Clone BS10477 Report

Search the DGRC for BS10477

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptUbqn-RA
Protein status:BS10477.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10477.3prime Sequence

936 bp (839 high quality bases) assembled on 2006-04-19

> BS10477.3prime
ATGGTCTAGAAAGCTTTTAACTCAAGGACAACTGGTTGAGGGACAGCAGT
CGCTCTACCGCCGCATTGATGTCCCCGAAGGTAGCGATCAGAGCCTGCAA
GTTGGCATCACGGTTGACAAAGCCCATGGCGTTCAGCTGCTCCAGCTGCG
ACTGGTAGCGCACCTCCGGCGGCTGTGTGTTGTCCGCGTTGTTCGACATC
CCGTTGAGCATGCGCATCATGAAGTCGTTGAAGAGCTGCGCGTTGGGACC
ACCGCCCGGGGCCAGGTTTGGAGTGCCGGTGCCGGCGTTGAGGCCGCTGC
TTGGCGAAACATTGTTGGTGCTGGCACCGCTGTTGCCCCCGCTCCCATCG
CCGCTGGCTGGATTCGTTCCGGTGCCGGCACCCGGTGGTGGCGGTGGAAT
GCCCAGGGTGCCAACGAGACCTGGGGCCGCGCTGCGCAGCTGCTCCATGC
CCTGCTGGATCTGCAGGATAGCGTTCATTGCATCCGGATTGGTCAGCATG
TTCATCACCTCGGGGTTCTGCATTTGGGCCATAAACTGCGGCATCATCTG
ACGCACCTGCTCCTGCAGGGCGGGATTGTTAGACATGAGCGGACTGCTGC
TCAGCAAGCGCGCGGCCATGTCCGGGTCCTGTGACATGGACTCCATCATG
GAACGCGTGTAGGGCGCGTTCAGCAGGTTCTGCATCATGGCTGGATTGTC
GGCCATCTGCTGGAGCAGGCTTCGCATGGCCGGCGTGTTGAGCACATTGT
TCGGCGGCAGATCCCCCGTCGGATTGCCGGCGCCGGAGCCACCGACTGTT
CCATTGGTTCCCGAATTGGCACCGCCCCATGGATTCGGCAGGGGATTGCG
GTTCTCGGTGCCCTGCTGCGGGGTGTTGCCGGCTCCTGACCCGCCGGCGT
CGACCAGGCGGGAAAGGGGTTGCGACCAAAGGATTC

BS10477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14224-PA 1644 CG14224-RA 752..1644 909..17 4390 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn-RB 3429 CG14224-RB 917..1837 936..17 4520 99.5 Minus
Ubqn-RA 3011 CG14224-RA 917..1837 936..17 4520 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19685067..19685910 936..94 4110 99.4 Minus
X 23542271 X 19685989..19686066 94..17 390 100 Minus
Blast to na_te.dros performed 2015-02-10 17:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 3790..3837 242..192 113 72.5 Minus

BS10477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:14 Download gff for BS10477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14224-PA 724..1644 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:30 Download gff for BS10477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14224-PA 724..1644 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:21:34 Download gff for BS10477.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 917..1841 14..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:06 Download gff for BS10477.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 917..1841 14..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:06 Download gff for BS10477.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19685067..19685910 94..936 99 -> Minus
X 19685990..19686070 14..93 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:21:34 Download gff for BS10477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19579100..19579943 94..936 99 -> Minus
arm_X 19580023..19580103 14..93 98   Minus

BS10477.5prime Sequence

964 bp (788 high quality bases) assembled on 2006-04-19

> BS10477.5prime
GAAGTTATCAGTCGACATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGG
TTGTAAAAACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCT
GGAATAAAAGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCC
CGAGCAGCTCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACA
CCCTTCAGATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATT
AAGGCGCCGACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGT
GCGCCAAACGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGG
AGGCACTTGGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATG
CAGAACGAGCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAA
CCCGATGGTGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTA
TCACGTCCAATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATC
TCGCATATGCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGC
CCGCAATCCCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCA
TGTCGAATCTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATC
TACCGCGATATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGG
TCGCAACCCCTTTGCCGGCCTGGTCGACGGCGGCGGTTCAGGAGCCGGCA
ACAACCCGCAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCATGG
GGCGGTGCCAATTCGGGAACCNATGGAACAGTCGGTGGCTCCGGCGCCGG
CNATCCGACGGGGGATCTGCCGCCGAAACATGTGCTCAACACGCCGGGCA
TGCGAAGCCTGCTC

BS10477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14224-PA 1644 CG14224-RA 1..948 17..964 4627 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn-RB 3429 CG14224-RB 189..1141 12..964 4683 99.4 Plus
Ubqn-RA 3011 CG14224-RA 189..1141 12..964 4683 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19684440..19685291 113..964 4193 99.4 Plus
X 23542271 X 19683996..19684096 12..112 490 99 Plus
Blast to na_te.dros performed on 2015-02-10 04:50:56 has no hits.

