Clone Sequence Records
BS10465.3prime Sequence
933 bp (745 high quality bases) assembled on 2006-04-19
> BS10465.3prime
ATGGTCTAGAAAGCTTTCATTGGCTGGCGAAACTCTTGAAGGCTGCACTC
TGTGGATTGATGCACAGCGGCACACGACCCGTTTGCAGCTGCTCGGCAAT
GAACTTGTGCATCTCCTCTTTGACCTGCTGCACGGATGTCAGCTTACGTT
CCCACAGATCATCGAAGGGCTGGCCGGCGGAGGGCTCAAAATCAGCCGTA
TACTGACGCATTCCGGCTGAGGTAGTGAAGCAGCATTTGCACATGCACGA
GTGATAGCGCAGACGCCCCTCATCCAGATACGGATGCGCCAGGGCATCTG
TCACGGAGATGCGCTTATCCGGATCGAAGACGAGCATCTGGCAGAGCAAG
TGCACCGCCTCGTGCGTGGCATGCGAGCTGAGTGTGTAGAGCACCGAGAA
GGATGGCGGCTTGGGCGCCCGGCGCAACATGTGGGTGCGGGCGCCCTCGC
AGGCGTGACGCATATCCTCCATGGTGGGCGTGCCAAGCAGCTCGGTAATC
AGCTCCAGCTGCTGCACAGGATTCTGTGCCTGGAAGAGGATGCGACGGCC
CAGCAGCTCGCCAAAAATGCAGCCCACCGACCATACATCCACCGCCGACG
AGTAGTGGCGAGCGCCCATCAGAATCTCCGGTGCGCGATAGTACTGGGTG
ACCACCTCTTGGGTCATGTGCTTGGCCTGATCCGGCTCCTCGACGCGGGC
CAATCCAAAGTCACAGATCTTGAGCACGCAATTCGAGTTGACCAGCAGAT
TGCCCGGCTTGATGTCGCGATGCAGGATGCGGGCCGAGTGCAGATATTTG
AGGCCGCGCAGGATCTGGTACAGGAACACTTTGATGTGGTCGGCGGACAG
GTGCTGTGGCGACACGATTATCTTGTGCAGATCCGATTGCAGCAGCTCCG
TTATCACATAGATTTCTTGAAAGAATCAAAATG
BS10465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7892-PA | 1245 | nmo-RA | 337..1245 | 925..17 | 4520 | 99.8 | Minus |
CG7892-PB | 1245 | nmo-RB | 337..1245 | 925..17 | 4520 | 99.8 | Minus |
CG7892-PC | 1245 | nmo-RC | 337..1245 | 925..17 | 4520 | 99.8 | Minus |
CG7892-PE | 1293 | nmo-RE | 337..1238 | 925..24 | 4485 | 99.8 | Minus |
CG7892-PF | 1293 | nmo-RF | 337..1238 | 925..24 | 4485 | 99.8 | Minus |
CG7892-PG | 1293 | nmo-RG | 337..1238 | 925..24 | 4485 | 99.8 | Minus |
CG7892-PD | 603 | nmo-RD | 1..603 | 619..17 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmo-RC | 2624 | CG7892-RC | 875..1792 | 933..17 | 4535 | 99.7 | Minus |
nmo-RB | 3131 | CG7892-RB | 1382..2299 | 933..17 | 4535 | 99.7 | Minus |
nmo-RA | 5131 | CG7892-RA | 1046..1963 | 933..17 | 4535 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8046570..8047162 | 911..319 | 2950 | 99.8 | Minus |
3L | 28110227 | 3L | 8047245..8047447 | 320..118 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 8047505..8047600 | 119..24 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:23:52 has no hits.
