Clone Sequence Records
BS10475.3prime Sequence
913 bp (751 high quality bases) assembled on 2006-04-19
> BS10475.3prime
ATGGTCTAGAAAGCTTTCAACAGAATCCCGGATTTGTGTGTTCGATGATG
CAGCGCTTGCAGTACTTCTTGACCGCCCGGTAGCCCTCGATGGAAACCGG
ACAGTCCTGGATATTCAGTTGCTGGAGACCGCGACAATAATATGCGATAC
ACTGCACCCCGCGGTCCGTGATCATGTCGCAGCTGCGCAGGCTGAGCTTC
TTCAGGTTCGGACAGCTCTCGGCCAGAGCTCGAAGCCCCGCGTCGCTCAC
ATCGCACTTCCCGATGTCCAAGGCTCGCAGACGTGGACAGGATCTCGCCA
GGACCGTAATGGAGTCATCGCTCACGGCCTCACATCCTCGAGCGTTCAGA
TAGCGCAGCTTATAGCACCGCCTGGCAATCACCTTTAGCCCCGCATCCGA
GACCCGCTCGCATTTGGCCACGGAAAGGTAGCGCAGTGCGGCTCCCAGCT
TGGCCAACTCATACAATCCGAAATCTGTGATGTTCAGGCAGTCGGACACA
CTGAGCTCCTTCAGCGAGACGCAAAAACTGGGCACAAACTTCAGACCCGC
ATCTGTGACTTGTATGCAGCGGCGCAGATAAAGGTAAACCAGCTGGGGGC
AGTTCTTGACCACGATCTTCAGACCCATGTCATCGATGGCCATGCAGTCC
GTGAGGTCCAGATATTGAAGCAGCAGGCGACGCGGTGGCTCCATGTGGGG
ATTAGGACTGATGCTGCTCACCTGGCTGCAGCCCGTCACATCCAGATGCT
GCAGGTTGCTGCACTTGGTCAGCGCCTCGACCAGCGCCTGATTGGTGATA
TCCACGCAGGTCTGTAGCTGAAGGTGGGTCAACTCGGGGCAGCGGCGCGT
GAGGAGCTGAAGGCCCTTGTCCGAGATGCGGCAGCCATCGGCGAGCATGA
CGCGCTCCACTTC
BS10475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-PA | 2319 | CG4221-RA | 1423..2319 | 913..17 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 3176 | CG4221-RA | 1896..2792 | 913..17 | 4485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15931966..15932503 | 554..17 | 2690 | 100 | Minus |
| 3R | 32079331 | 3R | 15931455..15931636 | 913..732 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 15931715..15931895 | 733..553 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:00:59 has no hits.
BS10475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:12 Download gff for
BS10475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1423..2319 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:27 Download gff for
BS10475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1423..2319 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:25 Download gff for
BS10475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 1896..2798 | 11..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:15 Download gff for
BS10475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 1896..2798 | 11..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:15 Download gff for
BS10475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15931455..15931635 | 733..913 | 100 | -> | Minus |
| 3R | 15931716..15931895 | 553..732 | 100 | -> | Minus |
| 3R | 15931968..15932509 | 11..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:25 Download gff for
BS10475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11757177..11757357 | 733..913 | 100 | -> | Minus |
| arm_3R | 11757438..11757617 | 553..732 | 100 | -> | Minus |
| arm_3R | 11757690..11758231 | 11..552 | 99 | | Minus |
BS10475.5prime Sequence
