Clone BS10480 Report

Search the DGRC for BS10480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptAlh-RB
Protein status:BS10480.pep: full length peptide match
Sequenced Size:2507

Clone Sequence Records

BS10480.3prime Sequence

925 bp (847 high quality bases) assembled on 2006-04-19

> BS10480.3prime
ATGGTCTAGAAAGCTTTTACTTACCATGCGCCTCGGCCTTGGTGTTGCTT
GCGATGGTACTCAGCGGGATCTGCAGGCGCGCATTGACCGCCAGCAGGTG
ATCACGTCGCGCTATCAGGCTGGTCACATGCTCCTCCAGCCGGAGGTTTT
CGCTCTGCAGCTGGTGCAAGCAATTAAGCAGCGAGGCAATGTCAAAGTGC
TGCGCTTGCTCCATGAGAAACTGCGAGCCCTGCTCCCACTGGCGCTCCAG
CAGCTGCTCCAGACTTTGCGGAATGGGCATGTTGCCGTTCATGCCGCCAC
CGCTGAACATCGATTGCAGCGGATTTTGAGCTGGCGTGGCGTTGCTAGGA
ACGGCAGTGGAGTTACGCTGCTTGCCGGGGAACGGAACTCCGGCGTATTG
CGAGTTCATTGAATCGGGAGTGTAGATCGAGTGATCCTGGACCTCCATGT
GCAGCTGCTCGGACAGCTTCTGGGCCACGCTGCTGTTTGGGTTGATCTGG
TTGCCCAGCATATGCGCGGCCGTGTGTGTAATGATCGAACTGGCTGAGCT
GACAGCATTAGACGAAGCGGGAGTAGCAGGAGGCGTTGGTGTGCTGCCAG
CTGGATTGCCCGGTGTATTGCTCGCCCCATTCTGGAGTATGCGCACATCC
TTGAGATCCTGTTGAGAATTGCTGAGAGCAGCTGCTGCTGCCGCTGCCGC
CGCTGCAGCAGCTATCGTCGCATCTTTGGCCTTGCGTCCACGCTTCCGTA
CATTTCCAGGTTGAGCAGTCGCCGCTGTCGAAGCTCCAGTCAGGGAACCG
GGTGCAGTAGTTGCGGAGTGCATGGCCGATCCTATCTCTGAGCCGGGCGA
ACTGGGCGGGGAATCCTTTATGGCGCTCACAGGCATCATGGGCACGTCCA
TCTGGGTCTGACTCTCGTANGTAAA

BS10480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1070-PA 4131 Alh-RA 3223..4131 925..17 4526 99.8 Minus
CG1070-PD 3972 Alh-RD 3064..3972 925..17 4526 99.8 Minus
CG1070-PB 2475 Alh-RB 1567..2475 925..17 4526 99.8 Minus
CG1070-PC 2931 Alh-RC 1567..2467 925..25 4486 99.8 Minus
CG8246-PA 1278 Poxn-RA 441..467 713..687 135 100 Minus
CG32180-PA 2490 Eip74EF-RA 1921..1947 709..683 135 100 Minus
CG32180-PC 2607 Eip74EF-RC 2038..2064 709..683 135 100 Minus
CG32180-PB 2652 Eip74EF-RB 2083..2109 709..683 135 100 Minus
CG32180-PD 2652 Eip74EF-RD 2083..2109 709..683 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RP 6029 CG1070-RP 4493..5401 925..17 4534 99.9 Minus
Alh-RL 4850 CG1070-RL 3314..4222 925..17 4534 99.9 Minus
Alh-RK 5033 CG1070-RK 3497..4405 925..17 4534 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7098826..7099383 368..925 2779 99.8 Plus
3R 32079331 3R 7098555..7098735 190..370 905 100 Plus
3R 32079331 3R 7098311..7098483 17..189 865 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:44:52 has no hits.

