Clone BS10465 Report

Search the DGRC for BS10465

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptnmo-RA
Protein status:BS10465.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10465.3prime Sequence

933 bp (745 high quality bases) assembled on 2006-04-19

> BS10465.3prime
ATGGTCTAGAAAGCTTTCATTGGCTGGCGAAACTCTTGAAGGCTGCACTC
TGTGGATTGATGCACAGCGGCACACGACCCGTTTGCAGCTGCTCGGCAAT
GAACTTGTGCATCTCCTCTTTGACCTGCTGCACGGATGTCAGCTTACGTT
CCCACAGATCATCGAAGGGCTGGCCGGCGGAGGGCTCAAAATCAGCCGTA
TACTGACGCATTCCGGCTGAGGTAGTGAAGCAGCATTTGCACATGCACGA
GTGATAGCGCAGACGCCCCTCATCCAGATACGGATGCGCCAGGGCATCTG
TCACGGAGATGCGCTTATCCGGATCGAAGACGAGCATCTGGCAGAGCAAG
TGCACCGCCTCGTGCGTGGCATGCGAGCTGAGTGTGTAGAGCACCGAGAA
GGATGGCGGCTTGGGCGCCCGGCGCAACATGTGGGTGCGGGCGCCCTCGC
AGGCGTGACGCATATCCTCCATGGTGGGCGTGCCAAGCAGCTCGGTAATC
AGCTCCAGCTGCTGCACAGGATTCTGTGCCTGGAAGAGGATGCGACGGCC
CAGCAGCTCGCCAAAAATGCAGCCCACCGACCATACATCCACCGCCGACG
AGTAGTGGCGAGCGCCCATCAGAATCTCCGGTGCGCGATAGTACTGGGTG
ACCACCTCTTGGGTCATGTGCTTGGCCTGATCCGGCTCCTCGACGCGGGC
CAATCCAAAGTCACAGATCTTGAGCACGCAATTCGAGTTGACCAGCAGAT
TGCCCGGCTTGATGTCGCGATGCAGGATGCGGGCCGAGTGCAGATATTTG
AGGCCGCGCAGGATCTGGTACAGGAACACTTTGATGTGGTCGGCGGACAG
GTGCTGTGGCGACACGATTATCTTGTGCAGATCCGATTGCAGCAGCTCCG
TTATCACATAGATTTCTTGAAAGAATCAAAATG

BS10465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7892-PA 1245 nmo-RA 337..1245 925..17 4520 99.8 Minus
CG7892-PB 1245 nmo-RB 337..1245 925..17 4520 99.8 Minus
CG7892-PC 1245 nmo-RC 337..1245 925..17 4520 99.8 Minus
CG7892-PE 1293 nmo-RE 337..1238 925..24 4485 99.8 Minus
CG7892-PF 1293 nmo-RF 337..1238 925..24 4485 99.8 Minus
CG7892-PG 1293 nmo-RG 337..1238 925..24 4485 99.8 Minus
CG7892-PD 603 nmo-RD 1..603 619..17 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RC 2624 CG7892-RC 875..1792 933..17 4535 99.7 Minus
nmo-RB 3131 CG7892-RB 1382..2299 933..17 4535 99.7 Minus
nmo-RA 5131 CG7892-RA 1046..1963 933..17 4535 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8046570..8047162 911..319 2950 99.8 Minus
3L 28110227 3L 8047245..8047447 320..118 1015 100 Minus
3L 28110227 3L 8047505..8047600 119..24 480 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:23:52 has no hits.

BS10465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:55 Download gff for BS10465.3prime
Subject Subject Range Query Range Percent Splice Strand
nmo-PB 328..1245 17..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:03 Download gff for BS10465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7892-PB 328..1245 17..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:00:20 Download gff for BS10465.3prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 1046..1963 17..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:33 Download gff for BS10465.3prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 1046..1963 17..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:33 Download gff for BS10465.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8045924..8045946 912..933 91 -> Minus
3L 8046570..8047161 320..911 99 -> Minus
3L 8047246..8047447 118..319 100 -> Minus
3L 8047507..8047604 17..117 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:00:20 Download gff for BS10465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8039024..8039046 912..933 91 -> Minus
arm_3L 8039670..8040261 320..911 99 -> Minus
arm_3L 8040346..8040547 118..319 100 -> Minus
arm_3L 8040607..8040704 17..117 96   Minus