957 bp (743 high quality bases) assembled on 2006-04-19
> BS10475.5prime
GAAGTTATCAGTCGACATGTCGCACAAGACTAGCAACCGTCGCAGCAGCG
ACCTGGAGTGTCCACTTGCTTCATTGGGCCGCAACAGCAATGCGGTACGC
GACCACTACCACCACCCGCATCCGCTGAGCTCCAGTCCACTGGATCCACA
GGCCTACAAAATGATGTCCCGCAAGTCACCCAATCCCGGCCTGGAGGTGG
CCGAAGCGCTGGCCTCGCGCAGCTCCACGCCGCCCAGCGACCAGGCTGGG
GCATCCTCGACGGCGGCGGCGGCAGCAGTGCTCCATATGGTGCAGCAAAA
AGCGGCGACCTTTGAGTTGAGAGGCCGCCACTCGCGACCAACCGAGCAGC
AGACCAGCTATGGAGCCCATTCCACGGCTTCGGTGGGTAGGCATGCGAAG
AAGTCCCCAGAACTACCAGCTCCAGCGTCGAGGAACGTGGCTCCCGTACC
ACAGCCGCGGAACTTCCTAACACTAGAACATGTCCTGCAATTTGGAACCC
AGCGACCCAGTTGGATGCACGGCAACAGTGCGGACACGGAGGATTCGAGT
GACAACAACGCGGGTGGCGGTGGAGCTGGAAGTGGCAGTGGTGGAGCTGG
AGGACGGAGACGTGCCCAAGGTGGCCGCTGCAGTGTGCCCACTGTACTCA
GCAGCAATGGCAGCGGCGGCAATGGAGCCCAGTACCTGCTGGACAAGAAA
ATGGAGTCACTGTATCTGGGTAACGCCCTGAGAACCCTTCCCTTAGGCGC
CGAAGCGAGTCAGTTCCAAAACGAACGCTACTACCTGGAGGATTACAGCA
GCGGCAGCGGGAACGAGCGACTGCCAGAACGCCTGCATCATCCGCGCACC
TCCCAGTCCAGCGAAACAAGTGGATCGGATCGCTACCTCCTAAACCGCAG
CTCCNACTCCAACCACCTGCACTCAAAGGGCCAGAGCCTCTCGGACGGGC
TGTGCAA
BS10475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-PA | 2319 | CG4221-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG4221-PA | 2319 | CG4221-RA | 842..941 | 858..957 | 456 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 3176 | CG4221-RA | 473..1414 | 16..957 | 4639 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15929975..15930786 | 16..827 | 4060 | 100 | Plus |
| 3R | 32079331 | 3R | 15930840..15930973 | 824..957 | 584 | 95.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:36:31 has no hits.
BS10475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:13 Download gff for
BS10475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:28 Download gff for
BS10475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:31 Download gff for
BS10475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 469..1412 | 9..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:01 Download gff for
BS10475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 469..1412 | 9..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:01 Download gff for
BS10475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15929971..15930786 | 9..827 | 99 | -> | Plus |
| 3R | 15930844..15930971 | 828..955 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:31 Download gff for
BS10475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11755693..11756508 | 9..827 | 99 | -> | Plus |
| arm_3R | 11756566..11756693 | 828..955 | 96 | | Plus |
BS10475.complete Sequence
2351 bp assembled on 2007-11-30
GenBank Submission: FJ636679
> BS10475.complete
GAAGTTATCAGTCGACATGTCGCACAAGACTAGCAACCGTCGCAGCAGCG
ACCTGGAGTGTCCACTTGCTTCATTGGGCCGCAACAGCAATGCGGTACGC
GACCACTACCACCACCCGCATCCGCTGAGCTCCAGTCCACTGGATCCACA
GGCCTACAAAATGATGTCCCGCAAGTCACCCAATCCCGGCCTGGAGGTGG
