Clone Sequence Records
BS10480.3prime Sequence
925 bp (847 high quality bases) assembled on 2006-04-19
> BS10480.3prime
ATGGTCTAGAAAGCTTTTACTTACCATGCGCCTCGGCCTTGGTGTTGCTT
GCGATGGTACTCAGCGGGATCTGCAGGCGCGCATTGACCGCCAGCAGGTG
ATCACGTCGCGCTATCAGGCTGGTCACATGCTCCTCCAGCCGGAGGTTTT
CGCTCTGCAGCTGGTGCAAGCAATTAAGCAGCGAGGCAATGTCAAAGTGC
TGCGCTTGCTCCATGAGAAACTGCGAGCCCTGCTCCCACTGGCGCTCCAG
CAGCTGCTCCAGACTTTGCGGAATGGGCATGTTGCCGTTCATGCCGCCAC
CGCTGAACATCGATTGCAGCGGATTTTGAGCTGGCGTGGCGTTGCTAGGA
ACGGCAGTGGAGTTACGCTGCTTGCCGGGGAACGGAACTCCGGCGTATTG
CGAGTTCATTGAATCGGGAGTGTAGATCGAGTGATCCTGGACCTCCATGT
GCAGCTGCTCGGACAGCTTCTGGGCCACGCTGCTGTTTGGGTTGATCTGG
TTGCCCAGCATATGCGCGGCCGTGTGTGTAATGATCGAACTGGCTGAGCT
GACAGCATTAGACGAAGCGGGAGTAGCAGGAGGCGTTGGTGTGCTGCCAG
CTGGATTGCCCGGTGTATTGCTCGCCCCATTCTGGAGTATGCGCACATCC
TTGAGATCCTGTTGAGAATTGCTGAGAGCAGCTGCTGCTGCCGCTGCCGC
CGCTGCAGCAGCTATCGTCGCATCTTTGGCCTTGCGTCCACGCTTCCGTA
CATTTCCAGGTTGAGCAGTCGCCGCTGTCGAAGCTCCAGTCAGGGAACCG
GGTGCAGTAGTTGCGGAGTGCATGGCCGATCCTATCTCTGAGCCGGGCGA
ACTGGGCGGGGAATCCTTTATGGCGCTCACAGGCATCATGGGCACGTCCA
TCTGGGTCTGACTCTCGTANGTAAA
BS10480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1070-PA | 4131 | Alh-RA | 3223..4131 | 925..17 | 4526 | 99.8 | Minus |
CG1070-PD | 3972 | Alh-RD | 3064..3972 | 925..17 | 4526 | 99.8 | Minus |
CG1070-PB | 2475 | Alh-RB | 1567..2475 | 925..17 | 4526 | 99.8 | Minus |
CG1070-PC | 2931 | Alh-RC | 1567..2467 | 925..25 | 4486 | 99.8 | Minus |
CG8246-PA | 1278 | Poxn-RA | 441..467 | 713..687 | 135 | 100 | Minus |
CG32180-PA | 2490 | Eip74EF-RA | 1921..1947 | 709..683 | 135 | 100 | Minus |
CG32180-PC | 2607 | Eip74EF-RC | 2038..2064 | 709..683 | 135 | 100 | Minus |
CG32180-PB | 2652 | Eip74EF-RB | 2083..2109 | 709..683 | 135 | 100 | Minus |
CG32180-PD | 2652 | Eip74EF-RD | 2083..2109 | 709..683 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alh-RP | 6029 | CG1070-RP | 4493..5401 | 925..17 | 4534 | 99.9 | Minus |
Alh-RL | 4850 | CG1070-RL | 3314..4222 | 925..17 | 4534 | 99.9 | Minus |
Alh-RK | 5033 | CG1070-RK | 3497..4405 | 925..17 | 4534 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7098826..7099383 | 368..925 | 2779 | 99.8 | Plus |
3R | 32079331 | 3R | 7098555..7098735 | 190..370 | 905 | 100 | Plus |
3R | 32079331 | 3R | 7098311..7098483 | 17..189 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:44:52 has no hits.
