Clone BS10469 Report

Search the DGRC for BS10469

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptActn-RA
Protein status:BS10469.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10469.3prime Sequence

899 bp (859 high quality bases) assembled on 2006-04-19

> BS10469.3prime
ATGGTCTAGAAAGCTTTTACAAGTCGGTCTCGCCGTAGAGAGCTGTGCTG
AAGGACATGTAGTCCAGGGCGCCGGGCACTCCGTTGGGTCCCTTATAGGG
CGGCATGCGCTGGATGCAGTACTCGGCCTGGTCTGGCGGCAACTCGCGAC
GCAGTTCGTCGGGCAAAATGTATGGCTTGTCGGCTGCCAGGATTCGGAAG
GAGTCGATGACTTGTTCGGCAGTGTCGGTATCGGTGCTCTCGCGGGTCAT
GAAGTCGAGGAAGGCGTCGAAGTGCACGTAGCCAGTGTTGTTGGGATCGA
CGACGGCGAGGATGCGCTGGAAGTCCAAATCACCCTGGCGATCCTTGCCA
ATCGAGTAGCCCAACGAGACCAAGCACGACTTGAACTCCTCGGGCGACAG
TCGGCCGGTGCGGTTCTTGTCGAAGTGGTTGAAGCTGCTGCGGAATTCGT
TCAGCTGCTCCTGGCTAATGCCCTTGGAGTCGCGGGTGAGAATCTGGTTC
TCCACCTCGTTGATGTTGCGGTTGATAGATGTAAGCAGCTGCTCCCAGCC
GACGCGCAGCGTTTCCATCGTGTAGTTGGTGTATCGGTTCTCGAAGATCA
TCGATTCCTGCACCGCTTGGTGGATCTTCTCCAGCTCCTCAATGTTCGGC
TTGTAGGCGTAGACGGCCTGCTCGTACTCCTTGAGCCGGTGCAGTTGGTC
CTCCAGCGATCCCTGCAGTCCCATACCGATGGCCGTAACAGCATCCATTT
GCCGCTCGATCCAGGGGCCGACAATGTTGGCCTTCTCGGCAAACTGACGG
CGGAGCATTTCGTTGTTCTGTTGCTTGCGCAGCTCGTTGGCCAAAGTCTG
GTCGCGTTGGGGCACCAGTTGGCGGACGTCGCTCCACTTGCGCGTCATG

BS10469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4376-PC 2754 Actn-RC 1872..2754 899..17 4415 100 Minus
CG4376-PB 2688 Actn-RB 1806..2688 899..17 4415 100 Minus
CG4376-PA 2688 Actn-RA 1806..2688 899..17 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RJ 3366 CG4376-RJ 2059..2945 899..13 4420 99.9 Minus
Actn-RI 3516 CG4376-RI 2209..3095 899..13 4420 99.9 Minus
Actn-RH 3351 CG4376-RH 2044..2930 899..13 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2025775..2026498 176..899 3620 100 Plus
X 23542271 X 2025537..2025701 13..177 810 99.4 Plus
Blast to na_te.dros performed on 2015-02-06 17:21:16 has no hits.

BS10469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:01 Download gff for BS10469.3prime
Subject Subject Range Query Range Percent Splice Strand
Actn-PA 1806..2688 17..899 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:13 Download gff for BS10469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4376-PA 1806..2688 17..899 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:31:35 Download gff for BS10469.3prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RH 2044..2930 13..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:29:12 Download gff for BS10469.3prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RH 2044..2930 13..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:29:12 Download gff for BS10469.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2025537..2025699 13..175 99 <- Plus
X 2025775..2026498 176..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:31:35 Download gff for BS10469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1919570..1919732 13..175 99 <- Plus
arm_X 1919808..1920531 176..899 100   Plus