BS10480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:19 Download gff for BS10480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1070-PA 3226..4131 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:36 Download gff for BS10480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1070-PB 1570..2475 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:27 Download gff for BS10480.3prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RK 3500..4408 14..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:11 Download gff for BS10480.3prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RK 3500..4408 14..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:11 Download gff for BS10480.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7098308..7098483 14..189 99 <- Plus
3R 7098555..7098732 190..367 100 <- Plus
3R 7098826..7099380 368..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:27 Download gff for BS10480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2924030..2924205 14..189 99 <- Plus
arm_3R 2924277..2924454 190..367 100 <- Plus
arm_3R 2924548..2925102 368..922 99   Plus

BS10480.5prime Sequence

877 bp (816 high quality bases) assembled on 2006-04-19

> BS10480.5prime
GAAGTTATCAGTCGACATGATGATGATGGACACCATGGACACCTCGCAAT
CGCAGCCGATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGC
GCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGC
CGAGGCTGAGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGT
ACAAGGAGCACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGC
GAGGGCAAGGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGA
GCATCGACGACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGG
GACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCG
ACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGAC
CATCGAATACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTG
GTGGAGCGACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCG
CACAACTTAAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAG
CCCGCCGACCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGG
CCAGCTCGACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCA
TCAGCCCCTCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGG
CAATGCTGGCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTG
GAGGAGCACAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACAGAATCG
AGCAAGTCGAGTGGCACCGCAAGCGCA

BS10480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1070-PB 2475 Alh-RB 1..861 17..877 4305 100 Plus
CG1070-PC 2931 Alh-RC 1..861 17..877 4305 100 Plus
CG1070-PA 4131 Alh-RA 2222..2517 582..877 1480 100 Plus
CG1070-PD 3972 Alh-RD 2063..2358 582..877 1480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RO 5324 CG1070-RO 781..1641 17..877 4305 100 Plus
Alh-RN 5100 CG1070-RN 781..1641 17..877 4305 100 Plus
Alh-RM 5196 CG1070-RM 781..1641 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7107078..7107644 583..17 2835 100 Minus
3R 32079331 3R 7101804..7102098 877..583 1475 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:36:43 has no hits.

BS10480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:20 Download gff for BS10480.5prime
Subject Subject Range Query Range Percent Splice Strand
Alh-PB 1..860 17..876 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:37 Download gff for BS10480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1070-PC 1..860 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:32 Download gff for BS10480.5prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RM 781..1640 17..876 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:16 Download gff for BS10480.5prime
Subject Subject Range Query Range Percent Splice Strand
Alh-RM 781..1640 17..876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:16 Download gff for BS10480.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7101805..7102097 584..876 100 <- Minus
3R 7107078..7107644 17..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:32 Download gff for BS10480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2927527..2927819 584..876 100 <- Minus
arm_3R 2932800..2933366 17..583 100   Minus