BS10465.5prime Sequence

915 bp (809 high quality bases) assembled on 2006-04-19

> BS10465.5prime
GAAGTTATCAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTG
CTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCT
CCCTACTATCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCC
TATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCG
ATGGACGACGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTG
GTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAA
GCATGAAAATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGG
ATTTCTTTCAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTG
CACAAGATAATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGT
GTTCCTGTACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCA
TCCTGCATCGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGC
GTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCA
GGCCAAGCACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGG
AGATTCTGATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCG
GTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGC
ACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGC
CCACCATGGAGGATATGCGTCACGCCTGCGAGGGCGCCCGCACCCACATG
TTGCGCCGGGCGCCAAGCCGCCATCCTTCTCGGTGCTCTACACACTCAGC
TCGCATGCCACGCAC

BS10465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7892-PA 1245 nmo-RA 1..848 17..864 4240 100 Plus
CG7892-PB 1245 nmo-RB 1..848 17..864 4240 100 Plus
CG7892-PE 1293 nmo-RE 1..848 17..864 4240 100 Plus
CG7892-PC 1245 nmo-RC 1..848 17..864 4240 100 Plus
CG7892-PF 1293 nmo-RF 1..848 17..864 4240 100 Plus
CG7892-PG 1293 nmo-RG 1..848 17..864 4240 100 Plus
CG7892-PD 603 nmo-RD 1..206 659..864 1030 100 Plus
CG7892-PA 1245 nmo-RA 848..900 863..915 265 100 Plus
CG7892-PB 1245 nmo-RB 848..900 863..915 265 100 Plus
CG7892-PE 1293 nmo-RE 848..900 863..915 265 100 Plus
CG7892-PC 1245 nmo-RC 848..900 863..915 265 100 Plus
CG7892-PF 1293 nmo-RF 848..900 863..915 265 100 Plus
CG7892-PG 1293 nmo-RG 848..900 863..915 265 100 Plus
CG7892-PD 603 nmo-RD 206..258 863..915 265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RH 6235 CG7892-RH 719..1618 17..915 4475 99.9 Plus
nmo-RG 2250 CG7892-RG 548..1447 17..915 4475 99.9 Plus
nmo-RF 2757 CG7892-RF 1055..1954 17..915 4475 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8046570..8047119 367..915 2700 99.8 Plus
3L 28110227 3L 7980819..7980983 17..181 825 100 Plus
3L 28110227 3L 8039874..8040006 180..312 665 100 Plus
3L 28110227 3L 8045891..8045950 311..370 285 98.3 Plus
Blast to na_te.dros performed on 2015-02-12 19:28:19 has no hits.

BS10465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:56 Download gff for BS10465.5prime
Subject Subject Range Query Range Percent Splice Strand
nmo-PA 1..900 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:05 Download gff for BS10465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7892-PC 1..900 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:44:52 Download gff for BS10465.5prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RF 1050..1954 9..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:57 Download gff for BS10465.5prime
Subject Subject Range Query Range Percent Splice Strand
nmo-RF 1050..1954 9..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:57 Download gff for BS10465.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7980814..7980982 9..180 98 -> Plus
3L 8039875..8040004 181..310 100 -> Plus
3L 8045891..8045946 311..366 100 -> Plus
3L 8046570..8047119 367..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:44:52 Download gff for BS10465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7973914..7974082 9..180 98 -> Plus
arm_3L 8032975..8033104 181..310 100 -> Plus
arm_3L 8038991..8039046 311..366 100 -> Plus
arm_3L 8039670..8040219 367..915 99   Plus

BS10465.complete Sequence

1277 bp (1277 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636676

> BS10465.complete
GAAGTTATCAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTG
CTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCT
CCCTACTATCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCC
TATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCG
ATGGACGACGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTG
GTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAA
GCATGAAAATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGG
ATTTCTTTCAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTG
CACAAGATAATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGT
GTTCCTGTACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCA
TCCTGCATCGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGC
GTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCA
GGCCAAGCACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGG
AGATTCTGATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCG
GTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGC
ACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGC
CCACCATGGAGGATATGCGTCACGCCTGCGAGGGCGCCCGCACCCACATG
TTGCGCCGGGCGCCCAAGCCGCCATCCTTCTCGGTGCTCTACACACTCAG
CTCGCATGCCACGCACGAGGCGGTGCACTTGCTCTGCCAGATGCTCGTCT
TCGATCCGGATAAGCGCATCTCCGTGACAGATGCCCTGGCGCATCCGTAT
CTGGATGAGGGGCGTCTGCGCTATCACTCGTGCATGTGCAAATGCTGCTT
CACTACCTCAGCCGGAATGCGTCAGTATACGGCTGATTTTGAGCCCTCCG
CCGGCCAGCCCTTCGATGATCTGTGGGAACGTAAGCTGACATCCGTGCAG
CAGGTCAAAGAGGAGATGCACAAGTTCATTGCCGAGCAGCTGCAAACGGG
TCGTGTGCCGCTGTGCATCAATCCACAGAGTGCAGCCTTCAAGAGTTTCG
CCAGCCAATGAAAGCTTTCTAGACCAT

