Clone BS10463 Report

Search the DGRC for BS10463

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG10702-RA
Protein status:BS10463.pep: full length peptide match
Sequenced Size:2873

Clone Sequence Records

BS10463.3prime Sequence

944 bp (834 high quality bases) assembled on 2006-04-19

> BS10463.3prime
ATGGTCTAGAAAGCTTTTACATGGGATAATCGTCCGCCTGGCTGTTGTTG
TTGTTTTGAAATCGAACTGTCTCAAAACCGTCGACAAGGATTTCGCGATC
CTCGGTTTGTTGTCGGTCCCGAAGCCACTGCTCCCGCACTGGCACATATC
GCCGGAGTCCCGGCAACTTTCTCCAACATCGCCGCTTGTAAAGAACCCAA
ACCAGCGATACACTGCACCCAAACAGGAAGCAGATCAGGAATATGCTAAT
GCCGCGGCCGTGTGACGCTGTGGCTGGCAAGTCTGTGATTTCTGGCGAAA
GATCCTTGGCCTCCCTGCTGTGAAACGCCTGTAGGCGGTCCTCGTCGCTG
CACAGGCTGATTGGCATGTAGGGCGTCATCACATCGCCGGCCAGGGAGTG
GACCCGCACAGCGCACTCGGTGAAAGTGATGTTTATCTGCTTCACGTACA
TGTAGCCGGCACTCTGGTGATCCATCCGCGTTACACACCCGACGTGGGTT
TGCGAGAAGTTGTTGCGAAAGTGGATTACGTAGTTGGTCACCAGGCCATT
GGGCTTCTTAGGCTCCTCGAAGCGCATAATGTACTTGTCCATTTCCGGAA
TATGGCAGGCATACAGTTGGGTGAGAAGATCGGCACCCATTGTATAGTTC
GTTCGTCCGTAGAGCGTTGTGTGGCTGCTGCATCCCAGTGGATTGCAGGC
TTGCAGCTGAAGCGCGTACAGGCGATAGCGATGCAGCGCCTTAAGCTCGT
ACTCCGTGGTGTTTCCCGGCAGCCGAAGCTGTGGAAGCGAGACCTCGGTA
TGTGCCAGTCGTCGGCACTGCTCGCGATCATCAAGGGTGCAGCGATATTG
TTCCCTCATGTCCGCAATGAAACGAGAGTCCTCAAACTGCTCGGCCTTCT
GGGCACAACAGTCGTCGTAGTCCTCGTACGCCATCCACCTGGGG

BS10463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-PB 2841 CG10702-RB 1914..2841 944..17 4640 100 Minus
CG10702-PA 2841 CG10702-RA 1914..2841 944..17 4640 100 Minus
CG10702-PC 2841 CG10702-RC 1914..2841 944..17 4640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-RD 4041 CG10702-RD 2644..3572 944..16 4645 100 Minus
CG10702-RC 3893 CG10702-RC 2936..3864 944..16 4645 100 Minus
CG10702-RA 3934 CG10702-RA 2977..3905 944..16 4645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19065301..19066229 16..944 4645 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:01:06 has no hits.

BS10463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:50 Download gff for BS10463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-PB 1914..2841 17..944 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:58 Download gff for BS10463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-PC 1914..2841 17..944 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:29 Download gff for BS10463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-RA 2977..3905 16..944 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:28 Download gff for BS10463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-RA 2977..3905 16..944 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:28 Download gff for BS10463.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19065301..19066229 16..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:29 Download gff for BS10463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19065301..19066229 16..944 100   Plus

BS10463.5prime Sequence

877 bp (795 high quality bases) assembled on 2006-04-19

> BS10463.5prime
GAAGTTATCAGTCGACATGCACTGCGGCAACATGCTGCTGGGCGTTGGCC
TCATGTTCCTGGCGCTATATGTCCCCTGCGCCGAATCCAAAAAGGAGCAC
GAGTGCACCAGCATCGACATCCGAAACGAGTGCAAGAACATGCATCTGCT
GGACAACTGCACCGTTGTCACCGGATACGTGATGATCACGCTGATCACTA
TCGAGCAGCGCTGCAATTTCTCGGAGTACTCGTACCCACTGCTCACCGAA
ATCACCGAGTTCATGATCTTCACCGACGTGCGCGGCCTGGTCAACATCAC
CGAAATGTTCCCGCACCTGACCGTCATTCGGGGTCGCCGGCTGTTCCTTA
ACTACGCGCTCGGAGTGACCAACATGCACGAGCTGGAACAGTTGGTATTT
CCCAAATTGGTGGCAATACAACGAGGACAAGTCTACATCGGCAGCTGCCC
CAAGCTCTGCAGCATCGGCCGTGTTAATTGGGATCTGCTGACTCTCACCA
GAGGCGAGAACAACATAATAATGGTGAATAAAAACTGCAGCACACCGGTT
TGCTCTGGATGCAGTTCCTCCCACTGCTGGTCGAATCATTACTGCCAAAG
ATCCATCAACGAAAATGTCGCCAATCCAAAGGCCAACATAAACGCCTGCC
ATGAGGAGTGCTTGGGCGGCTGCAAGAACAACTCATCATCCCCAGCTGAC
TGCAGCGTTTGCCGCGGACTCAGTGATGATGGTGTCTGCGTGAAGAGCTG
TCCGAAGGACAAGTACGTCATGGAGAACTATCAGCGCTGCTATACGAAGG
CCGAGTGTGTGCTAAAGCACGGCTATGTTATTTTCGGATCACAGTGCGTA
GCTTTCTGTCCCAGCGGCTACNAGACG