BS10469.5prime Sequence

820 bp (780 high quality bases) assembled on 2006-04-19

> BS10469.5prime
GAAGTTATCAGTCGACATGATGATGGAGAACGGACTCTCCATGGAGTACG
GAGATGGCTACATGGAGCAGGAGGAGGAGTGGGAGCGCGAGGGCCTGCTC
GATCCTGCGTGGGAGAAGCAACAGAAGAAGACATTTACCGCCTGGTGTAA
CAGCCATTTGCGCAAGGCCGGTACAGCCATCGACAACATCGAGGAGGACT
TCCGCAACGGCCTCAAGCTGATGCTGCTGCTGGAGGTGATCTCCGGCGAG
ACGCTCCCCAAGCCCGATCGCGGCAAGATGCGCTTCCACAAGATCGCCAA
CGTGAACAAGGCTCTCGACTTCATCGCCTCCAAGGGCGTCCACCTGGTCT
CTATCGGCGCCGAGGAGATCGTCGATGGAAACTTGAAGATGACTCTGGGT
ATGATCTGGACGATTATCCTGCGCTTCGCCATTCAGGACATCTCCGTGGA
GGAGATGACCGCCAAGGAGGGTCTGCTGCTGTGGTGCCAGCGCAAGACGG
CTCCCTACAAGAACGTCAACGTACAGAACTTCCATCTGTCGTTCAAGGAT
GGTCTGGCCTTCTGCGCCCTTATCCATCGCCATCGTCCAGATCTAATCGA
CTACGCCAAGCTGTCCAAAGACAATCCTCTGGAGAATCTTAATACTGCCT
TCGATGTGGCCGAGAAGTACCTGGATATTCCGCGCATGTTGGATCCAGAT
GATCTCCAGAATACAGCTTTGCCCGATGAGCGGGCGGTGATGACGTATGT
GTCCTCGTACTATCACTGCTTCAGTGGCGCCCAAAAGGCGGAAACCGCTG
CCAACCGGATCTGCAAGGTG

BS10469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4376-PA 2688 Actn-RA 1..804 17..820 4020 100 Plus
CG4376-PB 2688 Actn-RB 1..687 17..703 3435 100 Plus
CG4376-PC 2754 Actn-RC 1..687 17..703 3435 100 Plus
CG4376-PB 2688 Actn-RB 770..804 786..820 175 100 Plus
CG4376-PC 2754 Actn-RC 838..870 788..820 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RF 3877 CG4376-RF 399..1202 17..820 4020 100 Plus
Actn-RA 3511 CG4376-RA 399..1202 17..820 4020 100 Plus
Actn-RI 3516 CG4376-RI 404..1207 17..820 3555 96.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2030442..2030861 548..129 2100 100 Minus
X 23542271 X 2030215..2030370 701..546 780 100 Minus
X 23542271 X 2034955..2035068 130..17 570 100 Minus
X 23542271 X 2028664..2028751 788..701 440 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:33:22 has no hits.

BS10469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:02 Download gff for BS10469.5prime
Subject Subject Range Query Range Percent Splice Strand
Actn-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:14 Download gff for BS10469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4376-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:02:52 Download gff for BS10469.5prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 393..1202 9..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:37:26 Download gff for BS10469.5prime
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 393..1202 9..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:37:26 Download gff for BS10469.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2027995..2028027 788..820 100 <- Minus
X 2028665..2028750 702..787 100 <- Minus
X 2030215..2030368 548..701 100 <- Minus
X 2030443..2030859 131..547 100 <- Minus
X 2034955..2035074 9..130 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:02:52 Download gff for BS10469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1922028..1922060 788..820 100 <- Minus
arm_X 1922698..1922783 702..787 100 <- Minus
arm_X 1924248..1924401 548..701 100 <- Minus
arm_X 1924476..1924892 131..547 100 <- Minus
arm_X 1928988..1929107 9..130 96   Minus