BS10480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:19 Download gff for
BS10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1070-PA | 3226..4131 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:36 Download gff for
BS10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1070-PB | 1570..2475 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:27 Download gff for
BS10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-RK | 3500..4408 | 14..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:11 Download gff for
BS10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-RK | 3500..4408 | 14..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:11 Download gff for
BS10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7098308..7098483 | 14..189 | 99 | <- | Plus |
3R | 7098555..7098732 | 190..367 | 100 | <- | Plus |
3R | 7098826..7099380 | 368..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:27 Download gff for
BS10480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2924030..2924205 | 14..189 | 99 | <- | Plus |
arm_3R | 2924277..2924454 | 190..367 | 100 | <- | Plus |
arm_3R | 2924548..2925102 | 368..922 | 99 | | Plus |
BS10480.5prime Sequence
877 bp (816 high quality bases) assembled on 2006-04-19
> BS10480.5prime
GAAGTTATCAGTCGACATGATGATGATGGACACCATGGACACCTCGCAAT
CGCAGCCGATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGC
GCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGC
CGAGGCTGAGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGT
ACAAGGAGCACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGC
GAGGGCAAGGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGA
GCATCGACGACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGG
GACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCG
ACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGAC
CATCGAATACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTG
GTGGAGCGACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCG
CACAACTTAAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAG
CCCGCCGACCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGG
CCAGCTCGACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCA
TCAGCCCCTCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGG
CAATGCTGGCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTG
GAGGAGCACAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACAGAATCG
AGCAAGTCGAGTGGCACCGCAAGCGCA
BS10480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1070-PB | 2475 | Alh-RB | 1..861 | 17..877 | 4305 | 100 | Plus |
CG1070-PC | 2931 | Alh-RC | 1..861 | 17..877 | 4305 | 100 | Plus |
CG1070-PA | 4131 | Alh-RA | 2222..2517 | 582..877 | 1480 | 100 | Plus |
CG1070-PD | 3972 | Alh-RD | 2063..2358 | 582..877 | 1480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alh-RO | 5324 | CG1070-RO | 781..1641 | 17..877 | 4305 | 100 | Plus |
Alh-RN | 5100 | CG1070-RN | 781..1641 | 17..877 | 4305 | 100 | Plus |
Alh-RM | 5196 | CG1070-RM | 781..1641 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7107078..7107644 | 583..17 | 2835 | 100 | Minus |
3R | 32079331 | 3R | 7101804..7102098 | 877..583 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:36:43 has no hits.
BS10480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:20 Download gff for
BS10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-PB | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:37 Download gff for
BS10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1070-PC | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:51:32 Download gff for
BS10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-RM | 781..1640 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:16 Download gff for
BS10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-RM | 781..1640 | 17..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:16 Download gff for
BS10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7101805..7102097 | 584..876 | 100 | <- | Minus |
3R | 7107078..7107644 | 17..583 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:51:32 Download gff for