BS10463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-PB 2841 CG10702-RB 1..861 17..877 4261 99.7 Plus
CG10702-PA 2841 CG10702-RA 1..861 17..877 4261 99.7 Plus
CG10702-PC 2841 CG10702-RC 1..861 17..877 4261 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-RD 4041 CG10702-RD 729..1591 15..877 4289 99.8 Plus
CG10702-RC 3893 CG10702-RC 1021..1883 15..877 4289 99.8 Plus
CG10702-RA 3934 CG10702-RA 1062..1924 15..877 4289 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19068203..19068579 391..15 1885 100 Minus
2L 23513712 2L 19067782..19068026 633..389 1225 100 Minus
2L 23513712 2L 19067570..19067700 764..634 655 100 Minus
2L 23513712 2L 19067403..19067521 877..759 554 97.5 Minus
Blast to na_te.dros performed 2015-02-11 09:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 1196..1225 90..119 114 86.7 Plus

BS10463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:51 Download gff for BS10463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-PB 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:01:59 Download gff for BS10463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-PC 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:13 Download gff for BS10463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-RA 1062..1924 15..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:24 Download gff for BS10463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10702-RA 1062..1924 15..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:24 Download gff for BS10463.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19067403..19067517 763..877 98 <- Minus
2L 19067572..19067700 634..762 100 <- Minus
2L 19067782..19068023 392..633 100 <- Minus
2L 19068203..19068579 15..391 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:13 Download gff for BS10463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19067403..19067517 763..877 98 <- Minus
arm_2L 19067572..19067700 634..762 100 <- Minus
arm_2L 19067782..19068023 392..633 100 <- Minus
arm_2L 19068203..19068579 15..391 100   Minus