BS10469.complete Sequence

2720 bp assembled on 2007-11-30

GenBank Submission: FJ636677

> BS10469.complete
GAAGTTATCAGTCGACATGATGATGGAGAACGGACTCTCCATGGAGTACG
GAGATGGCTACATGGAGCAGGAGGAGGAGTGGGAGCGCGAGGGCCTGCTC
GATCCTGCGTGGGAGAAGCAACAGAAGAAGACATTTACCGCCTGGTGTAA
CAGCCATTTGCGCAAGGCCGGTACAGCCATCGACAACATCGAGGAGGACT
TCCGCAACGGCCTCAAGCTGATGCTGCTGCTGGAGGTGATCTCCGGCGAG
ACGCTCCCCAAGCCCGATCGCGGCAAGATGCGCTTCCACAAGATCGCCAA
CGTGAACAAGGCTCTCGACTTCATCGCCTCCAAGGGCGTCCACCTGGTCT
CTATCGGCGCCGAGGAGATCGTCGATGGAAACTTGAAGATGACTCTGGGT
ATGATCTGGACGATTATCCTGCGCTTCGCCATTCAGGACATCTCCGTGGA
GGAGATGACCGCCAAGGAGGGTCTGCTGCTGTGGTGCCAGCGCAAGACGG
CTCCCTACAAGAACGTCAACGTACAGAACTTCCATCTGTCGTTCAAGGAT
GGTCTGGCCTTCTGCGCCCTTATCCATCGCCATCGTCCAGATCTAATCGA
CTACGCCAAGCTGTCCAAAGACAATCCTCTGGAGAATCTTAATACTGCCT
TCGATGTGGCCGAGAAGTACCTGGATATTCCGCGCATGTTGGATCCAGAT
GATCTCCAGAATACAGCTTTGCCCGATGAGCGGGCGGTGATGACGTATGT
GTCCTCGTACTATCACTGCTTCAGTGGCGCCCAAAAGGCGGAAACCGCTG
CCAACCGGATCTGCAAGGTGCTCAAGGTCAACCAGGAGAACGAACGCCTC
ATGGAGGAGTACGAGCGTCTGGCCAGTGATTTGCTGGAGTGGATCCGTCG
CACCATGCCCTGGTTGAACTCGCGCCAGGCCGACAACTCGCTGGCAGGTG
TGCAGAAGAAGCTGGAGGAGTACCGCACCTACCGTCGCAAGCACAAGCCA
CCACGTGTGGAGCAGAAGGCCAAGCTGGAGACCAACTTCAACACGCTGCA
GACCAAGCTGCGCCTGTCCAACCGGCCCGCCTACCTGCCCACCGAGGGCA
AGACCGTGTCCGACATCTCCAACTCGTGGAAGGGCCTGGAGCTGGCCGAG
AAGGCCTTTGAGGAATGGCTGCTGGCCGAGACCATGCGCCTGGAGCGCCT
TGAACATCTGGCCCAGAAGTTCAAGCACAAGGCCGATGCCCACGAGGACT
GGACGCGTGGCAAGGAGGAGATGCTGCAGTCGCAGGACTTCCGCCAGTGC
AAGCTCAACGAGCTGAAGGCCCTAAAGAAGAAGCACGAAGCCTTTGAGTC
TGACCTGGCCGCCCACCAGGATCGTGTGGAGCAGATTGCCGCCATCGCCC
AGGAGCTTAACACTCTGGAGTACCATGACTGTGTGTCTGTGAACGCCAGG
TGCCAGCGCATCTGCGACCAATGGGATCGCTTGGGTGCTCTTACCCAGCG
CAGGCGCACCGCCTTAGACGAGGCCGAGCGAATCCTGGAGAAGATCGACA
TCTTGCATTTGGAGTTCGCGAAGCGTGCGGCGCCGTTCAACAACTGGCTG
GATGGTACGCGCGAGGATCTTGTGGACATGTTTATTGTACACACCATGGA
GGAAATCCAAGGCCTGATCCAGGCGCACGACCAGTTCAAGGCGACCCTGG
GTGAGGCCGACAAGGAGTTCAACCTGATCGTGAACCTGGTCCGCGAAGTG
GAGTCGATTGTGAAGCAGCACCAGATCCCCGGCGGCCTAGAGAACCCCTA
CACCACCCTGACCGCCAACGACATGACGCGCAAGTGGAGCGACGTCCGCC
AACTGGTGCCCCAACGCGACCAGACTTTGGCCAACGAGCTGCGCAAGCAA
CAGAACAACGAAATGCTCCGCCGTCAGTTTGCCGAGAAGGCCAACATTGT
CGGCCCCTGGATCGAGCGGCAAATGGATGCTGTTACGGCCATCGGTATGG
GACTGCAGGGATCGCTGGAGGACCAACTGCACCGGCTCAAGGAGTACGAG
CAGGCCGTCTACGCCTACAAGCCGAACATTGAGGAGCTGGAGAAGATCCA
CCAAGCGGTGCAGGAATCGATGATCTTCGAGAACCGATACACCAACTACA
CGATGGAAACGCTGCGCGTCGGCTGGGAGCAGCTGCTTACATCTATCAAC
CGCAACATCAACGAGGTGGAGAACCAGATTCTCACCCGCGACTCCAAGGG
CATTAGCCAGGAGCAGCTGAACGAATTCCGCAGCAGCTTCAACCACTTCG
ACAAGAACCGCACCGGCCGACTGTCGCCCGAGGAGTTCAAGTCGTGCTTG
GTCTCGTTGGGCTACTCGATTGGCAAGGATCGCCAGGGTGATTTGGACTT
CCAGCGCATCCTCGCCGTCGTCGATCCCAACAACACTGGCTACGTGCACT
TCGACGCCTTCCTCGACTTCATGACCCGCGAGAGCACCGATACCGACACT
GCCGAACAAGTCATCGACTCCTTCCGAATCCTGGCAGCCGACAAGCCATA
CATTTTGCCCGACGAACTGCGTCGCGAGTTGCCGCCAGACCAGGCCGAGT
ACTGCATCCAGCGCATGCCGCCCTATAAGGGACCCAACGGAGTGCCCGGC
GCCCTGGACTACATGTCCTTCAGCACAGCTCTCTACGGCGAGACCGACTT
GTAAAAGCTTTCTAGACCAT