BS10480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2927527..2927819 | 584..876 | 100 | <- | Minus |
arm_3R | 2932800..2933366 | 17..583 | 100 | | Minus |
BS10480.complete Sequence
2507 bp assembled on 2009-08-24
GenBank Submission: KX805191
> BS10480.complete
GAAGTTATCAGTCGACATGATGATGATGGACACCATGGACACCTCGCAAT
CGCAGCCGATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGC
GCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGC
CGAGGCTGAGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGT
ACAAGGAGCACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGC
GAGGGCAAGGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGA
GCATCGACGACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGG
GACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCG
ACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGAC
CATCGAATACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTG
GTGGAGCGACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCG
CACAACTTAAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAG
CCCGCCGACCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGG
CCAGCTCGACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCA
TCAGCCCCTCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGG
CAATGCTGGCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTG
GAGGAGCACAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACAGAATCG
AGCAAGTCGAGTGGCACCGCAAGCGCAGGCAGTGGCAGTGGCAGCAGCAG
CAATACAAGTAGCACCAAGCACGGCAGCAACATCAAGGATATTAGCAGCA
GTAGCAATCAGCAGGCATCGACTGCGAGCAGCAGTAGTGCACCCAGCCTT
TATGTCTCCGTGCCACTGTCCACGGCCAACGTACCTGGAATCAATCTGCC
CACCAGCAGCACTAGCAGTAGTACCACCAGCGAATCCCATTCGGCATCGT
CGCGCAGCAGTGGTGCACAATCTCAGCATCAGCAGCAGCTAAGCAATGCT
TTGGTTGGTCCGCCCATGGGAGGATCCGCTGGGGCTTTTCATGGCGGAAC
AACCAGCGCTGGGTCCTCGTCGGTCATCCAGCAGCAGAGCGGCAAGTCAT
CGCCGGCTCTGGGCACGCTAGTCAGTGGCAACAGTGGTGGTAGCATAATC
TCCGCCAGTGGCTTTCCACTACCGAGTGGTAATCTCACTGCCACGACCAC
TGAGAGCGGCAACTTGAAGATCAGCTATGAGAAACAGACGACACGAGTGC
AACAATTGCAGGAGCAGGAGGCGCCACCGGCCAGACGCAGCAGAACGCTT
GATCTGAGCACGGCAAGCGCTTCATCGTCATCGCCATCTGCAGTGCCCGC
GACAACATCTCCCTTGGTCGTACTGAGTAACCAATTGCCACTTAACTCGG
TGGCAGCAAGTAGTTCCACCGGTGGTCTGAAGTTTACCTACGAGAGTCAG
ACCCAGATGGACGTGCCCATGATGCCTGTGAGCGCCATAAAGGATTCCCC
GCCCAGTTCGCCCGGCTCAGAGATAGGATCGGCCATGCACTCCGCAACTA
CTGCACCCGGTTCCCTGACTGGAGCTTCGACAGCGGCGACTGCTCAACCT
GGAAATGTACGGAAGCGTGGACGCAAGGCCAAAGATGCGACGATAGCTGC
TGCAGCGGCGGCAGCGGCAGCAGCAGCTGCTCTCAGCAATTCTCAACAGG
ATCTCAAGGATGTGCGCATACTCCAGAATGGGGCGAGCAATACACCGGGC
AATCCAGCTGGCAGCACACCAACGCCTCCTGCTACTCCCGCTTCGTCTAA
TGCTGTCAGCTCAGCCAGTTCGATCATTACACACACGGCCGCGCATATGC
TGGGCAACCAGATCAACCCAAACAGCAGCGTGGCCCAGAAGCTGTCCGAG
CAGCTGCACATGGAGGTCCAGGATCACTCGATCTACACTCCCGATTCAAT
GAACTCGCAATACGCCGGAGTTCCGTTCCCCGGCAAGCAGCGTAACTCCA
CTGCCGTTCCTAGCAACGCCACGCCAGCTCAAAATCCGCTGCAATCGATG
TTCAGCGGTGGCGGCATGAACGGCAACATGCCCATTCCGCAAAGTCTGGA
GCAGCTGCTGGAGCGCCAGTGGGAGCAGGGCTCGCAGTTTCTCATGGAGC
AAGCGCAGCACTTTGACATTGCCTCGCTGCTTAATTGCTTGCACCAGCTG
CAGAGCGAAAACCTCCGGCTGGAGGAGCATGTGACCAGCCTGATAGCGCG
ACGTGATCACCTGCTGGCGGTCAATGCGCGCCTGCAGATCCCGCTGAGTA
CCATCGCAAGCAACACCAAGGCCGAGGCGCATGGTAAGTAAAAGCTTTCT
AGACCAT
BS10480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alh-RB | 2475 | CG1070-PB | 1..2475 | 17..2491 | 12375 | 100 | Plus |
Alh-RO | 3402 | CG1070-PO | 1..2467 | 17..2483 | 12335 | 100 | Plus |
Alh-RN | 3159 | CG1070-PN | 1..2467 | 17..2483 | 12335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alh-RB | 3883 | CG1070-RB | 781..3255 | 17..2491 | 12375 | 100 | Plus |
Alh-RO | 5324 | CG1070-RO | 781..3247 | 17..2483 | 12335 | 100 | Plus |
Alh-RN | 5100 | CG1070-RN | 781..3247 | 17..2483 | 12335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7098826..7099525 | 2140..1441 | 3500 | 100 | Minus |
3R | 32079331 | 3R | 7107078..7107644 | 583..17 | 2835 | 100 | Minus |
3R | 32079331 | 3R | 7101599..7102098 | 1082..583 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 7101137..7101498 | 1443..1082 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 7098555..7098735 | 2318..2138 | 905 | 100 | Minus |
3R | 32079331 | 3R | 7098311..7098483 | 2491..2319 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:30:00 has no hits.
