Clone Sequence Records
BS10468.complete Sequence
2054 bp assembled on 2009-12-07
GenBank Submission: KX803740
> BS10468.complete
GAAGTTATCAGTCGACATGTCCGCGAAGCCAAGTGCCAATTCGGAGGACA
TCCTTCTGGCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCATGACAAC
GCACAGATTGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATCCGAATT
GGCACTGGTTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCCAGCCCC
AGGTGGAAGCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGCGACAGC
GGAAGCATAATACTAGTGTCCGATGATTCCTCAGCTACGGCGTGCAGCTT
CCTTCACTCGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAACTGCGCA
AGGAGTTCACCGAGGACTCCTCATACATCGATCTCTCACTTGATTCGGGC
AGCAGCAATCCTAGTGCCATTGAAACCGACATGAAGACACACAAACTGGG
CGCGAAGCGCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCAAAAAGA
TTTCTTACCAGAATCTGAACGAGATGAACATCTCCTCGAATCAACCCGTG
GTGACGCGCAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCAGTTTGA
CTACTCCTCCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACTCCGACG
AGGTGTCACTGGATGCCGACGACGATGAGTATGAGGGAGAAGATTTCGAT
CAGCTCAAGTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACACCAGCTT
AGCCTTCAGCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACACCTCCGA
TGGTCTATGTCGAATTGGGCGGCAAAATCGTGATCATTAGGGATAAACCA
CAGCCCAATATCGTTCTGGAAGACGATAAGGAACTCAAGACGCAGATGCA
CAAGTTTTTGGGTCTGATTCCATCACGTCGCAAGCTCTTCGATCCGTCGG
AATACAATATGGATCGGGGGGATATTGAGATGGATGTGTACGTACCGACC
AGTCTTGTTACCAATCCATCACCTAGGTCCTCACCAAGCCCAGTTACTCC
ATCGGCCAGGTCACGAATATGGCAGGAAACAACGCCGACATCCATTTGCT
CCAACTTGAATTTATCGCATACCTACACACCGACCGTGAATGAGCTCCAG
ACTAAGCACATGGATGACTCTATAATCCAGGTGAATTTGGACTGCTTTCA
GAAGAAAACACCAGACTCTGTCAAGGAGCCCATTGATCTAAGCGAGCTTC
CCAGCCAAAAGCAACTAGCCACCAACTGCCGCCGCCACAAGAGCTGTGTA
GCCCGCCTGGAGCGGCACCCACATTTCTACGGTTTCGTCCAGTCGCTCAG
ACCGTCAGTCTCGCTCAACATGTGCCATCCGCTGGCCCTCACCTTCCGGC
GGACCAATTTCCAGCAATCTAAGGTGGCACTGGCCAAGGTTCTGTTCAAC
ATGTTCAATCACGCGGTCTTCCACTGTGGCCTGCAGGTGCCCATTGTTTG
GAAGCACGCAATGAAGAAGCGCTGGAAATGCGAGCTTGGCTTCGACGCCT
CCGGCAGGCGCACAGCACAGATCCTGCTTCTGCACAGCATAGACACTGCG
GCCGAGCTTATCTATCTCCTGCTGCACGAGATGTGCCATGTGGCGGCTTT
CCTGTTCAACCGGGAGTTGGGTCACGGCGACAACTGCCGCAGATGGACCT
ACCAGGCGAAGATGGCCTTTCCGGAGGTGCCCGCCCTCATGGAGTGCATA
GCTAGCTTCATGTATACGTGCAGCATGTGCAGCCGTTCCTCCTACGGCTT
GGCCGACTTGAAATCGTACAACATACGCTGCTACTACTGCCAGTTCGAGG
TGAGCGTGAAGCCCGTTAGCAAGGCGAACATGCACGAGGGCGCCCGTTCC
GATCGGACGATGACACCGTTCAAGTGTTTCATCCGTGACAAGTATTTGAA
GCTGGGCGCGGAGGGGGGCGTCACACACTCCTCGAAGATGGCGCTACTCA
ACGAAATGTTCGCGAAGATGACAGCCGCCACGGAATAGAAGCTTTCTAGA
CCAT
BS10468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 2469 | CG2694-PD | 443..2469 | 12..2038 | 10120 | 100 | Plus |
CG2694-RA | 2478 | CG2694-PA | 452..2478 | 12..2038 | 10120 | 100 | Plus |
CG2694-RB | 2022 | CG2694-PB | 1..2022 | 17..2038 | 10110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 3066 | CG2694-RD | 494..2520 | 12..2038 | 10120 | 100 | Plus |
CG2694-RB | 3152 | CG2694-RB | 580..2606 | 12..2038 | 10120 | 100 | Plus |
CG2694-RA | 3075 | CG2694-RA | 503..2529 | 12..2038 | 10120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2715514..2716706 | 504..1696 | 5965 | 100 | Plus |
X | 23542271 | X | 2714885..2715280 | 12..407 | 1965 | 99.7 | Plus |
X | 23542271 | X | 2716765..2717108 | 1695..2038 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 6758086..6758870 | 2004..1223 | 1475 | 79.5 | Minus |
X | 23542271 | X | 2715338..2715433 | 408..503 | 480 | 100 | Plus |