BS10480.complete Sequence

2507 bp assembled on 2009-08-24

GenBank Submission: KX805191

> BS10480.complete
GAAGTTATCAGTCGACATGATGATGATGGACACCATGGACACCTCGCAAT
CGCAGCCGATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGC
GCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGC
CGAGGCTGAGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGT
ACAAGGAGCACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGC
GAGGGCAAGGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGA
GCATCGACGACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGG
GACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCG
ACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGAC
CATCGAATACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTG
GTGGAGCGACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCG
CACAACTTAAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAG
CCCGCCGACCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGG
CCAGCTCGACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCA
TCAGCCCCTCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGG
CAATGCTGGCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTG
GAGGAGCACAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACAGAATCG
AGCAAGTCGAGTGGCACCGCAAGCGCAGGCAGTGGCAGTGGCAGCAGCAG
CAATACAAGTAGCACCAAGCACGGCAGCAACATCAAGGATATTAGCAGCA
GTAGCAATCAGCAGGCATCGACTGCGAGCAGCAGTAGTGCACCCAGCCTT
TATGTCTCCGTGCCACTGTCCACGGCCAACGTACCTGGAATCAATCTGCC
CACCAGCAGCACTAGCAGTAGTACCACCAGCGAATCCCATTCGGCATCGT
CGCGCAGCAGTGGTGCACAATCTCAGCATCAGCAGCAGCTAAGCAATGCT
TTGGTTGGTCCGCCCATGGGAGGATCCGCTGGGGCTTTTCATGGCGGAAC
AACCAGCGCTGGGTCCTCGTCGGTCATCCAGCAGCAGAGCGGCAAGTCAT
CGCCGGCTCTGGGCACGCTAGTCAGTGGCAACAGTGGTGGTAGCATAATC
TCCGCCAGTGGCTTTCCACTACCGAGTGGTAATCTCACTGCCACGACCAC
TGAGAGCGGCAACTTGAAGATCAGCTATGAGAAACAGACGACACGAGTGC
AACAATTGCAGGAGCAGGAGGCGCCACCGGCCAGACGCAGCAGAACGCTT
GATCTGAGCACGGCAAGCGCTTCATCGTCATCGCCATCTGCAGTGCCCGC
GACAACATCTCCCTTGGTCGTACTGAGTAACCAATTGCCACTTAACTCGG
TGGCAGCAAGTAGTTCCACCGGTGGTCTGAAGTTTACCTACGAGAGTCAG
ACCCAGATGGACGTGCCCATGATGCCTGTGAGCGCCATAAAGGATTCCCC
GCCCAGTTCGCCCGGCTCAGAGATAGGATCGGCCATGCACTCCGCAACTA
CTGCACCCGGTTCCCTGACTGGAGCTTCGACAGCGGCGACTGCTCAACCT
GGAAATGTACGGAAGCGTGGACGCAAGGCCAAAGATGCGACGATAGCTGC
TGCAGCGGCGGCAGCGGCAGCAGCAGCTGCTCTCAGCAATTCTCAACAGG
ATCTCAAGGATGTGCGCATACTCCAGAATGGGGCGAGCAATACACCGGGC
AATCCAGCTGGCAGCACACCAACGCCTCCTGCTACTCCCGCTTCGTCTAA
TGCTGTCAGCTCAGCCAGTTCGATCATTACACACACGGCCGCGCATATGC
TGGGCAACCAGATCAACCCAAACAGCAGCGTGGCCCAGAAGCTGTCCGAG
CAGCTGCACATGGAGGTCCAGGATCACTCGATCTACACTCCCGATTCAAT
GAACTCGCAATACGCCGGAGTTCCGTTCCCCGGCAAGCAGCGTAACTCCA
CTGCCGTTCCTAGCAACGCCACGCCAGCTCAAAATCCGCTGCAATCGATG
TTCAGCGGTGGCGGCATGAACGGCAACATGCCCATTCCGCAAAGTCTGGA
GCAGCTGCTGGAGCGCCAGTGGGAGCAGGGCTCGCAGTTTCTCATGGAGC
AAGCGCAGCACTTTGACATTGCCTCGCTGCTTAATTGCTTGCACCAGCTG
CAGAGCGAAAACCTCCGGCTGGAGGAGCATGTGACCAGCCTGATAGCGCG
ACGTGATCACCTGCTGGCGGTCAATGCGCGCCTGCAGATCCCGCTGAGTA
CCATCGCAAGCAACACCAAGGCCGAGGCGCATGGTAAGTAAAAGCTTTCT
AGACCAT

BS10480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RB 2475 CG1070-PB 1..2475 17..2491 12375 100 Plus
Alh-RO 3402 CG1070-PO 1..2467 17..2483 12335 100 Plus
Alh-RN 3159 CG1070-PN 1..2467 17..2483 12335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-RB 3883 CG1070-RB 781..3255 17..2491 12375 100 Plus
Alh-RO 5324 CG1070-RO 781..3247 17..2483 12335 100 Plus
Alh-RN 5100 CG1070-RN 781..3247 17..2483 12335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7098826..7099525 2140..1441 3500 100 Minus
3R 32079331 3R 7107078..7107644 583..17 2835 100 Minus
3R 32079331 3R 7101599..7102098 1082..583 2500 100 Minus
3R 32079331 3R 7101137..7101498 1443..1082 1810 100 Minus
3R 32079331 3R 7098555..7098735 2318..2138 905 100 Minus
3R 32079331 3R 7098311..7098483 2491..2319 865 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:30:00 has no hits.