BS10463.complete Sequence

2873 bp assembled on 2009-12-07

GenBank Submission: KX801599

> BS10463.complete
GAAGTTATCAGTCGACATGCACTGCGGCAACATGCTGCTGGGCGTTGGCC
TCATGTTCCTGGCGCTATATGTCCCCTGCGCCGAATCCAAAAAGGAGCAC
GAGTGCACCAGCATCGACATCCGAAACGAGTGCAAGAACATGCATCTGCT
GGACAACTGCACCGTTGTCACCGGATACGTGATGATCACGCTGATCACTA
TCGAGCAGCGCTGCAATTTCTCGGAGTACTCGTACCCACTGCTCACCGAA
ATCACCGAGTTCATGATCTTCACCGACGTGCGCGGCCTGGTCAACATCAC
CGAAATGTTCCCGCACCTGACCGTCATTCGGGGTCGCCGGCTGTTCCTTA
ACTACGCGCTCGGAGTGACCAACATGCACGAGCTGGAACAGTTGGTATTT
CCCAAATTGGTGGCAATACAACGAGGACAAGTCTACATCGGCAGCTGCCC
CAAGCTCTGCAGCATCGGCCGTGTTAATTGGGATCTGCTGACTCTCACCA
GAGGCGAGAACAACATAATAATGGTGAATAAAAACTGCAGCACACCGGTT
TGCTCTGGATGCAGTTCCTCCCACTGCTGGTCGAATCATTACTGCCAAAG
ATCCATCAACGAAAATGTCGCCAATCCAAAGGCCAACATAAACGCCTGCC
ATGAGGAGTGCTTGGGCGGCTGCAAGAACAACTCATCATCCCCAGCTGAC
TGCAGCGTTTGCCGCGGACTCAGTGATGATGGTGTCTGCGTGAAGAGCTG
TCCGAAGGACAAGTACGTCATGGAGAACTATCAGCGCTGCTATACGAAGG
CCGAGTGTGTGCTAAAGCACGGCTATGTTATTTCCGGATCACAGTGCGTA
GCTTTCTGTCCCAGCGGCTACAAGACGAACAACCGGTCGGAGTGCGTGCT
CTGTAGCCCCGATGAGGCTTGTATCAGCTTCTGCACGCCGGAGTGGCCAG
GAAAAGCGTTCACCGTATACAATCTGGCTGATGCAGAGAATTTGCGTGGC
TGTCAGATCTTCAATGGCAGCCTGGTCATCACAATCCGCAACAAGGTGAA
CGAGACGCAGCTGTACCAGAGCTTCACTAGTATGCGCGAGGTTCGTGGGC
ATGTTAAAGTCTATCGTTCCTCCCAGCTAAGAAGCTTGCAATTCCTGAGA
AACCTAGAGCGCGTTCACGGTGATCCCCTAGAGAATCGCCACTACTCCTT
CATACTTTATGACAACAAGGAGCTGTCCGAGTTGTGGACACCTTCGCGGC
AACTGGAGTTCATGGAGGGCGGCATGTTCATGCATCGCAACAACAAACTG
TGCAACCGGAGGATGCGAGAATTCCAAAACGCTGTGACCCATGATAGAGC
CCTGGACTCCCTGCAGACCAACGACCAGGAGGTGCAGTGCAGCCCCTTGA
AATTGCAGCTATATGTGCAGAAACGAACCCATCGGTCTGTGAAGCTAAGC
TGGCTCAAGTCTCAAACAAGCCAGAAGATCGAGCTGATCCACCGACCTTT
ATTGCCGGGGAAACTATACCACGAAGAAAGTGAACTGGACGCGCCCATAT
GTACACGAATCAACTGGAAACGACGCCTGCTCTTCCCCGACGATCTGATC
GAAAATGGCACACACTATCTTTTCGACTTGGATGATCTTCAACCGGACAC
ACGGTATGTCGTCCTGTTGCGTACTTTCGGCAATGATGAGGCGCATGAAG
CGTATGAGGCACGCAGCGAATTGACCTACGTGCAGACGGAGCTGGACATA
CCAAAGCCTCCGTTGCTGGAGCTGGTCAAGAAGACGGATAGCTCGCTGAC
GGTTCAAATGGCCAGTCACGACCATGTTAGCTTTCTTCTGACGGTTTTCG
AATTAAGCGATGATCAGGATTATATAGAACAGAGGAACTACTGCCACCAG
CCGTCGTACGTGTGGCAGGACATGGACGGCCCCAGGTGGATGGCGTACGA
GGACTACGACGACTGTTGTGCCCAGAAGGCCGAGCAGTTTGAGGACTCTC
GTTTCATTGCGGACATGAGGGAACAATATCGCTGCACCCTTGATGATCGC
GAGCAGTGCCGACGACTGGCACATACCGAGGTCTCGCTTCCACAGCTTCG
GCTGCCGGGAAACACCACGGAGTACGAGCTTAAGGCGCTGCATCGCTATC
GCCTGTACGCGCTTCAGCTGCAAGCCTGCAATCCACTGGGATGCAGCAGC
CACACAACGCTCTACGGACGAACGAACTATACAATGGGTGCCGATCTTCT
CACCCAACTGTATGCCTGCCATATTCCGGAAATGGACAAGTACATTATGC
GCTTCGAGGAGCCTAAGAAGCCCAATGGCCTGGTGACCAACTACGTAATC
CACTTTCGCAACAACTTCTCGCAAACCCACGTCGGGTGTGTAACGCGGAT
GGATCACCAGAGTGCCGGCTACATGTACGTGAAGCAGATAAACATCACTT
TCACCGAGTGCGCTGTGCGGGTCCACTCCCTGGCCGGCGATGTGATGACG
CCCTACATGCCAATCAGCCTGTGCAGCGACGAGGACCGCCTACAGGCGTT
TCACAGCAGGGAGGCCAAGGATCTTTCGCCAGAAATCACAGACTTGCCAG
CCACAGCGTCACACGGCCGCGGCATTAGCATATTCCTGATCTGCTTCCTG
TTTGGGTGCAGTGTATCGCTGGTTTGGGTTCTTTACAAGCGGCGATGTTG
GAGAAAGTTGCCGGGACTCCGGCGATATGTGCCAGTGCGGGAGCAGTGGC
TTCGGGACCGACAACAAACCGAGGATCGCGAAATCCTTGTCGACGGTTTT
GAGACAGTTCGATTTCAAAACAACAACAACAGCCAGGCGGACGATTATCC
CATGTAAAAGCTTTCTAGACCAT

BS10463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-RD 2841 CG10702-PD 1..2841 17..2857 14205 100 Plus
CG10702-RC 2841 CG10702-PC 1..2841 17..2857 14205 100 Plus
CG10702-RA 2841 CG10702-PA 1..2841 17..2857 14205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-RD 4041 CG10702-RD 729..3572 15..2858 14220 100 Plus
CG10702-RC 3893 CG10702-RC 1021..3864 15..2858 14220 100 Plus
CG10702-RA 3934 CG10702-RA 1062..3905 15..2858 14220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19065301..19066741 2858..1418 7205 100 Minus
2L 23513712 2L 19068203..19068579 391..15 1885 100 Minus
2L 23513712 2L 19067164..19067521 1116..759 1775 99.7 Minus
2L 23513712 2L 19066801..19067105 1420..1116 1525 100 Minus
2L 23513712 2L 19067782..19068026 633..389 1225 100 Minus
2L 23513712 2L 19067570..19067700 764..634 655 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:14:08 has no hits.