2L | 23513712 | 2L | 6759133..6759281 | 945..797 | 325 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:25:42 has no hits.
BS10468.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:54 Download gff for
BS10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RC | 165..2186 | 17..2038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:00 Download gff for
BS10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 508..2529 | 17..2038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:21 Download gff for
BS10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RC | 165..2186 | 17..2038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:12 Download gff for
BS10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 508..2529 | 17..2038 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:12 Download gff for
BS10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2716766..2717108 | 1696..2038 | 100 | | Plus |
X | 2714890..2715280 | 17..407 | 100 | -> | Plus |
X | 2715338..2715433 | 408..503 | 100 | -> | Plus |
X | 2715514..2716705 | 504..1695 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:00 Download gff for
BS10468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2608923..2609313 | 17..407 | 100 | -> | Plus |
arm_X | 2609371..2609466 | 408..503 | 100 | -> | Plus |
arm_X | 2609547..2610738 | 504..1695 | 100 | -> | Plus |
arm_X | 2610799..2611141 | 1696..2038 | 100 | | Plus |
BS10468.3prime Sequence
914 bp (848 high quality bases) assembled on 2006-04-19
> BS10468.3prime
ATGGTCTAGAAAGCTTCTATTCCGTGGCGGCTGTCATCTTCGCGAACATT
TCGTTGAGTAGCGCCATCTTCGAGGAGTGTGTGACGCCCCCCTCCGCGCC
CAGCTTCAAATACTTGTCACGGATGAAACACTTGAACGGTGTCATCGTCC
GATCGGAACGGGCGCCCTCGTGCATGTTCGCCTTGCTAACGGGCTTCACG
CTCACCTCGAACTGGCAGTAGTAGCAGCGTATGTTGTACGATTTCAAGTC
GGCCAAGCCGTAGGAGGAACGGCTGCACATGCTGCACGTATACATGAAGC
TAGCTATGCACTCCATGAGGGCGGGCACCTCCGGAAAGGCCATCTTCGCC
TGGTAGGTCCATCTGCGGCAGTTGTCGCCGTGACCCAACTCCCGGTTGAA
CAGGAAAGCCGCCACATGGCACATCTCGTGCAGCAGGAGATAGATAAGCT
CGGCCGCAGTGTCTATGCTGTGCAGAAGCAGGATCTGTGCTGTGCGCCTG
CCGGAGGCGTCGAAGCCAAGCTCGCATTTCCAGCGCTTCTTCATTGCGTG
CTTCCAAACAATGGGCACCTGCAGGCCACAGTGGAAGACCGCGTGATTGA
ACATGTTGAACAGAACCTTGGCCAGTGCCACCTTAGATTGCTGGAAATTG
GTCCGCCGGAAGGTGAGGGCCAGCGGATGGCACATGTTGAGCGAGACTGA
CGGTCTGAGCGACTGGACGAAACCGTAGAAATGTGGGTGCCGCTCCAGGC
GGGCTACACAGCTCTTGTGGCGGCGGCAGTTGGTGGCTAGTTGCTTTTGG
CTGGGAAGCTCGCTTAGATCAATGGGCTCCTTGACAGAGTCTGGTGTTTT
CTTTCTGAAGCAGTCCAAATTCACCTGGATTATAGAGTCATCCATGTGCT
TAGTCTGGAGCTCA
BS10468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-PA | 2478 | CG2694-RA | 1642..2478 | 853..17 | 4185 | 100 | Minus |
CG2694-PB | 2022 | CG2694-RB | 1186..2022 | 853..17 | 4185 | 100 | Minus |
CG2694-PC | 2022 | CG2694-RC | 1186..2022 | 853..17 | 4185 | 100 | Minus |
CG11322-PA | 1479 | CG11322-RA | 859..951 | 634..542 | 315 | 93.5 | Minus |
CG11322-PA | 1479 | CG11322-RA | 1056..1155 | 437..338 | 300 | 92 | Minus |
CG2694-PA | 2478 | CG2694-RA | 1581..1637 | 914..858 | 285 | 100 | Minus |
CG2694-PB | 2022 | CG2694-RB | 1125..1181 | 914..858 | 285 | 100 | Minus |
CG2694-PC | 2022 | CG2694-RC | 1125..1181 | 914..858 | 285 | 100 | Minus |
CG11322-PA | 1479 | CG11322-RA | 1270..1302 | 226..194 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 3066 | CG2694-RD | 1623..2520 | 914..17 | 4445 | 99.8 | Minus |
CG2694-RB | 3152 | CG2694-RB | 1709..2606 | 914..17 | 4445 | 99.8 | Minus |