BS10477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:15 Download gff for BS10477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14224-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:31 Download gff for BS10477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14224-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:33 Download gff for BS10477.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 187..1141 9..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:25:09 Download gff for BS10477.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 187..1141 9..964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:25:09 Download gff for BS10477.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19683994..19684096 11..112 97 -> Plus
X 19684440..19685291 113..964 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:33 Download gff for BS10477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19578027..19578129 11..112 97 -> Plus
arm_X 19578473..19579324 113..964 99   Plus

BS10477.complete Sequence

1676 bp (1676 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636680

> BS10477.complete
GAAGTTATCAGTCGACATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGG
TTGTAAAAACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCT
GGAATAAAAGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCC
CGAGCAGCTCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACA
CCCTTCAGATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATT
AAGGCGCCGACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGT
GCGCCAAACGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGG
AGGCACTTGGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATG
CAGAACGAGCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAA
CCCGATGGTGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTA
TCACGTCCAATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATC
TCGCATATGCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGC
CCGCAATCCCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCA
TGTCGAATCTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATC
TACCGCGATATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGG
TCGCAACCCCTTTGCCGGCCTGGTCGACGGCGGCGGTTCAGGAGCCGGCA
ACAACCCGCAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCATGG
GGCGGTGCCAATTCGGGAACCAATGGAACAGTCGGTGGCTCCGGCGCCGG
CAATCCGACGGGGGATCTGCCGCCGAACAATGTGCTCAACACGCCGGCCA
TGCGAAGCCTGCTCCAGCAGATGGCCGACAATCCAGCCATGATGCAGAAC
CTGCTGAACGCGCCCTACACGCGTTCCATGATGGAGTCCATGTCACAGGA
CCCGGACATGGCCGCGCGCTTGCTGAGCAGCAGTCCGCTCATGTCTAACA
ATCCCGCCCTGCAGGAGCAGGTGCGTCAGATGATGCCGCAGTTTATGGCC
CAAATGCAGAACCCCGAGGTGATGAACATGCTGACCAATCCGGATGCAAT
GAACGCTATCCTGCAGATCCAGCAGGGCATGGAGCAGCTGCGCAGCGCGG
CCCCAGGTCTCGTTGGCACCCTGGGCATTCCACCGCCACCACCGGGTGCC
GGCACCGGAACGAATCCAGCCAGCGGCGATGGGAGCGGGGGCAACAGCGG
TGCCAGCACCAACAATGTTTCGCCAAGCAGCGGCCTCAACGCCGGCACCG
GCACTCCAAACCTGGCCCCGGGCGGTGGTCCCAACGCGCAGCTCTTCAAC
GACTTCATGATGCGCATGCTCAACGGGATGTCGAACAACGCGGACAACAC
ACAGCCGCCGGAGGTGCGCTACCAGTCGCAGCTGGAGCAGCTGAACGCCA
TGGGCTTTGTCAACCGTGATGCCAACTTGCAGGCTCTGATCGCTACCTTC
GGGGACATCAATGCGGCGGTAGAGCGACTGCTGTCCCTCAACCAGTTGTC
CTTGAGTTAAAAGCTTTCTAGACCAT

BS10477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn-RB 1644 CG14224-PB 1..1644 17..1660 8220 100 Plus
Ubqn-RA 1644 CG14224-PA 1..1644 17..1660 8220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn-RB 3429 CG14224-RB 189..1837 12..1660 8230 99.9 Plus
Ubqn-RA 3011 CG14224-RA 189..1837 12..1660 8230 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19684440..19685910 113..1583 7355 100 Plus
X 23542271 X 19683996..19684096 12..112 490 99 Plus
X 23542271 X 19685989..19686066 1583..1660 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:42:00 has no hits.

BS10477.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:04 Download gff for BS10477.complete
Subject Subject Range Query Range Percent Splice Strand
CG14224-RA 1..1644 17..1660 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:30 Download gff for BS10477.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 247..1901 9..1663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:11 Download gff for BS10477.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 194..1835 17..1658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:04 Download gff for BS10477.complete
Subject Subject Range Query Range Percent Splice Strand
CG14224-RA 247..1901 9..1663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:03 Download gff for BS10477.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 194..1835 17..1658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:03 Download gff for BS10477.complete
Subject Subject Range Query Range Percent Splice Strand
X 19684001..19684096 17..112 100 -> Plus
X 19684440..19685910 113..1583 100 -> Plus
X 19685990..19686064 1584..1658 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:11 Download gff for BS10477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19578034..19578129 17..112 100 -> Plus
arm_X 19578473..19579943 113..1583 100 -> Plus
arm_X 19580023..19580097 1584..1658 100   Plus

BS10477.pep Sequence

Translation from 16 to 1659

> BS10477.pep
MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLVL
IFAGKIMKDTDTLQMHNIKDNLTVHLVIKAPTRNNEQPARQPADVRQTPF
GLNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQ
MMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSM
LQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMMNAATESFGRNPFA
GLVDGGGSGAGNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTGD
LPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAA
RLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNPDAMNAILQ
IQQGMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTNN
VSPSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEV
RYQSQLEQLNAMGFVNRDANLQALIATFGDINAAVERLLSLNQLSLS*

BS10477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn-PB 547 CG14224-PB 1..547 1..547 2828 100 Plus
Ubqn-PA 547 CG14224-PA 1..547 1..547 2828 100 Plus
CG31528-PA 344 CG31528-PA 7..232 9..278 273 27.3 Plus