Clone BS10470 Report

Search the DGRC for BS10470

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG16940-RA
Protein status:BS10470.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10470.3prime Sequence

947 bp (812 high quality bases) assembled on 2006-04-19

> BS10470.3prime
ATGGTCTAGAAAGCTTCTAAATTTGTTCTTCCATCTTTAAAAATCCAGTT
AGTTTTTGGTCCCAAATGATCAGACATATGGGGACCACGGAAAGCAGCTG
CAACTTCCTAGGTGACTGCTTTAAGTTGCGCTCGGCAATAAGAATGTAAT
TGGGTACGCCGTGTGTGTCTACGAGGACCTTTTGCATTTTGTAGTTAATG
CTTATAACGTGGCCCGACTCCAGAGTAACTACGTTCATCATATGCTGAAA
TATTTCAATGACCACAGCTCGCATGTATATGCCCTGCTTGTTGTGAACAT
ATCGTTTGAAGTACAAGTTACCAGAGTCCTCTCCGGCCTTTTTCGCATTG
TACTTGCGCTCATTCGCTAATTTCGTTAAGGTGTGCAAATCATCTGGGGT
ACGTTTAGGCGGTGTACAATATTTAAGTGCGGCCGCCAAAAGTCGGTGCA
CCAAAATATCAGGATACCGACGGATTGGGCTAGTAAAGTGAGTGTATATG
GGTATGGACAAGGCGTAGTGCCACAGGTCAGCCGGTTCCGATTTACCCTC
GCTACAAAAATATGTTGCACGGGCCATTGGTTTCATCAAAAGCTGACTTA
GGCAGGCATTCATTGCGACAGGATTGGGCGCCTCATTGCACAACCGCACC
ATGCTCTCCTGGAGCGCCTTAGACGAGCTATAGTCCAATTCGAATCCCAG
AGCAAGCAGCTTTTCCCTTAAAGCCTTAAGGGACTTAATAAGTGGCGGAG
GGTGGTTACGCAGTACAGCGATATCCGGAAAGGAGTCGTGTATAAAGCGG
GCGACTGCCTGGTTGGCCAGGAGCATAAACTCTTCAATCAGCCGGTTAGC
CTCTCGCTGTTTCTCCACTTCAAAAAGACACGGCTCGCCAGTAATTGGAT
CGAGCAGGAAGCGTAGCTTGGCATTGTTAATTGTGAGTGCGCCATTG

BS10470.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-PB 3099 CG16940-RB 2241..3099 875..17 4295 100 Minus
CG16940-PC 3135 CG16940-RC 2277..3135 875..17 4295 100 Minus
CG16940-PA 3099 CG16940-RA 2241..3099 875..17 4295 100 Minus
CG16940-PB 3099 CG16940-RB 2169..2236 947..880 340 100 Minus
CG16940-PC 3135 CG16940-RC 2205..2272 947..880 340 100 Minus
CG16940-PA 3099 CG16940-RA 2169..2236 947..880 340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3605 CG16940-RA 2305..3235 947..17 4610 99.8 Minus
CG16940-RC 3546 CG16940-RC 2246..3176 947..17 4610 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 215682..216109 444..17 2140 100 Minus
3L 28110227 3L 215068..215451 947..564 1860 99 Minus
3L 28110227 3L 215505..215624 563..444 600 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:48:59 has no hits.

BS10470.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:04 Download gff for BS10470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PB 2169..3099 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:15 Download gff for BS10470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PA 2169..3099 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:45 Download gff for BS10470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 2246..3176 17..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:38 Download gff for BS10470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 2246..3176 17..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:38 Download gff for BS10470.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 215068..215451 564..947 99 -> Minus
3L 215505..215624 444..563 100 -> Minus
3L 215683..216109 17..443 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:45 Download gff for BS10470.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 215068..215451 564..947 99 -> Minus
arm_3L 215505..215624 444..563 100 -> Minus
arm_3L 215683..216109 17..443 100   Minus