BS10465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RC 1245 CG7892-PC 1..1245 17..1261 6225 100 Plus
nmo-RB 1245 CG7892-PB 1..1245 17..1261 6225 100 Plus
nmo-RA 1245 CG7892-PA 1..1245 17..1261 6225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-RC 2624 CG7892-RC 548..1792 17..1261 6225 100 Plus
nmo-RB 3131 CG7892-RB 1055..2299 17..1261 6225 100 Plus
nmo-RA 5131 CG7892-RA 719..1963 17..1261 6225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8046570..8047162 367..959 2965 100 Plus
3L 28110227 3L 8047245..8047447 958..1160 1015 100 Plus
3L 28110227 3L 7980819..7980983 17..181 825 100 Plus
3L 28110227 3L 8039874..8040006 180..312 665 100 Plus
3L 28110227 3L 8047505..8047600 1159..1254 480 100 Plus
3L 28110227 3L 8045891..8045950 311..370 285 98.3 Plus
Blast to na_te.dros performed on 2014-11-28 07:55:07 has no hits.

BS10465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:03 Download gff for BS10465.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RC 1..1245 17..1261 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:41 Download gff for BS10465.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RC 545..1788 17..1260 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:44 Download gff for BS10465.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 719..1962 17..1260 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:03 Download gff for BS10465.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RC 540..1789 9..1261 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:52 Download gff for BS10465.complete
Subject Subject Range Query Range Percent Splice Strand
nmo-RA 719..1962 17..1260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:52 Download gff for BS10465.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8039875..8040004 181..310 100 -> Plus
3L 8045891..8045946 311..366 100 -> Plus
3L 7980819..7980982 17..180 100 -> Plus
3L 8046570..8047161 367..958 100 -> Plus
3L 8047246..8047447 959..1160 100 -> Plus
3L 8047507..8047603 1161..1260 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:44 Download gff for BS10465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8040607..8040703 1161..1260 96   Plus
arm_3L 7973919..7974082 17..180 100 -> Plus
arm_3L 8032975..8033104 181..310 100 -> Plus
arm_3L 8038991..8039046 311..366 100 -> Plus
arm_3L 8039670..8040261 367..958 100 -> Plus
arm_3L 8040346..8040547 959..1160 100 -> Plus

BS10465.pep Sequence

Translation from 16 to 1260

> BS10465.pep
MSVSMSLVQGGAAGGAPQGASAILAAAAPYYQPPAVPQDVQPDRPIGYGA
FGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFRELKMLCFFKHENVL
SALDILQPPHLDFFQEIYVITELLQSDLHKIIVSPQHLSADHIKVFLYQI
LRGLKYLHSARILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDQAKHMT
QEVVTQYYRAPEILMGARHYSSAVDVWSVGCIFGELLGRRILFQAQNPVQ
QLELITELLGTPTMEDMRHACEGARTHMLRRAPKPPSFSVLYTLSSHATH
EAVHLLCQMLVFDPDKRISVTDALAHPYLDEGRLRYHSCMCKCCFTTSAG
MRQYTADFEPSAGQPFDDLWERKLTSVQQVKEEMHKFIAEQLQTGRVPLC
INPQSAAFKSFASQ*

BS10465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
nmo-PC 414 CG7892-PC 1..414 1..414 2170 100 Plus
nmo-PB 414 CG7892-PB 1..414 1..414 2170 100 Plus
nmo-PA 414 CG7892-PA 1..414 1..414 2170 100 Plus
nmo-PH 430 CG7892-PH 1..413 1..413 2165 100 Plus
nmo-PG 430 CG7892-PG 1..413 1..413 2165 100 Plus