CCGAAGCGCTGGCCTCGCGCAGCTCCACGCCGCCCAGCGACCAGGCTGGG
GCATCCTCGACGGCGGCGGCGGCAGCAGTGCTCCATATGGTGCAGCAAAA
AGCGGCGACCTTTGAGTTGAGAGGCCGCCACTCGCGACCAACCGAGCAGC
AGACCAGCTATGGAGCCCATTCCACGGCTTCGGTGGGTAGGCATGCGAAG
AAGTCCCCAGAACTACCAGCTCCAGCGTCGAGGAACGTGGCTCCCGTACC
ACAGCCGCGGAACTTCCTAACACTAGAACATGTCCTGCAATTTGGAACCC
AGCGACCCAGTTGGATGCACGGCAACAGTGCGGACACGGAGGATTCGAGT
GACAACAACGCGGGTGGCGGTGGAGCTGGAAGTGGCAGTGGTGGAGCTGG
AGGACGGAGACGTGCCCAAGGTGGCCGCTGCAGTGTGCCCACTGTACTCA
GCAGCAATGGCAGCGGCGGCAATGGAGCCCAGTACCTGCTGGACAAGAAA
ATGGAGTCACTGTATCTGGGTAACGCCCTGAGAACCCTTCCCTTAGGCGC
CGAAGCGAGTCAGTTCCAAAACGAACGCTACTACCTGGAGGATTACAGCA
GCGGCAGCGGGAACGAGCGACTGCCAGAACGCCTGCATCATCCGCGCACC
TCCAGTCCCAGCGAAACAAGTGGATCGGATCGCTACCTCCTAAACCGCAG
CTCCAACTCCAACCACCTGCACTCCAAGGGCCAGAGCCTCTCGGACGGGC
TGTGCAACCTGGGACGCTTCTCGCCCAGCTTGGATCAAGGCTACGCCACA
CTGGTCTCACCCTCTCCCACGGGTCACCATTCAAGTGGCGGAGCGGGCAA
TGTGACCAATTCTACCACAGCCAGTGGAGCGGGAATCATGGCAAGCAGTA
CGCCAACTACAACGCCGCGAAGAGGAGCCTCTAGCAATGGATTGGGAGGA
GGAGCAGCGTCCGCCATTGGACCGCCGCCCTGGAACCGCAAAGGTCCCTT
CCGCTGCGGTCCGCTCTTTGATCGTCTGCCCGACGAGGCCGTTGTACGGA
TCTTCTCATGGCTGGACAGCTGCGAGTTGTGCAACGTGGCGCGAGTCTGC
CGGAGATTCGAGCACCTCGCCTGGCGGCCCATCCTGTGGAAGGTGATCTC
GCTGCGGGGCGAGCACTTGAATGGCGACAAGACGCTGAAGATGATCTTCC
GCCAGCTTTGCGGCCAGAGCTGCAATGGCGCTTGTCCGGAAGTGGAGCGC
GTCATGCTCGCCGATGGCTGCCGCATCTCGGACAAGGGCCTTCAGCTCCT
CACGCGCCGCTGCCCCGAGTTGACCCACCTTCAGCTACAGACCTGCGTGG
ATATCACCAATCAGGCGCTGGTCGAGGCGCTGACCAAGTGCAGCAACCTG
CAGCATCTGGATGTGACGGGCTGCAGCCAGGTGAGCAGCATCAGTCCTAA
TCCCCACATGGAGCCACCGCGTCGCCTGCTGCTTCAATATCTGGACCTCA
CGGACTGCATGGCCATCGATGACATGGGTCTGAAGATCGTGGTCAAGAAC
TGCCCCCAGCTGGTTTACCTTTATCTGCGCCGCTGCATACAAGTCACAGA
TGCGGGTCTGAAGTTTGTGCCCAGTTTTTGCGTCTCGCTGAAGGAGCTCA
GTGTGTCCGACTGCCTGAACATCACAGATTTCGGATTGTATGAGTTGGCC
AAGCTGGGAGCCGCACTGCGCTACCTTTCCGTGGCCAAATGCGAGCGGGT
CTCGGATGCGGGGCTAAAGGTGATTGCCAGGCGGTGCTATAAGCTGCGCT
ATCTGAACGCTCGAGGATGTGAGGCCGTGAGCGATGACTCCATTACGGTC
CTGGCGAGATCCTGTCCACGTCTGCGAGCCTTGGACATCGGGAAGTGCGA
TGTGAGCGACGCGGGGCTTCGAGCTCTGGCCGAGAGCTGTCCGAACCTGA
AGAAGCTCAGCCTGCGCAGCTGCGACATGATCACGGACCGCGGGGTGCAG
TGTATCGCATATTATTGTCGCGGTCTCCAGCAACTGAATATCCAGGACTG
TCCGGTTTCCATCGAGGGCTACCGGGCGGTCAAGAAGTACTGCAAGCGCT
GCATCATCGAACACACAAATCCGGGATTCTGTTGAAAGCTTTCTAGACCA
T
BS10475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 2319 | CG4221-PA | 1..2319 | 17..2335 | 11595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-RA | 3176 | CG4221-RA | 473..2792 | 16..2335 | 11600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15929975..15930786 | 16..827 | 4060 | 100 | Plus |
| 3R | 32079331 | 3R | 15930840..15931636 | 824..1620 | 3985 | 100 | Plus |
| 3R | 32079331 | 3R | 15931966..15932503 | 1798..2335 | 2690 | 100 | Plus |
| 3R | 32079331 | 3R | 15931715..15931895 | 1619..1799 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:06:12 has no hits.