BS10463.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:55 Download gff for BS10463.complete
Subject Subject Range Query Range Percent Splice Strand
CG10702-RC 998..3836 17..2855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:22 Download gff for BS10463.complete
Subject Subject Range Query Range Percent Splice Strand
CG10702-RA 1064..3902 17..2855 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:37 Download gff for BS10463.complete
Subject Subject Range Query Range Percent Splice Strand
CG10702-RC 998..3836 17..2855 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:51 Download gff for BS10463.complete
Subject Subject Range Query Range Percent Splice Strand
CG10702-RA 1064..3902 17..2855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:51 Download gff for BS10463.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19065304..19066738 1421..2855 100 <- Minus
2L 19066801..19067104 1117..1420 100 <- Minus
2L 19067164..19067517 763..1116 100 <- Minus
2L 19067572..19067700 634..762 100 <- Minus
2L 19067782..19068023 392..633 100 <- Minus
2L 19068203..19068577 17..391 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:22 Download gff for BS10463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19065304..19066738 1421..2855 100 <- Minus
arm_2L 19066801..19067104 1117..1420 100 <- Minus
arm_2L 19067164..19067517 763..1116 100 <- Minus
arm_2L 19067572..19067700 634..762 100 <- Minus
arm_2L 19067782..19068023 392..633 100 <- Minus
arm_2L 19068203..19068577 17..391 100   Minus

BS10463.pep Sequence

Translation from 16 to 2856

> BS10463.pep
MHCGNMLLGVGLMFLALYVPCAESKKEHECTSIDIRNECKNMHLLDNCTV
VTGYVMITLITIEQRCNFSEYSYPLLTEITEFMIFTDVRGLVNITEMFPH
LTVIRGRRLFLNYALGVTNMHELEQLVFPKLVAIQRGQVYIGSCPKLCSI
GRVNWDLLTLTRGENNIIMVNKNCSTPVCSGCSSSHCWSNHYCQRSINEN
VANPKANINACHEECLGGCKNNSSSPADCSVCRGLSDDGVCVKSCPKDKY
VMENYQRCYTKAECVLKHGYVISGSQCVAFCPSGYKTNNRSECVLCSPDE
ACISFCTPEWPGKAFTVYNLADAENLRGCQIFNGSLVITIRNKVNETQLY
QSFTSMREVRGHVKVYRSSQLRSLQFLRNLERVHGDPLENRHYSFILYDN
KELSELWTPSRQLEFMEGGMFMHRNNKLCNRRMREFQNAVTHDRALDSLQ
TNDQEVQCSPLKLQLYVQKRTHRSVKLSWLKSQTSQKIELIHRPLLPGKL
YHEESELDAPICTRINWKRRLLFPDDLIENGTHYLFDLDDLQPDTRYVVL
LRTFGNDEAHEAYEARSELTYVQTELDIPKPPLLELVKKTDSSLTVQMAS
HDHVSFLLTVFELSDDQDYIEQRNYCHQPSYVWQDMDGPRWMAYEDYDDC
CAQKAEQFEDSRFIADMREQYRCTLDDREQCRRLAHTEVSLPQLRLPGNT
TEYELKALHRYRLYALQLQACNPLGCSSHTTLYGRTNYTMGADLLTQLYA
CHIPEMDKYIMRFEEPKKPNGLVTNYVIHFRNNFSQTHVGCVTRMDHQSA
GYMYVKQINITFTECAVRVHSLAGDVMTPYMPISLCSDEDRLQAFHSREA
KDLSPEITDLPATASHGRGISIFLICFLFGCSVSLVWVLYKRRCWRKLPG
LRRYVPVREQWLRDRQQTEDREILVDGFETVRFQNNNNSQADDYPM*

BS10463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10702-PD 946 CG10702-PD 1..946 1..946 5120 100 Plus
CG10702-PC 946 CG10702-PC 1..946 1..946 5120 100 Plus
CG10702-PA 946 CG10702-PA 1..946 1..946 5120 100 Plus
CG10702-PB 946 CG10702-PB 1..946 1..946 5120 100 Plus
InR-PD 2144 CG18402-PD 333..770 24..429 528 30.8 Plus