BS10465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:55 Download gff for
BS10465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-PB | 328..1245 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:03 Download gff for
BS10465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7892-PB | 328..1245 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:00:20 Download gff for
BS10465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RA | 1046..1963 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:33 Download gff for
BS10465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RA | 1046..1963 | 17..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:33 Download gff for
BS10465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8045924..8045946 | 912..933 | 91 | -> | Minus |
3L | 8046570..8047161 | 320..911 | 99 | -> | Minus |
3L | 8047246..8047447 | 118..319 | 100 | -> | Minus |
3L | 8047507..8047604 | 17..117 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:00:20 Download gff for
BS10465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8039024..8039046 | 912..933 | 91 | -> | Minus |
arm_3L | 8039670..8040261 | 320..911 | 99 | -> | Minus |
arm_3L | 8040346..8040547 | 118..319 | 100 | -> | Minus |
arm_3L | 8040607..8040704 | 17..117 | 96 | | Minus |
BS10465.5prime Sequence
915 bp (809 high quality bases) assembled on 2006-04-19
> BS10465.5prime
GAAGTTATCAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTG
CTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCT
CCCTACTATCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCC
TATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCG
ATGGACGACGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTG
GTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAA
GCATGAAAATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGG
ATTTCTTTCAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTG
CACAAGATAATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGT
GTTCCTGTACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCA
TCCTGCATCGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGC
GTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCA
GGCCAAGCACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGG
AGATTCTGATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCG
GTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGC
ACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGC
CCACCATGGAGGATATGCGTCACGCCTGCGAGGGCGCCCGCACCCACATG
TTGCGCCGGGCGCCAAGCCGCCATCCTTCTCGGTGCTCTACACACTCAGC
TCGCATGCCACGCAC
BS10465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7892-PA | 1245 | nmo-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
CG7892-PB | 1245 | nmo-RB | 1..848 | 17..864 | 4240 | 100 | Plus |
CG7892-PE | 1293 | nmo-RE | 1..848 | 17..864 | 4240 | 100 | Plus |
CG7892-PC | 1245 | nmo-RC | 1..848 | 17..864 | 4240 | 100 | Plus |
CG7892-PF | 1293 | nmo-RF | 1..848 | 17..864 | 4240 | 100 | Plus |
CG7892-PG | 1293 | nmo-RG | 1..848 | 17..864 | 4240 | 100 | Plus |
CG7892-PD | 603 | nmo-RD | 1..206 | 659..864 | 1030 | 100 | Plus |
CG7892-PA | 1245 | nmo-RA | 848..900 | 863..915 | 265 | 100 | Plus |
CG7892-PB | 1245 | nmo-RB | 848..900 | 863..915 | 265 | 100 | Plus |
CG7892-PE | 1293 | nmo-RE | 848..900 | 863..915 | 265 | 100 | Plus |
CG7892-PC | 1245 | nmo-RC | 848..900 | 863..915 | 265 | 100 | Plus |
CG7892-PF | 1293 | nmo-RF | 848..900 | 863..915 | 265 | 100 | Plus |
CG7892-PG | 1293 | nmo-RG | 848..900 | 863..915 | 265 | 100 | Plus |
CG7892-PD | 603 | nmo-RD | 206..258 | 863..915 | 265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmo-RH | 6235 | CG7892-RH | 719..1618 | 17..915 | 4475 | 99.9 | Plus |
nmo-RG | 2250 | CG7892-RG | 548..1447 | 17..915 | 4475 | 99.9 | Plus |
nmo-RF | 2757 | CG7892-RF | 1055..1954 | 17..915 | 4475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8046570..8047119 | 367..915 | 2700 | 99.8 | Plus |
3L | 28110227 | 3L | 7980819..7980983 | 17..181 | 825 | 100 | Plus |
3L | 28110227 | 3L | 8039874..8040006 | 180..312 | 665 | 100 | Plus |
3L | 28110227 | 3L | 8045891..8045950 | 311..370 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:28:19 has no hits.
BS10465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:56 Download gff for
BS10465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-PA | 1..900 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:05 Download gff for
BS10465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7892-PC | 1..900 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:44:52 Download gff for
BS10465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RF | 1050..1954 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:57 Download gff for
BS10465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RF | 1050..1954 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:57 Download gff for
BS10465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7980814..7980982 | 9..180 | 98 | -> | Plus |
3L | 8039875..8040004 | 181..310 | 100 | -> | Plus |
3L | 8045891..8045946 | 311..366 | 100 | -> | Plus |
3L | 8046570..8047119 | 367..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:44:52 Download gff for
BS10465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7973914..7974082 | 9..180 | 98 | -> | Plus |
arm_3L | 8032975..8033104 | 181..310 | 100 | -> | Plus |