BS10475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:49 Download gff for
BS10475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 1..2319 | 17..2335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:25 Download gff for
BS10475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 454..2783 | 9..2341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:02 Download gff for
BS10475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 474..2791 | 17..2334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:07 Download gff for
BS10475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 459..2776 | 17..2334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:32 Download gff for
BS10475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4221-RA | 474..2791 | 17..2334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:32 Download gff for
BS10475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15929976..15930786 | 17..827 | 100 | -> | Plus |
| 3R | 15930844..15931635 | 828..1619 | 100 | -> | Plus |
| 3R | 15931716..15931895 | 1620..1799 | 100 | -> | Plus |
| 3R | 15931968..15932502 | 1800..2334 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:02 Download gff for
BS10475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11755698..11756508 | 17..827 | 100 | -> | Plus |
| arm_3R | 11756566..11757357 | 828..1619 | 100 | -> | Plus |
| arm_3R | 11757438..11757617 | 1620..1799 | 100 | -> | Plus |
| arm_3R | 11757690..11758224 | 1800..2334 | 100 | | Plus |
BS10475.pep Sequence
Translation from 16 to 2334
> BS10475.pep
MSHKTSNRRSSDLECPLASLGRNSNAVRDHYHHPHPLSSSPLDPQAYKMM
SRKSPNPGLEVAEALASRSSTPPSDQAGASSTAAAAAVLHMVQQKAATFE
LRGRHSRPTEQQTSYGAHSTASVGRHAKKSPELPAPASRNVAPVPQPRNF
LTLEHVLQFGTQRPSWMHGNSADTEDSSDNNAGGGGAGSGSGGAGGRRRA
QGGRCSVPTVLSSNGSGGNGAQYLLDKKMESLYLGNALRTLPLGAEASQF
QNERYYLEDYSSGSGNERLPERLHHPRTSSPSETSGSDRYLLNRSSNSNH
LHSKGQSLSDGLCNLGRFSPSLDQGYATLVSPSPTGHHSSGGAGNVTNST
TASGAGIMASSTPTTTPRRGASSNGLGGGAASAIGPPPWNRKGPFRCGPL
FDRLPDEAVVRIFSWLDSCELCNVARVCRRFEHLAWRPILWKVISLRGEH
LNGDKTLKMIFRQLCGQSCNGACPEVERVMLADGCRISDKGLQLLTRRCP
ELTHLQLQTCVDITNQALVEALTKCSNLQHLDVTGCSQVSSISPNPHMEP
PRRLLLQYLDLTDCMAIDDMGLKIVVKNCPQLVYLYLRRCIQVTDAGLKF
VPSFCVSLKELSVSDCLNITDFGLYELAKLGAALRYLSVAKCERVSDAGL
KVIARRCYKLRYLNARGCEAVSDDSITVLARSCPRLRALDIGKCDVSDAG
LRALAESCPNLKKLSLRSCDMITDRGVQCIAYYCRGLQQLNIQDCPVSIE
GYRAVKKYCKRCIIEHTNPGFC*
BS10475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4221-PA | 772 | CG4221-PA | 1..772 | 1..772 | 4080 | 100 | Plus |
| CG9003-PB | 651 | CG9003-PB | 14..604 | 169..745 | 443 | 26.9 | Plus |
| CG9003-PC | 426 | CG9003-PC | 14..379 | 400..745 | 402 | 28.7 | Plus |
| CG9003-PG | 437 | CG9003-PG | 25..390 | 400..745 | 402 | 28.7 | Plus |
| CG9003-PD | 437 | CG9003-PD | 25..390 | 400..745 | 402 | 28.7 | Plus |