CG2694-RA | 3075 | CG2694-RA | 1632..2529 | 914..17 | 4445 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2716151..2716706 | 914..359 | 2720 | 99.3 | Minus |
X | 23542271 | X | 2716765..2717108 | 360..17 | 1720 | 100 | Minus |
2L | 23513712 | 2L | 6758086..6758870 | 51..832 | 1475 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 17:21:30 has no hits.
BS10468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:58 Download gff for
BS10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PB | 1126..2022 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:09 Download gff for
BS10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PB | 1126..2022 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:31:36 Download gff for
BS10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 1633..2529 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:29:13 Download gff for
BS10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 1633..2529 | 17..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:29:13 Download gff for
BS10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2716152..2716705 | 360..913 | 99 | -> | Minus |
X | 2716766..2717108 | 17..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:31:36 Download gff for
BS10468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2610185..2610738 | 360..913 | 99 | -> | Minus |
arm_X | 2610799..2611141 | 17..359 | 100 | | Minus |
BS10468.5prime Sequence
820 bp (757 high quality bases) assembled on 2006-04-19
> BS10468.5prime
GAAGTTATCAGTCGACATGTCCGCGAAGCCAAGTGCCAATTCGGAGGACA
TCCTTCTGGCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCATGACAAC
GCACAGATTGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATCCGAATT
GGCACTGGTTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCCAGCCCC
AGGTGGAAGCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGCGACAGC
GGAAGCATAATACTAGTGTCCGATGATTCCTCAGCTACGGCGTGCAGCTT
CCTTCACTCGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAACTGCGCA
AGGAGTTCACCGAGGACTCCTCATACATCGATCTCTCACTTGATTCGGGC
AGCAGCAATCCTAGTGCCATTGAAACCGACATGAAGACACACAAACTGGG
CGCGAAGCGCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCAAAAAGA
TTTCTTACCAGAATCTGAACGAGATGAACATCTCCTCGAATCAACCCGTG
GTGACGCGCAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCAGTTTGA
CTACTCCTCCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACTCCGACG
AGGTGTCACTGGATGCCGACGACGATGAGTATGAGGGAGAAGATTTCGAT
CAGCTCAAGTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACACCAGCTT
AGCCTTCAGCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACACCTCCGA
TGGTCTATGTCGAATTGGGC
BS10468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-PA | 2478 | CG2694-RA | 457..1260 | 17..820 | 4020 | 100 | Plus |
CG2694-PB | 2022 | CG2694-RB | 1..804 | 17..820 | 4020 | 100 | Plus |
CG2694-PC | 2022 | CG2694-RC | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-RD | 3066 | CG2694-RD | 494..1302 | 12..820 | 4030 | 99.9 | Plus |
CG2694-RB | 3152 | CG2694-RB | 580..1388 | 12..820 | 4030 | 99.9 | Plus |
CG2694-RA | 3075 | CG2694-RA | 503..1311 | 12..820 | 4030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2714885..2715280 | 12..407 | 1965 | 99.7 | Plus |
X | 23542271 | X | 2715514..2715830 | 504..820 | 1585 | 100 | Plus |
X | 23542271 | X | 2715338..2715433 | 408..503 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:40:03 has no hits.
