Clone Sequence Records
BS10477.3prime Sequence
936 bp (839 high quality bases) assembled on 2006-04-19
> BS10477.3prime
ATGGTCTAGAAAGCTTTTAACTCAAGGACAACTGGTTGAGGGACAGCAGT
CGCTCTACCGCCGCATTGATGTCCCCGAAGGTAGCGATCAGAGCCTGCAA
GTTGGCATCACGGTTGACAAAGCCCATGGCGTTCAGCTGCTCCAGCTGCG
ACTGGTAGCGCACCTCCGGCGGCTGTGTGTTGTCCGCGTTGTTCGACATC
CCGTTGAGCATGCGCATCATGAAGTCGTTGAAGAGCTGCGCGTTGGGACC
ACCGCCCGGGGCCAGGTTTGGAGTGCCGGTGCCGGCGTTGAGGCCGCTGC
TTGGCGAAACATTGTTGGTGCTGGCACCGCTGTTGCCCCCGCTCCCATCG
CCGCTGGCTGGATTCGTTCCGGTGCCGGCACCCGGTGGTGGCGGTGGAAT
GCCCAGGGTGCCAACGAGACCTGGGGCCGCGCTGCGCAGCTGCTCCATGC
CCTGCTGGATCTGCAGGATAGCGTTCATTGCATCCGGATTGGTCAGCATG
TTCATCACCTCGGGGTTCTGCATTTGGGCCATAAACTGCGGCATCATCTG
ACGCACCTGCTCCTGCAGGGCGGGATTGTTAGACATGAGCGGACTGCTGC
TCAGCAAGCGCGCGGCCATGTCCGGGTCCTGTGACATGGACTCCATCATG
GAACGCGTGTAGGGCGCGTTCAGCAGGTTCTGCATCATGGCTGGATTGTC
GGCCATCTGCTGGAGCAGGCTTCGCATGGCCGGCGTGTTGAGCACATTGT
TCGGCGGCAGATCCCCCGTCGGATTGCCGGCGCCGGAGCCACCGACTGTT
CCATTGGTTCCCGAATTGGCACCGCCCCATGGATTCGGCAGGGGATTGCG
GTTCTCGGTGCCCTGCTGCGGGGTGTTGCCGGCTCCTGACCCGCCGGCGT
CGACCAGGCGGGAAAGGGGTTGCGACCAAAGGATTC
BS10477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14224-PA | 1644 | CG14224-RA | 752..1644 | 909..17 | 4390 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 3429 | CG14224-RB | 917..1837 | 936..17 | 4520 | 99.5 | Minus |
Ubqn-RA | 3011 | CG14224-RA | 917..1837 | 936..17 | 4520 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19685067..19685910 | 936..94 | 4110 | 99.4 | Minus |
X | 23542271 | X | 19685989..19686066 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 3790..3837 | 242..192 | 113 | 72.5 | Minus |
BS10477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:14 Download gff for
BS10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 724..1644 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:30 Download gff for
BS10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 724..1644 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:21:34 Download gff for
BS10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 917..1841 | 14..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:06 Download gff for
BS10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 917..1841 | 14..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:06 Download gff for
BS10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19685067..19685910 | 94..936 | 99 | -> | Minus |
X | 19685990..19686070 | 14..93 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:21:34 Download gff for
BS10477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19579100..19579943 | 94..936 | 99 | -> | Minus |
arm_X | 19580023..19580103 | 14..93 | 98 | | Minus |
BS10477.5prime Sequence
964 bp (788 high quality bases) assembled on 2006-04-19
> BS10477.5prime
GAAGTTATCAGTCGACATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGG
TTGTAAAAACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCT
GGAATAAAAGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCC
CGAGCAGCTCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACA
CCCTTCAGATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATT
AAGGCGCCGACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGT
GCGCCAAACGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGG
AGGCACTTGGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATG
CAGAACGAGCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAA
CCCGATGGTGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTA
TCACGTCCAATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATC
TCGCATATGCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGC
CCGCAATCCCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCA
TGTCGAATCTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATC
TACCGCGATATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGG
TCGCAACCCCTTTGCCGGCCTGGTCGACGGCGGCGGTTCAGGAGCCGGCA
ACAACCCGCAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCATGG
GGCGGTGCCAATTCGGGAACCNATGGAACAGTCGGTGGCTCCGGCGCCGG
CNATCCGACGGGGGATCTGCCGCCGAAACATGTGCTCAACACGCCGGGCA
TGCGAAGCCTGCTC
BS10477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14224-PA | 1644 | CG14224-RA | 1..948 | 17..964 | 4627 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 3429 | CG14224-RB | 189..1141 | 12..964 | 4683 | 99.4 | Plus |
Ubqn-RA | 3011 | CG14224-RA | 189..1141 | 12..964 | 4683 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19684440..19685291 | 113..964 | 4193 | 99.4 | Plus |
X | 23542271 | X | 19683996..19684096 | 12..112 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:50:56 has no hits.