arm_3L | 8038991..8039046 | 311..366 | 100 | -> | Plus |
arm_3L | 8039670..8040219 | 367..915 | 99 | | Plus |
BS10465.complete Sequence
1277 bp (1277 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636676
> BS10465.complete
GAAGTTATCAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTG
CTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCT
CCCTACTATCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCC
TATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCG
ATGGACGACGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTG
GTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAA
GCATGAAAATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGG
ATTTCTTTCAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTG
CACAAGATAATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGT
GTTCCTGTACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCA
TCCTGCATCGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGC
GTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCA
GGCCAAGCACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGG
AGATTCTGATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCG
GTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGC
ACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGC
CCACCATGGAGGATATGCGTCACGCCTGCGAGGGCGCCCGCACCCACATG
TTGCGCCGGGCGCCCAAGCCGCCATCCTTCTCGGTGCTCTACACACTCAG
CTCGCATGCCACGCACGAGGCGGTGCACTTGCTCTGCCAGATGCTCGTCT
TCGATCCGGATAAGCGCATCTCCGTGACAGATGCCCTGGCGCATCCGTAT
CTGGATGAGGGGCGTCTGCGCTATCACTCGTGCATGTGCAAATGCTGCTT
CACTACCTCAGCCGGAATGCGTCAGTATACGGCTGATTTTGAGCCCTCCG
CCGGCCAGCCCTTCGATGATCTGTGGGAACGTAAGCTGACATCCGTGCAG
CAGGTCAAAGAGGAGATGCACAAGTTCATTGCCGAGCAGCTGCAAACGGG
TCGTGTGCCGCTGTGCATCAATCCACAGAGTGCAGCCTTCAAGAGTTTCG
CCAGCCAATGAAAGCTTTCTAGACCAT
BS10465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmo-RC | 1245 | CG7892-PC | 1..1245 | 17..1261 | 6225 | 100 | Plus |
nmo-RB | 1245 | CG7892-PB | 1..1245 | 17..1261 | 6225 | 100 | Plus |
nmo-RA | 1245 | CG7892-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmo-RC | 2624 | CG7892-RC | 548..1792 | 17..1261 | 6225 | 100 | Plus |
nmo-RB | 3131 | CG7892-RB | 1055..2299 | 17..1261 | 6225 | 100 | Plus |
nmo-RA | 5131 | CG7892-RA | 719..1963 | 17..1261 | 6225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8046570..8047162 | 367..959 | 2965 | 100 | Plus |
3L | 28110227 | 3L | 8047245..8047447 | 958..1160 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 7980819..7980983 | 17..181 | 825 | 100 | Plus |
3L | 28110227 | 3L | 8039874..8040006 | 180..312 | 665 | 100 | Plus |
3L | 28110227 | 3L | 8047505..8047600 | 1159..1254 | 480 | 100 | Plus |
3L | 28110227 | 3L | 8045891..8045950 | 311..370 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:55:07 has no hits.
BS10465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:03 Download gff for
BS10465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RC | 1..1245 | 17..1261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:41 Download gff for
BS10465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RC | 545..1788 | 17..1260 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:44 Download gff for
BS10465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RA | 719..1962 | 17..1260 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:03 Download gff for
BS10465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RC | 540..1789 | 9..1261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:52 Download gff for
BS10465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmo-RA | 719..1962 | 17..1260 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:52 Download gff for
BS10465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8039875..8040004 | 181..310 | 100 | -> | Plus |
3L | 8045891..8045946 | 311..366 | 100 | -> | Plus |
3L | 7980819..7980982 | 17..180 | 100 | -> | Plus |
3L | 8046570..8047161 | 367..958 | 100 | -> | Plus |
3L | 8047246..8047447 | 959..1160 | 100 | -> | Plus |
3L | 8047507..8047603 | 1161..1260 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:44 Download gff for
BS10465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8040607..8040703 | 1161..1260 | 96 | | Plus |
arm_3L | 7973919..7974082 | 17..180 | 100 | -> | Plus |
arm_3L | 8032975..8033104 | 181..310 | 100 | -> | Plus |
arm_3L | 8038991..8039046 | 311..366 | 100 | -> | Plus |
arm_3L | 8039670..8040261 | 367..958 | 100 | -> | Plus |
arm_3L | 8040346..8040547 | 959..1160 | 100 | -> | Plus |
BS10465.pep Sequence
Translation from 16 to 1260
> BS10465.pep
MSVSMSLVQGGAAGGAPQGASAILAAAAPYYQPPAVPQDVQPDRPIGYGA
FGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFRELKMLCFFKHENVL
SALDILQPPHLDFFQEIYVITELLQSDLHKIIVSPQHLSADHIKVFLYQI
LRGLKYLHSARILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDQAKHMT
QEVVTQYYRAPEILMGARHYSSAVDVWSVGCIFGELLGRRILFQAQNPVQ
QLELITELLGTPTMEDMRHACEGARTHMLRRAPKPPSFSVLYTLSSHATH
EAVHLLCQMLVFDPDKRISVTDALAHPYLDEGRLRYHSCMCKCCFTTSAG
MRQYTADFEPSAGQPFDDLWERKLTSVQQVKEEMHKFIAEQLQTGRVPLC
INPQSAAFKSFASQ*
BS10465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmo-PC | 414 | CG7892-PC | 1..414 | 1..414 | 2170 | 100 | Plus |
nmo-PB | 414 | CG7892-PB | 1..414 | 1..414 | 2170 | 100 | Plus |
nmo-PA | 414 | CG7892-PA | 1..414 | 1..414 | 2170 | 100 | Plus |
nmo-PH | 430 | CG7892-PH | 1..413 | 1..413 | 2165 | 100 | Plus |
nmo-PG | 430 | CG7892-PG | 1..413 | 1..413 | 2165 | 100 | Plus |