BS10470.5prime Sequence

907 bp (804 high quality bases) assembled on 2006-04-19

> BS10470.5prime
GAAGTTATCAGTCGACATGTCGGAAACGTCAAGCGTCAACGTGGATGCGG
ACCGAGATTGCAGAAGGATTGAGGGCCTCCGACAGCGCTCACAACGCCTT
GCTGCCCGCCTCCAGCAGATGCAGAGGGAAATGGAGTCTAATGCATCCAG
CAAAGACCTATCGGCCAACAATGCCGTTATTCCGCTGCAGCCACTAATGC
GCTGGGCGGAACCACGGCCACATCCCAACCAATCCCAACCATCTGCTCGG
AGCAACAGCAGGCAGGCCATTCCTTACGGTGTGCCAGTATCCACGCCAGC
GCCGGTAGCTATGCAATTGCCCTACCACGTAGCATTCGCCTCCTACCAGG
CGACCATGCAGATTCCCTGCCTTCAGCCACTTTCGCATTTGCACGTCGTG
TCTAGTCCCAGCCATCGGTTAATAGCGAAAAAGAAGTCGAAGCGGGCTCT
TCGAAATGAGGTGGAAGCTCTTCAGGATATGGTCAAACATCTTTCACACC
TCTCCCCAGATGTTAACGCGTATGCCTGCCAGCTGATACGTAAAAACGAG
ATCCTTTCTCAGCTCGAGTGGAGTCAGACCAGGTCAGAAGCACATCCGCA
ACAGGTTGGTTACCAGGGGCGGCATCGCCACGATTCTGAGGTCTCTGCTA
CAAACAATGGAAGTCATGTACAGCAGCAACCGAAACTAGGACGAAGGCAA
CGCAATAGCAAGAAAAACGATGGATCCGGTAGCAATGGGACCCAATCGCA
AAAAACCGAACTAGAGGCCATGCGGTCGTACATAAACAAGATTGTCCAAC
GTCACGTGGGTATGGATCACCAGTTGTCGGAGGACTTGATTTTCAAGGTA
ACTTCTCCGAACTGGAAGCGCATGCGCAGAGACTAGTTGCGGCGGGTTAT
GGGCGCA

BS10470.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-PB 3099 CG16940-RB 1..830 17..846 4125 99.8 Plus
CG16940-PC 3135 CG16940-RC 37..866 17..846 4125 99.8 Plus
CG16940-PA 3099 CG16940-RA 1..830 17..846 4125 99.8 Plus
CG16940-PB 3099 CG16940-RB 830..892 845..907 290 98.4 Plus
CG16940-PC 3135 CG16940-RC 866..928 845..907 290 98.4 Plus
CG16940-PA 3099 CG16940-RA 830..892 845..907 290 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3605 CG16940-RA 137..1028 17..907 4405 99.7 Plus
CG16940-RC 3546 CG16940-RC 78..969 17..907 4405 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 212845..213736 17..907 4380 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:45:18 has no hits.

BS10470.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:05 Download gff for BS10470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PB 1..891 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:17 Download gff for BS10470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:14 Download gff for BS10470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 74..968 10..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:05 Download gff for BS10470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 74..968 10..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:05 Download gff for BS10470.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 212843..213735 14..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:14 Download gff for BS10470.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 212843..213735 14..906 99   Plus