BS10477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:15 Download gff for
BS10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:31 Download gff for
BS10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:33 Download gff for
BS10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 187..1141 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:25:09 Download gff for
BS10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 187..1141 | 9..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:25:09 Download gff for
BS10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19683994..19684096 | 11..112 | 97 | -> | Plus |
X | 19684440..19685291 | 113..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:33 Download gff for
BS10477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19578027..19578129 | 11..112 | 97 | -> | Plus |
arm_X | 19578473..19579324 | 113..964 | 99 | | Plus |
BS10477.complete Sequence
1676 bp (1676 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636680
> BS10477.complete
GAAGTTATCAGTCGACATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGG
TTGTAAAAACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCT
GGAATAAAAGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCC
CGAGCAGCTCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACA
CCCTTCAGATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATT
AAGGCGCCGACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGT
GCGCCAAACGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGG
AGGCACTTGGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATG
CAGAACGAGCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAA
CCCGATGGTGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTA
TCACGTCCAATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATC
TCGCATATGCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGC
CCGCAATCCCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCA
TGTCGAATCTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATC
TACCGCGATATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGG
TCGCAACCCCTTTGCCGGCCTGGTCGACGGCGGCGGTTCAGGAGCCGGCA
ACAACCCGCAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCATGG
GGCGGTGCCAATTCGGGAACCAATGGAACAGTCGGTGGCTCCGGCGCCGG
CAATCCGACGGGGGATCTGCCGCCGAACAATGTGCTCAACACGCCGGCCA
TGCGAAGCCTGCTCCAGCAGATGGCCGACAATCCAGCCATGATGCAGAAC
CTGCTGAACGCGCCCTACACGCGTTCCATGATGGAGTCCATGTCACAGGA
CCCGGACATGGCCGCGCGCTTGCTGAGCAGCAGTCCGCTCATGTCTAACA
ATCCCGCCCTGCAGGAGCAGGTGCGTCAGATGATGCCGCAGTTTATGGCC
CAAATGCAGAACCCCGAGGTGATGAACATGCTGACCAATCCGGATGCAAT
GAACGCTATCCTGCAGATCCAGCAGGGCATGGAGCAGCTGCGCAGCGCGG
CCCCAGGTCTCGTTGGCACCCTGGGCATTCCACCGCCACCACCGGGTGCC
GGCACCGGAACGAATCCAGCCAGCGGCGATGGGAGCGGGGGCAACAGCGG
TGCCAGCACCAACAATGTTTCGCCAAGCAGCGGCCTCAACGCCGGCACCG
GCACTCCAAACCTGGCCCCGGGCGGTGGTCCCAACGCGCAGCTCTTCAAC
GACTTCATGATGCGCATGCTCAACGGGATGTCGAACAACGCGGACAACAC
ACAGCCGCCGGAGGTGCGCTACCAGTCGCAGCTGGAGCAGCTGAACGCCA
TGGGCTTTGTCAACCGTGATGCCAACTTGCAGGCTCTGATCGCTACCTTC
GGGGACATCAATGCGGCGGTAGAGCGACTGCTGTCCCTCAACCAGTTGTC
CTTGAGTTAAAAGCTTTCTAGACCAT
BS10477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 1644 | CG14224-PB | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Ubqn-RA | 1644 | CG14224-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-RB | 3429 | CG14224-RB | 189..1837 | 12..1660 | 8230 | 99.9 | Plus |
Ubqn-RA | 3011 | CG14224-RA | 189..1837 | 12..1660 | 8230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19684440..19685910 | 113..1583 | 7355 | 100 | Plus |
X | 23542271 | X | 19683996..19684096 | 12..112 | 490 | 99 | Plus |
X | 23542271 | X | 19685989..19686066 | 1583..1660 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:42:00 has no hits.
BS10477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:04 Download gff for
BS10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-RA | 1..1644 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:30 Download gff for
BS10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 247..1901 | 9..1663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:11 Download gff for
BS10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 194..1835 | 17..1658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:04 Download gff for
BS10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14224-RA | 247..1901 | 9..1663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:03 Download gff for
BS10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubqn-RA | 194..1835 | 17..1658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:03 Download gff for
BS10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19684001..19684096 | 17..112 | 100 | -> | Plus |
X | 19684440..19685910 | 113..1583 | 100 | -> | Plus |
X | 19685990..19686064 | 1584..1658 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:11 Download gff for
BS10477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19578034..19578129 | 17..112 | 100 | -> | Plus |
arm_X | 19578473..19579943 | 113..1583 | 100 | -> | Plus |
arm_X | 19580023..19580097 | 1584..1658 | 100 | | Plus |
BS10477.pep Sequence
Translation from 16 to 1659
> BS10477.pep
MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLVL
IFAGKIMKDTDTLQMHNIKDNLTVHLVIKAPTRNNEQPARQPADVRQTPF
GLNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQ
MMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSM
LQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMMNAATESFGRNPFA
GLVDGGGSGAGNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTGD
LPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAA
RLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNPDAMNAILQ
IQQGMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTNN
VSPSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEV
RYQSQLEQLNAMGFVNRDANLQALIATFGDINAAVERLLSLNQLSLS*
BS10477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubqn-PB | 547 | CG14224-PB | 1..547 | 1..547 | 2828 | 100 | Plus |
Ubqn-PA | 547 | CG14224-PA | 1..547 | 1..547 | 2828 | 100 | Plus |
CG31528-PA | 344 | CG31528-PA | 7..232 | 9..278 | 273 | 27.3 | Plus |