Clone BS10478 Report

Search the DGRC for BS10478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG6678-RA
Protein status:BS10478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10478.3prime Sequence

948 bp (893 high quality bases) assembled on 2006-04-19

> BS10478.3prime
ATGGTCTAGAAAGCTTCTAAGCCGTACACTTCAAATGGAGCAGCGTTGAC
CATGGCCCACAGAGAACATCATCCACAGTAGGGTTCATCGTGATACCTTC
CAGGGCCTGAAAAGCATCCACATAGGACAGGTCTTGGAGCTGCCTGCCAA
GTTGACCGTGCTTGCACCAACCACTGACCCATAGCCGCCCGCATCGGCGG
ATCAGCAGAGTGTGACGAGATCCAGCAAACACCCTCAGCGGTGCGCAATC
ATCGTTGCTCTCCCCGCTTTGGGAGCAGGCACATTCGGGCAGATCTTGCA
ACTGGGGCAGCGGAAATACAGTGGGCTCTTTGAGGACGCCACCGGGTTTC
ATCACACGCAATCCCAGCTGACCGCTGCAGTTGAGGCCCCAGGTGTAGAG
GTCTCCAAAGGCGGATATGGCCGCACTGTGCCAACCACCGGCAGCAATTT
GAGTTATCTTGATCCCCGCCAGCGCCTCCAGCAATTGAGGCGTCTCCTCC
ACTCTCAGTTCCGCCAGACCCAACTGTCCGCGTAGTCCATTTCCCCAGGT
GAACACGTCGCCATTGGCATTGAGGAGCACGGCATGTTCATGGCCGCATT
GGAGCTGCTTCACCCGAAATTGGCGCTCGGAAAACTGATGCAGGCAGCTG
GGAATGCTGTAGACACAGTTTTCCGAACTTATCGCTACGTTTATGTGCGA
TCCACATGCAATATGCTCTATGATCGGCGACGAAGGCGCCTTGGCAGCCC
CAAAGATAGAGCGCTTTGTACCCGAATTGGATCTGGGAGCAGCTTCTAGT
CTAACAGCCACCAGTTCCGCTTGCAGTTTTGGTTGCACCCCTGTAAGCTG
ACCGCTTTGGAGTAGCACCAGGCAGTGGGAATCGGCAGCGGCAAGGGCCC
TTATGTTCCCCGTTGCTTCAGGGTCACGCACTCATTTTGGCCATCATC

BS10478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-PA 1122 CG6678-RA 299..1122 840..17 4120 100 Minus
CG6678-PA 1122 CG6678-RA 220..294 919..845 375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 2843 CG6678-RA 668..1600 948..17 4580 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21888837..21889267 459..29 2155 100 Minus
3R 32079331 3R 21888139..21888554 948..534 1955 98.6 Minus
3R 32079331 3R 21888703..21888778 533..458 380 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:51:12 has no hits.

BS10478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:17 Download gff for BS10478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 190..1122 17..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:33 Download gff for BS10478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 190..1122 17..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:25 Download gff for BS10478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 668..1603 14..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:25 Download gff for BS10478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 668..1603 14..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:25 Download gff for BS10478.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21888139..21888554 534..948 99 -> Minus
3R 21888703..21888778 458..533 100 -> Minus
3R 21888839..21889267 29..457 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:25 Download gff for BS10478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17713861..17714276 534..948 99 -> Minus
arm_3R 17714425..17714500 458..533 100 -> Minus
arm_3R 17714561..17714989 29..457 100 -> Minus

BS10478.5prime Sequence

952 bp (807 high quality bases) assembled on 2006-04-19

> BS10478.5prime
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAGAGCAA
CGATGATTGCGCACCGCTGAGGGTGTTTGCTGGATCTCGTCACACTCTGC
TG

BS10478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-PA 1122 CG6678-RA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 2843 CG6678-RA 479..1414 17..952 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21888034..21888554 101..621 2605 100 Plus
3R 32079331 3R 21888837..21889093 696..952 1285 100 Plus
3R 32079331 3R 21887507..21887591 17..101 425 100 Plus
3R 32079331 3R 21888703..21888778 622..697 380 100 Plus
Blast to na_te.dros performed on 2015-02-02 13:09:39 has no hits.