BS10468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:40:59 Download gff for
BS10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PC | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:11 Download gff for
BS10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-PC | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:18 Download gff for
BS10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 496..1311 | 5..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:23:53 Download gff for
BS10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2694-RA | 496..1311 | 5..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:23:53 Download gff for
BS10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2714878..2715280 | 5..407 | 99 | -> | Plus |
X | 2715338..2715433 | 408..503 | 100 | -> | Plus |
X | 2715514..2715830 | 504..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:18 Download gff for
BS10468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2608911..2609313 | 5..407 | 99 | -> | Plus |
arm_X | 2609371..2609466 | 408..503 | 100 | -> | Plus |
arm_X | 2609547..2609863 | 504..820 | 100 | | Plus |
BS10468.pep Sequence
Translation from 16 to 2037
> BS10468.pep
MSAKPSANSEDILLAGLLQDWKLEDHDNAQIGCDPAPMPASQSELALVHL
KLPCKTPQSQPQVEAHQNASVATVNSDSGSIILVSDDSSATACSFLHSSE
LCNSSDFEELRKEFTEDSSYIDLSLDSGSSNPSAIETDMKTHKLGAKRRS
PQTKGDVLAKKISYQNLNEMNISSNQPVVTRSGRVVVSRPNQQFDYSSSS
QSKGDGEEDSDEVSLDADDDEYEGEDFDQLKWTERKRRSFRNTSLAFSPD
GSRSSPEATPPMVYVELGGKIVIIRDKPQPNIVLEDDKELKTQMHKFLGL
IPSRRKLFDPSEYNMDRGDIEMDVYVPTSLVTNPSPRSSPSPVTPSARSR
IWQETTPTSICSNLNLSHTYTPTVNELQTKHMDDSIIQVNLDCFQKKTPD
SVKEPIDLSELPSQKQLATNCRRHKSCVARLERHPHFYGFVQSLRPSVSL
NMCHPLALTFRRTNFQQSKVALAKVLFNMFNHAVFHCGLQVPIVWKHAMK
KRWKCELGFDASGRRTAQILLLHSIDTAAELIYLLLHEMCHVAAFLFNRE
LGHGDNCRRWTYQAKMAFPEVPALMECIASFMYTCSMCSRSSYGLADLKS
YNIRCYYCQFEVSVKPVSKANMHEGARSDRTMTPFKCFIRDKYLKLGAEG
GVTHSSKMALLNEMFAKMTAATE*
BS10468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2694-PD | 822 | CG2694-PD | 150..822 | 1..673 | 3529 | 100 | Plus |
CG2694-PB | 673 | CG2694-PB | 1..673 | 1..673 | 3529 | 100 | Plus |
CG2694-PA | 825 | CG2694-PA | 153..825 | 1..673 | 3529 | 100 | Plus |
CG11322-PB | 480 | CG11322-PB | 1..480 | 139..673 | 1415 | 56.1 | Plus |
CG14814-PD | 1030 | CG14814-PD | 769..1003 | 439..667 | 224 | 28.1 | Plus |