Clone Sequence Records
BS10478.3prime Sequence
948 bp (893 high quality bases) assembled on 2006-04-19
> BS10478.3prime
ATGGTCTAGAAAGCTTCTAAGCCGTACACTTCAAATGGAGCAGCGTTGAC
CATGGCCCACAGAGAACATCATCCACAGTAGGGTTCATCGTGATACCTTC
CAGGGCCTGAAAAGCATCCACATAGGACAGGTCTTGGAGCTGCCTGCCAA
GTTGACCGTGCTTGCACCAACCACTGACCCATAGCCGCCCGCATCGGCGG
ATCAGCAGAGTGTGACGAGATCCAGCAAACACCCTCAGCGGTGCGCAATC
ATCGTTGCTCTCCCCGCTTTGGGAGCAGGCACATTCGGGCAGATCTTGCA
ACTGGGGCAGCGGAAATACAGTGGGCTCTTTGAGGACGCCACCGGGTTTC
ATCACACGCAATCCCAGCTGACCGCTGCAGTTGAGGCCCCAGGTGTAGAG
GTCTCCAAAGGCGGATATGGCCGCACTGTGCCAACCACCGGCAGCAATTT
GAGTTATCTTGATCCCCGCCAGCGCCTCCAGCAATTGAGGCGTCTCCTCC
ACTCTCAGTTCCGCCAGACCCAACTGTCCGCGTAGTCCATTTCCCCAGGT
GAACACGTCGCCATTGGCATTGAGGAGCACGGCATGTTCATGGCCGCATT
GGAGCTGCTTCACCCGAAATTGGCGCTCGGAAAACTGATGCAGGCAGCTG
GGAATGCTGTAGACACAGTTTTCCGAACTTATCGCTACGTTTATGTGCGA
TCCACATGCAATATGCTCTATGATCGGCGACGAAGGCGCCTTGGCAGCCC
CAAAGATAGAGCGCTTTGTACCCGAATTGGATCTGGGAGCAGCTTCTAGT
CTAACAGCCACCAGTTCCGCTTGCAGTTTTGGTTGCACCCCTGTAAGCTG
ACCGCTTTGGAGTAGCACCAGGCAGTGGGAATCGGCAGCGGCAAGGGCCC
TTATGTTCCCCGTTGCTTCAGGGTCACGCACTCATTTTGGCCATCATC
BS10478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-PA | 1122 | CG6678-RA | 299..1122 | 840..17 | 4120 | 100 | Minus |
CG6678-PA | 1122 | CG6678-RA | 220..294 | 919..845 | 375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 2843 | CG6678-RA | 668..1600 | 948..17 | 4580 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21888837..21889267 | 459..29 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 21888139..21888554 | 948..534 | 1955 | 98.6 | Minus |
3R | 32079331 | 3R | 21888703..21888778 | 533..458 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:51:12 has no hits.
BS10478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:17 Download gff for
BS10478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 190..1122 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:33 Download gff for
BS10478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 190..1122 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:25 Download gff for
BS10478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 668..1603 | 14..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:25 Download gff for
BS10478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 668..1603 | 14..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:25 Download gff for
BS10478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21888139..21888554 | 534..948 | 99 | -> | Minus |
3R | 21888703..21888778 | 458..533 | 100 | -> | Minus |
3R | 21888839..21889267 | 29..457 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:25 Download gff for
BS10478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17713861..17714276 | 534..948 | 99 | -> | Minus |
arm_3R | 17714425..17714500 | 458..533 | 100 | -> | Minus |
arm_3R | 17714561..17714989 | 29..457 | 100 | -> | Minus |
BS10478.5prime Sequence
952 bp (807 high quality bases) assembled on 2006-04-19
> BS10478.5prime
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAGAGCAA
CGATGATTGCGCACCGCTGAGGGTGTTTGCTGGATCTCGTCACACTCTGC
TG
BS10478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-PA | 1122 | CG6678-RA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 2843 | CG6678-RA | 479..1414 | 17..952 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21888034..21888554 | 101..621 | 2605 | 100 | Plus |
3R | 32079331 | 3R | 21888837..21889093 | 696..952 | 1285 | 100 | Plus |
3R | 32079331 | 3R | 21887507..21887591 | 17..101 | 425 | 100 | Plus |
3R | 32079331 | 3R | 21888703..21888778 | 622..697 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 13:09:39 has no hits.
