGGATCTCATATATGAGAAGCTCACTGCGCGGGAAAAGGGATTCGAA
AACTCCCAAAATGTGCTGCCTAGTAATTACAAACCAAAGGATCTCAATCC
AGAGCTAAGTGGCAAGTTCATGCTCCTGGATTTCATGCTGGCAGCAATAC
GTGCAGAGGGCAACGACAAGGTGGTTCTCATTTCCAATTACACACAGACC
CTGGACTTGTTCGAGCAGCTCGCGAGGAAGCGAAAGTACGGATTTGTCCG
GCTTGATGGCACCATGTCCATCAAGAAGCGATCGAAGGTTGTTGACCGAT
TCAATGACCCGGAGTCTGACAGCTTCCTTTTCATGCTGAGCAGCAAGGCT
GGCGGCTGCGGCTTGAATTTGATTGGAGCCAACCGCCTGTTCATGTTTGA
CCCAGACTGGAATCCGGCCAACGATGAGCAGGCAATGGCCAGAGTGTGGC
GTGACGGGCAAAAGAAGCCCTGTTACATATATCGCCTCGTTGCCAGTGGT
TCCATCGAGGAGAAGATCCTGCAGCGACAGACGCACAAAAAATCCCTGTC
GAGCACCATCATTGACAACAACGAGTCGGCCGAGAAGCATTTCACCCGCG
ACGATCTGAAGGACTTGTTTACATTTGATGCGAACATTCTGTCCGACACA
CACGACAAGCTCAAGTGTAAGCGCTGCGTTCAAAATATACAAATGAAGCC
ACCGCCCGAGGACACGGACTGCACCTCGCATTTGTCACAATGGTACCATT
GCTCCAACAACAGAGGCCTGCCTGACAATATTCTCGCCCAGGCCTGGATG
GATTGCAAGTGCGTGTCCTTTGTCTTCCACCACCGATCGCAGGCTCAGGA
AATTGTGCCGAGTGCTGAGGAGGAAGCAACAGATCAGCCAGAGGAAAAAC
CAGAAAGCCGCAAACGATCATCCACGCCCGCCAGTGATGACAGTGCCGAT
GAGGACTTCCGTGGATTCTAGAAGCTTTCTAGACCAT
BS10462.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2355 | CG3736-PA | 1..2355 | 17..2371 | 11775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2878 | CG3736-RA | 51..2405 | 17..2371 | 11775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2991335..2992650 | 1334..19 | 6580 | 100 | Minus |
| 2L | 23513712 | 2L | 2990661..2991066 | 1894..1489 | 2030 | 100 | Minus |
| 2L | 23513712 | 2L | 2990067..2990379 | 2371..2059 | 1565 | 100 | Minus |
| 2L | 23513712 | 2L | 2990435..2990599 | 2059..1895 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 2991124..2991279 | 1489..1334 | 780 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2246..2335 | 2250..2161 | 135 | 61.1 | Minus |
BS10462.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:45 Download gff for
BS10462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 1..2355 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:19 Download gff for
BS10462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 44..2412 | 5..2377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:30 Download gff for
BS10462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 51..2405 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:17 Download gff for
BS10462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 53..2407 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:21 Download gff for
BS10462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 51..2405 | 17..2371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:21 Download gff for
BS10462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2990067..2990379 | 2059..2371 | 100 | <- | Minus |
| 2L | 2990436..2990599 | 1895..2058 | 100 | <- | Minus |
| 2L | 2990661..2991066 | 1489..1894 | 100 | <- | Minus |
| 2L | 2991125..2991278 | 1335..1488 | 100 | <- | Minus |
| 2L | 2991335..2992651 | 17..1334 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:30 Download gff for
BS10462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2990067..2990379 | 2059..2371 | 100 | <- | Minus |
| arm_2L | 2990436..2990599 | 1895..2058 | 100 | <- | Minus |
| arm_2L | 2990661..2991066 | 1489..1894 | 100 | <- | Minus |
| arm_2L | 2991125..2991278 | 1335..1488 | 100 | <- | Minus |
| arm_2L | 2991335..2992651 | 17..1334 | 99 | | Minus |
BS10462.pep Sequence
Translation from 16 to 2370
> BS10462.pep
MRRSLAPSQRGPLRPESRHSFTPPLLKKNKRSCQQELEREQELDRRRLGA
LRDASNTSELPLPIRFTANSEYELAIAKVLARKFKVPMDNYVPDYGGKRV
LGVRRCISRRPLHDPMACNALVLFHPPAYTEHERMGMDPTKVLVHVVVDP
LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVW
TLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTK
ENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGH
RLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGT
AAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQI
LTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTAL
ADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNPELSGK
FMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTM
SIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP
ANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID
NNESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRCVQNIQMKPPPEDT
DCTSHLSQWYHCSNNRGLPDNILAQAWMDCKCVSFVFHHRSQAQEIVPSA
EEEATDQPEEKPESRKRSSTPASDDSADEDFRGF*
BS10462.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-PA | 784 | CG3736-PA | 1..784 | 1..784 | 4108 | 100 | Plus |
| Chd3-PA | 892 | CG9594-PA | 267..757 | 156..670 | 601 | 30.2 | Plus |
| Mi-2-PD | 1973 | CG8103-PD | 721..1225 | 156..681 | 590 | 29.3 | Plus |
| Mi-2-PC | 1982 | CG8103-PC | 730..1234 | 156..681 | 590 | 29.3 | Plus |
| Mi-2-PA | 1982 | CG8103-PA | 730..1234 | 156..681 | 590 | 29.3 | Plus |