BS10478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:18 Download gff for BS10478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 1..936 17..952 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:35 Download gff for BS10478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-PA 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:07:08 Download gff for BS10478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 474..1414 10..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:31 Download gff for BS10478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 474..1414 10..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:31 Download gff for BS10478.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21888703..21888778 622..697 100 -> Plus
3R 21888035..21888554 102..621 100 -> Plus
3R 21887502..21887591 10..101 95 -> Plus
3R 21888839..21889093 698..952 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:07:08 Download gff for BS10478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17713224..17713313 10..101 95 -> Plus
arm_3R 17713757..17714276 102..621 100 -> Plus
arm_3R 17714425..17714500 622..697 100 -> Plus
arm_3R 17714561..17714815 698..952 100   Plus

BS10478.complete Sequence

1154 bp (1154 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636681

> BS10478.complete
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAGAGCAA
CGATGATTGCGCACCGCTGAGGGTGTTTGCTGGATCTCGTCACACTCTGC
TGATCCGCCGATGCGGGCGGCTATGGGTCAGTGGTTGGTGCAAGCACGGT
CAACTTGGCAGGCAGCTCCAAGACCTGTCCTATGTGGATGCTTTTCAGGC
CCTGGAAGGTATCACGATGAACCCTACTGTGGATGATGTTCTCTGTGGGC
CATGGTCAACGCTGCTCCATTTGAAGTGTACGGCTTAGAAGCTTTCTAGA
CCAT

BS10478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 1122 CG6678-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-RA 2843 CG6678-RA 479..1600 17..1138 5610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21888034..21888554 101..621 2605 100 Plus
3R 32079331 3R 21888837..21889267 696..1126 2155 100 Plus
3R 32079331 3R 21887507..21887591 17..101 425 100 Plus
3R 32079331 3R 21888703..21888778 622..697 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:55:15 has no hits.

BS10478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:05 Download gff for BS10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 1..1122 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:43 Download gff for BS10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 467..1588 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:47 Download gff for BS10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 479..1600 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:05 Download gff for BS10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 462..1591 10..1141 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:56 Download gff for BS10478.complete
Subject Subject Range Query Range Percent Splice Strand
CG6678-RA 479..1600 17..1138 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:56 Download gff for BS10478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21887507..21887591 17..101 100 -> Plus
3R 21888035..21888554 102..621 100 -> Plus
3R 21888703..21888778 622..697 100 -> Plus
3R 21888839..21889267 698..1126 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:47 Download gff for BS10478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17713229..17713313 17..101 100 -> Plus
arm_3R 17713757..17714276 102..621 100 -> Plus
arm_3R 17714425..17714500 622..697 100 -> Plus
arm_3R 17714561..17714989 698..1126 100 -> Plus

BS10478.pep Sequence

Translation from 16 to 1137

> BS10478.pep
MPLLFTGFNAFGQHECVSGDVDCAAGFSELNAPVSTQNQCTISIGWRYAA
LAFGRKLCLRGLLDDGPNECVTLEATGNIRALAAADSHCLVLLQSGQLYR
VQPKLQAELVAVRLEAAPRSNSGTKRSIFGAAKAPSSPIIEHIACGSHIN
VAISSENCVYSIPSCLHQFSERQFRVKQLQCGHEHAVLLNANGDVFTWGN
GLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTW
GLNCSGQLGLRVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAP
LRVFAGSRHTLLIRRCGRLWVSGWCKHGQLGRQLQDLSYVDAFQALEGIT
MNPTVDDVLCGPWSTLLHLKCTA*

BS10478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6678-PA 373 CG6678-PA 1..373 1..373 1983 100 Plus
HERC2-PC 4912 CG11734-PC 3069..3158 172..259 193 46.7 Plus
CG9153-PA 1058 CG9153-PA 42..231 140..331 179 26.8 Plus
CG9153-PB 1058 CG9153-PB 42..231 140..331 179 26.8 Plus
CG9153-PC 1062 CG9153-PC 93..236 172..331 174 30.4 Plus
CG9153-PA 1058 CG9153-PA 142..385 76..312 169 27.6 Plus
CG9153-PB 1058 CG9153-PB 142..385 76..312 169 27.6 Plus
HERC2-PC 4912 CG11734-PC 4122..4221 160..259 167 35 Plus
HERC2-PC 4912 CG11734-PC 3127..3316 140..331 166 27.5 Plus
HERC2-PC 4912 CG11734-PC 4296..4379 176..259 164 41.7 Plus
HERC2-PC 4912 CG11734-PC 3123..3264 172..331 156 24.7 Plus