BS10470.complete Sequence

3131 bp assembled on 2007-11-30

GenBank Submission: FJ636678

> BS10470.complete
GAAGTTATCAGTCGACATGTCGGAAACGTCAAGCGTCAACGTGGATGCGG
ACCGAGATTGCAGAAGGATTGAGGGCCTCCGACAGCGCTCACAACGCCTT
GCTGCCCGCCTCCAGCAGATGCAGAGGGAAATGGAGTCTAATGCATCCAG
CAAAGACCTATCGGCCAACAATGCCGTTATTCCGCTGCAGCCACTAATGC
GCTGGGCGGAACCACGGCCACATCCCAACCAATCCCAACCATCTGCTCGG
AGCAACAGCAGGCAGGCCATTCCTTACGGTGTGCCAGTATCCACGCCAGC
GCCGGTAGCTATGCAATTGCCCTACCACGTAGCATTCGCCTCCTACCAGG
CGACCATGCAGATTCCCTGCCTTCAGCCACTTTCGCATTTGCACGTCGTG
TCTAGTCCCAGCCATCGGTTAATAGCGAAAAAGAAGTCGAAGCGGGCTCT
TCGAAATGAGGTGGAAGCTCTTCAGGATATGGTCAAACATCTTTCACACC
TCTCCCCAGATGTTAACGCGTATGCCTGCCAGCTGATACGTAAAAACGAG
ATCCTTTCTCAGCTCGAGTGGAGTCAGACCAGGTCAGAAGCACATCCGCA
ACAGGTTGGTTACCAGGGGCGGCATCGCCACGATTCTGAGGTCTCTGCTA
CAAACAATGGAAGTCATGTACAGCAGCAACCGAAACTAGGACGAAGGCAA
CGCAATAGCAAGAAAAACGATGGATCCGGTAGCAATGGGACCCAATCGCA
AAAAACCGAACTAGAGGCCATGCGGTCGTACATAAACAAGATTGTCCAAC
GTCACGTGGGTATGGATCACCAGTTGTCGGAAGACTTGATTTTCAAAGGT
AACTTCTCCGACCTGGAAGCGCATGCGCAGAGACTAGTTGCGGCGGGTTA
TGGGCGCATTGTAGAAGAGGAAATCCGGGTTAACCGCAAGAACAACAGAC
AGGCCTTTATAATCATGTCCACTGATCGAGAAGCACTCGAACGAGATGGC
ATCGTGCTCTTGCCAGTGGCTAGGCGCTATGCCTTCGATGGTGACAAAGT
ACGTGCATTCGTGCTAAACCCTGGTGCTCAGGGTAGTTCAAAGACAGCTG
AGCCCTCGTCTGGTGAAATCTCTGGTGGGAAGCCCTCATTATCTCTTGCG
GATGGTGAGGAGCTTTCGGACGATACCGAGTCCCAGGGCTCTGAGTCCGA
TACCGACAACGTGGTCGTGATATCGTCGGACAACTGCCCTAAAGCGTTCG
TCATAGCAATAACTAAACGAACTGAGCTCCGCCAGATCGTGGGAACCATA
TCGTTTACGAACCCAACCAAACTCTGTGACGACCAGCTATTCTACAAATT
CCGACCGTACGATTTGCGTGTCCCCATGGTCTACGTTCCGAAGGATGCCT
GTGCCGCCCACATCGGAAACAAGCAGCAAATAGACGTGTCCGGCCTCTTA
TACCTTGCCCATATACTCGAGACAGATTGCAATGGGCACTGCATCGCTGA
ACTAATCCAGCCGGTTGGCCGCGTGGGTAATTTGGATGACGAACTTAAGG
CAATTCTGTTTCATAACGGTCTCCGGGATATAAAGCCATTTGAGCAACGA
TTTATCGACATTTACTCCCAGCCGCCACCTCCGATAAGCCAAGAGGATCT
GCGTCAACGAAAAGACTTAAGAAAGATGTGCATATTTACTATAGATCCGA
TGACTGCTCGCGATTTGGATGACGCCGTTTCTATAGAGAAGCTAGGCGAC
AACGAATATGAGATTGGCGTCCATATATCCGATGTTTCGCACTTCCTGAT
AGAGGACAATGAACTGGATAACATAGTGAAGGAACGCTCTACGTCTATTT
ATTTAGCCAACGAGGTAATCCACATGCTGCCTCAGTCTCTATGCATGCGA
TGTTCCCTGCTCCCTGGGCAAGACAAGTTTGCTTTTTCCGTCTTCTGGCG
GATGAACGGGAAGGGAGTCATGCTGCAAAAGAAGCCAGAATTTTGCCGCA
CAGTCATTAACTCTTGCTCGCAATTTGCTTATGAACACGCTCAAAAGATC
ATCGACAACCCTAATGAACGGTTTACCGAGAACGACTTTCCGACCATCCT
GAATGGATTTAATCCCGATGATATCAGAAATAGGGTGCTATGGCTGCACG
ACATTGCAAGCTCCATCCGTAAGACACGTTTAGACAATGGCGCACTCACA
ATTAACAATGCCAAGCTACGCTTCCTGCTCGATCCAATTACTGGCGAGCC
GTTGTCTTTTGAAGTGGAGAAACAGCGAGAGGCTAACCGGCTGATTGAAG
AGTTTATGCTCCTGGCCAACCAGGCAGTCGCCCGCTTTATACACGACTCC
TTTCCGGATATCGCTGTACTGCGTAACCACCCTCCGCCACTTATTAAGTC
CCTTAAGGCTTTAAGGGAAAAGCTGCTTGCTCTGGGATTCGAATTGGACT
ATAGCTCGTCTAAGGCGCTCCAGGAGAGCATGGTGCGGTTGTGCAATGAG
GCGCCCAATCCTGTCGCAATGAATGCCTGCCTAAGTCAGCTTTTGATGAA
ACCAATGGCCCGTGCAACATATTTTTGTAGCGAGGGTAAATCGGAACCGG
CTGACCTGTGGCACTACGCCTTGTCCATACCCATATACACTCACTTTACT
AGCCCAATCCGTCGGTATCCTGATATTTTGGTGCACCGACTTTTGGCGGC
CGCACTTAAATATTGTACACCGCCTAAACGTACCCCAGATGATTTGCACA
CCTTAACGAAATTAGCGAATGAGCGCAAGTACAATGCGAAAAAGGCCGGA
GAGGACTCTGGTAACTTGTACTTCAAACGATATGTTCACAACAAGCAGGG
CATATACATGCGAGCTGTGGTCATTGAAATATTTCAGCATATGATGAACG
TAGTTACTCTGGAGTCGGGCCACGTTATAAGCATTAACTACAAAATGCAA
AAGGTCCTCGTAGACACACACGGCGTACCCAATTACATTCTTATTGCCGA
GCGCAACTTAAAGCAGTCACCTAGGAAGTTGCAGCTGCTTTCCGTGGTCC
CCATATGTCTGATCATTTGGGACCAAAAACTAACTGGATTTTTAAAGATG
GAAGAACAAATTTAGAAGCTTTCTAGACCAT