BS10469.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RA 2688 CG4376-PA 1..2688 17..2704 13440 100 Plus
Actn-RF 2694 CG4376-PF 1..2694 17..2704 13345 99.8 Plus
Actn-RI 2688 CG4376-PI 1..2688 17..2704 12975 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-RA 3511 CG4376-RA 399..3090 17..2708 13445 100 Plus
Actn-RF 3877 CG4376-RF 399..3096 17..2708 13350 99.7 Plus
Actn-RI 3516 CG4376-RI 404..3095 17..2708 12980 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2025775..2026909 2545..1411 5675 100 Minus
X 23542271 X 2030442..2030861 548..129 2100 100 Minus
X 23542271 X 2027520..2027871 1232..881 1760 100 Minus
X 23542271 X 2027284..2027464 1410..1230 905 100 Minus
X 23542271 X 2025537..2025701 2708..2544 810 99.4 Minus
X 23542271 X 2030215..2030370 701..546 780 100 Minus
X 23542271 X 2034955..2035068 130..17 570 100 Minus
X 23542271 X 2027935..2028033 880..782 480 99 Minus
X 23542271 X 2028664..2028751 788..701 440 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:32:57 has no hits.

BS10469.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:46 Download gff for BS10469.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 1..2688 17..2704 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:21 Download gff for BS10469.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 393..3090 9..2708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:43 Download gff for BS10469.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 399..3084 17..2702 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:18 Download gff for BS10469.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 399..3084 17..2702 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:08 Download gff for BS10469.complete
Subject Subject Range Query Range Percent Splice Strand
Actn-RA 399..3084 17..2702 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:08 Download gff for BS10469.complete
Subject Subject Range Query Range Percent Splice Strand
X 2027284..2027462 1232..1410 100 <- Minus
X 2025543..2025699 2546..2702 100 <- Minus
X 2025775..2026909 1411..2545 100 <- Minus
X 2027521..2027871 881..1231 100 <- Minus
X 2027935..2028027 788..880 100 <- Minus
X 2028665..2028750 702..787 100 <- Minus
X 2030215..2030368 548..701 100 <- Minus
X 2030443..2030859 131..547 100 <- Minus
X 2034955..2035068 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:43 Download gff for BS10469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1919576..1919732 2546..2702 100 <- Minus
arm_X 1919808..1920942 1411..2545 100 <- Minus
arm_X 1921317..1921495 1232..1410 100 <- Minus
arm_X 1921554..1921904 881..1231 100 <- Minus
arm_X 1921968..1922060 788..880 100 <- Minus
arm_X 1922698..1922783 702..787 100 <- Minus
arm_X 1924248..1924401 548..701 100 <- Minus
arm_X 1924476..1924892 131..547 100 <- Minus
arm_X 1928988..1929101 17..130 100   Minus

BS10469.pep Sequence

Translation from 16 to 2703

> BS10469.pep
MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWCNSHLRK
AGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKAL
DFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAK
EGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLS
KDNPLENLNTAFDVAEKYLDIPRMLDPDDLQNTALPDERAVMTYVSSYYH
CFSGAQKAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWL
NSRQADNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRL
SNRPAYLPTEGKTVSDISNSWKGLELAEKAFEEWLLAETMRLERLEHLAQ
KFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESDLAAH
QDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTAL
DEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGL
IQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTA
NDMTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPWIE
RQMDAVTAIGMGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQE
SMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQILTRDSKGISQEQ
LNEFRSSFNHFDKNRTGRLSPEEFKSCLVSLGYSIGKDRQGDLDFQRILA
VVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAADKPYILPDE
LRRELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGETDL*

BS10469.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Actn-PA 895 CG4376-PA 1..895 1..895 4678 100 Plus
Actn-PF 897 CG4376-PF 1..897 1..895 4665 99.8 Plus
Actn-PI 895 CG4376-PI 1..895 1..895 4636 99.1 Plus
Actn-PD 895 CG4376-PD 1..895 1..895 4636 99.1 Plus
Actn-PB 895 CG4376-PB 1..895 1..895 4636 99.1 Plus