BS10478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:18 Download gff for
BS10478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:35 Download gff for
BS10478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:07:08 Download gff for
BS10478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 474..1414 | 10..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:31 Download gff for
BS10478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 474..1414 | 10..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:31 Download gff for
BS10478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21888703..21888778 | 622..697 | 100 | -> | Plus |
3R | 21888035..21888554 | 102..621 | 100 | -> | Plus |
3R | 21887502..21887591 | 10..101 | 95 | -> | Plus |
3R | 21888839..21889093 | 698..952 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:07:08 Download gff for
BS10478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17713224..17713313 | 10..101 | 95 | -> | Plus |
arm_3R | 17713757..17714276 | 102..621 | 100 | -> | Plus |
arm_3R | 17714425..17714500 | 622..697 | 100 | -> | Plus |
arm_3R | 17714561..17714815 | 698..952 | 100 | | Plus |
BS10478.complete Sequence
1154 bp (1154 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636681
> BS10478.complete
GAAGTTATCAGTCGACATGCCGCTGCTATTTACGGGCTTCAACGCATTTG
GCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGC
GAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGG
CTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGC
TCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAAC
ATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAG
CGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTG
TTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATC
TTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATG
TGGATCGCACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCA
TTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAG
CTCCAATGCGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGT
GTTCACCTGGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGA
GAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATA
ACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGG
AGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTG
TGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTGTATTTCCGCTGCCC
CAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAAAGCGGGGAGAGCAA
CGATGATTGCGCACCGCTGAGGGTGTTTGCTGGATCTCGTCACACTCTGC
TGATCCGCCGATGCGGGCGGCTATGGGTCAGTGGTTGGTGCAAGCACGGT
CAACTTGGCAGGCAGCTCCAAGACCTGTCCTATGTGGATGCTTTTCAGGC
CCTGGAAGGTATCACGATGAACCCTACTGTGGATGATGTTCTCTGTGGGC
CATGGTCAACGCTGCTCCATTTGAAGTGTACGGCTTAGAAGCTTTCTAGA
CCAT
BS10478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 1122 | CG6678-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-RA | 2843 | CG6678-RA | 479..1600 | 17..1138 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21888034..21888554 | 101..621 | 2605 | 100 | Plus |
3R | 32079331 | 3R | 21888837..21889267 | 696..1126 | 2155 | 100 | Plus |
3R | 32079331 | 3R | 21887507..21887591 | 17..101 | 425 | 100 | Plus |
3R | 32079331 | 3R | 21888703..21888778 | 622..697 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:55:15 has no hits.
BS10478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:05 Download gff for
BS10478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 1..1122 | 17..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:43 Download gff for
BS10478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 467..1588 | 17..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:47 Download gff for
BS10478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 479..1600 | 17..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:05 Download gff for
BS10478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 462..1591 | 10..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:56 Download gff for
BS10478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6678-RA | 479..1600 | 17..1138 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:56 Download gff for
BS10478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21887507..21887591 | 17..101 | 100 | -> | Plus |
3R | 21888035..21888554 | 102..621 | 100 | -> | Plus |
3R | 21888703..21888778 | 622..697 | 100 | -> | Plus |
3R | 21888839..21889267 | 698..1126 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:47 Download gff for
BS10478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17713229..17713313 | 17..101 | 100 | -> | Plus |
arm_3R | 17713757..17714276 | 102..621 | 100 | -> | Plus |
arm_3R | 17714425..17714500 | 622..697 | 100 | -> | Plus |
arm_3R | 17714561..17714989 | 698..1126 | 100 | -> | Plus |
BS10478.pep Sequence
Translation from 16 to 1137
> BS10478.pep
MPLLFTGFNAFGQHECVSGDVDCAAGFSELNAPVSTQNQCTISIGWRYAA
LAFGRKLCLRGLLDDGPNECVTLEATGNIRALAAADSHCLVLLQSGQLYR
VQPKLQAELVAVRLEAAPRSNSGTKRSIFGAAKAPSSPIIEHIACGSHIN
VAISSENCVYSIPSCLHQFSERQFRVKQLQCGHEHAVLLNANGDVFTWGN
GLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTW
GLNCSGQLGLRVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAP
LRVFAGSRHTLLIRRCGRLWVSGWCKHGQLGRQLQDLSYVDAFQALEGIT
MNPTVDDVLCGPWSTLLHLKCTA*
BS10478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6678-PA | 373 | CG6678-PA | 1..373 | 1..373 | 1983 | 100 | Plus |
HERC2-PC | 4912 | CG11734-PC | 3069..3158 | 172..259 | 193 | 46.7 | Plus |
CG9153-PA | 1058 | CG9153-PA | 42..231 | 140..331 | 179 | 26.8 | Plus |
CG9153-PB | 1058 | CG9153-PB | 42..231 | 140..331 | 179 | 26.8 | Plus |
CG9153-PC | 1062 | CG9153-PC | 93..236 | 172..331 | 174 | 30.4 | Plus |
CG9153-PA | 1058 | CG9153-PA | 142..385 | 76..312 | 169 | 27.6 | Plus |
CG9153-PB | 1058 | CG9153-PB | 142..385 | 76..312 | 169 | 27.6 | Plus |
HERC2-PC | 4912 | CG11734-PC | 4122..4221 | 160..259 | 167 | 35 | Plus |
HERC2-PC | 4912 | CG11734-PC | 3127..3316 | 140..331 | 166 | 27.5 | Plus |
HERC2-PC | 4912 | CG11734-PC | 4296..4379 | 176..259 | 164 | 41.7 | Plus |
HERC2-PC | 4912 | CG11734-PC | 3123..3264 | 172..331 | 156 | 24.7 | Plus |