BS10470.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3099 CG16940-PA 1..3099 17..3115 15495 100 Plus
CG16940-RC 3135 CG16940-PC 37..3135 17..3115 15495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-RA 3605 CG16940-RA 137..3235 17..3115 15495 100 Plus
CG16940-RC 3546 CG16940-RC 78..3176 17..3115 15495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 214031..215451 1148..2568 7105 100 Plus
3L 28110227 3L 212845..213976 17..1148 5660 100 Plus
3L 28110227 3L 215682..216109 2688..3115 2140 100 Plus
3L 28110227 3L 215505..215624 2569..2688 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:55:49 has no hits.

BS10470.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:47 Download gff for BS10470.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RA 1..3099 17..3115 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:23 Download gff for BS10470.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RA 107..3207 14..3115 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:52 Download gff for BS10470.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 78..3176 17..3115 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:03 Download gff for BS10470.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RA 109..3207 17..3115 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:31 Download gff for BS10470.complete
Subject Subject Range Query Range Percent Splice Strand
CG16940-RC 78..3176 17..3115 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:31 Download gff for BS10470.complete
Subject Subject Range Query Range Percent Splice Strand
3L 212845..213976 17..1148 100 -> Plus
3L 214032..215451 1149..2568 100 -> Plus
3L 215505..215624 2569..2688 100 -> Plus
3L 215683..216109 2689..3115 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:52 Download gff for BS10470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 212845..213976 17..1148 100 -> Plus
arm_3L 214032..215451 1149..2568 100 -> Plus
arm_3L 215505..215624 2569..2688 100 -> Plus
arm_3L 215683..216109 2689..3115 100   Plus

BS10470.pep Sequence

Translation from 16 to 3114

> BS10470.pep
MSETSSVNVDADRDCRRIEGLRQRSQRLAARLQQMQREMESNASSKDLSA
NNAVIPLQPLMRWAEPRPHPNQSQPSARSNSRQAIPYGVPVSTPAPVAMQ
LPYHVAFASYQATMQIPCLQPLSHLHVVSSPSHRLIAKKKSKRALRNEVE
ALQDMVKHLSHLSPDVNAYACQLIRKNEILSQLEWSQTRSEAHPQQVGYQ
GRHRHDSEVSATNNGSHVQQQPKLGRRQRNSKKNDGSGSNGTQSQKTELE
AMRSYINKIVQRHVGMDHQLSEDLIFKGNFSDLEAHAQRLVAAGYGRIVE
EEIRVNRKNNRQAFIIMSTDREALERDGIVLLPVARRYAFDGDKVRAFVL
NPGAQGSSKTAEPSSGEISGGKPSLSLADGEELSDDTESQGSESDTDNVV
VISSDNCPKAFVIAITKRTELRQIVGTISFTNPTKLCDDQLFYKFRPYDL
RVPMVYVPKDACAAHIGNKQQIDVSGLLYLAHILETDCNGHCIAELIQPV
GRVGNLDDELKAILFHNGLRDIKPFEQRFIDIYSQPPPPISQEDLRQRKD
LRKMCIFTIDPMTARDLDDAVSIEKLGDNEYEIGVHISDVSHFLIEDNEL
DNIVKERSTSIYLANEVIHMLPQSLCMRCSLLPGQDKFAFSVFWRMNGKG
VMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNERFTENDFPTILNGFNP
DDIRNRVLWLHDIASSIRKTRLDNGALTINNAKLRFLLDPITGEPLSFEV
EKQREANRLIEEFMLLANQAVARFIHDSFPDIAVLRNHPPPLIKSLKALR
EKLLALGFELDYSSSKALQESMVRLCNEAPNPVAMNACLSQLLMKPMARA
TYFCSEGKSEPADLWHYALSIPIYTHFTSPIRRYPDILVHRLLAAALKYC
TPPKRTPDDLHTLTKLANERKYNAKKAGEDSGNLYFKRYVHNKQGIYMRA
VVIEIFQHMMNVVTLESGHVISINYKMQKVLVDTHGVPNYILIAERNLKQ
SPRKLQLLSVVPICLIIWDQKLTGFLKMEEQI*

BS10470.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16940-PA 1032 CG16940-PA 1..1032 1..1032 5348 100 Plus
CG16940-PC 1044 CG16940-PC 13..1044 1..1032 5348 100 Plus
Dis3-PB 982 CG6413-PB 258..804 310..897 660 31.6 Plus
Dis3-PA 982 CG6413-PA 258..804 310..897 660 31.6 Plus