BS10480.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:10 Download gff for BS10480.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 774..3246 17..2489 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:23 Download gff for BS10480.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 781..3253 17..2489 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:02 Download gff for BS10480.complete
Subject Subject Range Query Range Percent Splice Strand
Alh-RB 781..3253 17..2489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:02 Download gff for BS10480.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7098313..7098483 2319..2489 100 <- Minus
3R 7098555..7098732 2141..2318 100 <- Minus
3R 7098826..7099522 1444..2140 100 <- Minus
3R 7101137..7101497 1083..1443 100 <- Minus
3R 7101599..7102097 584..1082 100 <- Minus
3R 7107078..7107644 17..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:23 Download gff for BS10480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2924035..2924205 2319..2489 100 <- Minus
arm_3R 2924277..2924454 2141..2318 100 <- Minus
arm_3R 2924548..2925244 1444..2140 100 <- Minus
arm_3R 2926859..2927219 1083..1443 100 <- Minus
arm_3R 2927321..2927819 584..1082 100 <- Minus
arm_3R 2932800..2933366 17..583 100   Minus

BS10480.pep Sequence

Translation from 16 to 2490

> BS10480.pep
MMMMDTMDTSQSQPMDVAPAVAVAATSGAALVDFTAAMVSMAATAEAESA
ESNNNHIDMAEYKEHRKNKKKKREKREREGKEHRHHKHRDREHREHRRHR
DRDRDKERDREGHHHHPTHHHPNNSQHSTSASSSPSSASTTPSATIEYVG
GSASASPSYLGGGATGTGAAVGATTTYPHNLKIRFLLSGQRTELSPPTHQ
TSATAEVNAPLASSTSASIAVTASATAASAPPATGTTTLGSSISGNAGST
SSGNSSGVSATGGAQSAVGSGGYPKTESSKSSGTASAGSGSGSSSNTSST
KHGSNIKDISSSSNQQASTASSSSAPSLYVSVPLSTANVPGINLPTSSTS
SSTTSESHSASSRSSGAQSQHQQQLSNALVGPPMGGSAGAFHGGTTSAGS
SSVIQQQSGKSSPALGTLVSGNSGGSIISASGFPLPSGNLTATTTESGNL
KISYEKQTTRVQQLQEQEAPPARRSRTLDLSTASASSSSPSAVPATTSPL
VVLSNQLPLNSVAASSSTGGLKFTYESQTQMDVPMMPVSAIKDSPPSSPG
SEIGSAMHSATTAPGSLTGASTAATAQPGNVRKRGRKAKDATIAAAAAAA
AAAAALSNSQQDLKDVRILQNGASNTPGNPAGSTPTPPATPASSNAVSSA
SSIITHTAAHMLGNQINPNSSVAQKLSEQLHMEVQDHSIYTPDSMNSQYA
GVPFPGKQRNSTAVPSNATPAQNPLQSMFSGGGMNGNMPIPQSLEQLLER
QWEQGSQFLMEQAQHFDIASLLNCLHQLQSENLRLEEHVTSLIARRDHLL
AVNARLQIPLSTIASNTKAEAHGK*

BS10480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Alh-PB 824 CG1070-PB 1..824 1..824 4129 100 Plus
Alh-PO 1133 CG1070-PO 1..822 1..822 4118 100 Plus
Alh-PN 1052 CG1070-PN 1..822 1..822 4118 100 Plus
Alh-PM 1084 CG1070-PM 1..822 1..822 4118 100 Plus
Alh-PI 1134 CG1070-PI 1..822 1..822 4118 100 Plus
Alh-PM 1084 CG1070-PM 392..1075 120..738 180 23.7 Plus