BS10480.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:10 Download gff for
BS10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-RB | 774..3246 | 17..2489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:23 Download gff for
BS10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-RB | 781..3253 | 17..2489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:02 Download gff for
BS10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Alh-RB | 781..3253 | 17..2489 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:02 Download gff for
BS10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7098313..7098483 | 2319..2489 | 100 | <- | Minus |
3R | 7098555..7098732 | 2141..2318 | 100 | <- | Minus |
3R | 7098826..7099522 | 1444..2140 | 100 | <- | Minus |
3R | 7101137..7101497 | 1083..1443 | 100 | <- | Minus |
3R | 7101599..7102097 | 584..1082 | 100 | <- | Minus |
3R | 7107078..7107644 | 17..583 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:23 Download gff for
BS10480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2924035..2924205 | 2319..2489 | 100 | <- | Minus |
arm_3R | 2924277..2924454 | 2141..2318 | 100 | <- | Minus |
arm_3R | 2924548..2925244 | 1444..2140 | 100 | <- | Minus |
arm_3R | 2926859..2927219 | 1083..1443 | 100 | <- | Minus |
arm_3R | 2927321..2927819 | 584..1082 | 100 | <- | Minus |
arm_3R | 2932800..2933366 | 17..583 | 100 | | Minus |
BS10480.pep Sequence
Translation from 16 to 2490
> BS10480.pep
MMMMDTMDTSQSQPMDVAPAVAVAATSGAALVDFTAAMVSMAATAEAESA
ESNNNHIDMAEYKEHRKNKKKKREKREREGKEHRHHKHRDREHREHRRHR
DRDRDKERDREGHHHHPTHHHPNNSQHSTSASSSPSSASTTPSATIEYVG
GSASASPSYLGGGATGTGAAVGATTTYPHNLKIRFLLSGQRTELSPPTHQ
TSATAEVNAPLASSTSASIAVTASATAASAPPATGTTTLGSSISGNAGST
SSGNSSGVSATGGAQSAVGSGGYPKTESSKSSGTASAGSGSGSSSNTSST
KHGSNIKDISSSSNQQASTASSSSAPSLYVSVPLSTANVPGINLPTSSTS
SSTTSESHSASSRSSGAQSQHQQQLSNALVGPPMGGSAGAFHGGTTSAGS
SSVIQQQSGKSSPALGTLVSGNSGGSIISASGFPLPSGNLTATTTESGNL
KISYEKQTTRVQQLQEQEAPPARRSRTLDLSTASASSSSPSAVPATTSPL
VVLSNQLPLNSVAASSSTGGLKFTYESQTQMDVPMMPVSAIKDSPPSSPG
SEIGSAMHSATTAPGSLTGASTAATAQPGNVRKRGRKAKDATIAAAAAAA
AAAAALSNSQQDLKDVRILQNGASNTPGNPAGSTPTPPATPASSNAVSSA
SSIITHTAAHMLGNQINPNSSVAQKLSEQLHMEVQDHSIYTPDSMNSQYA
GVPFPGKQRNSTAVPSNATPAQNPLQSMFSGGGMNGNMPIPQSLEQLLER
QWEQGSQFLMEQAQHFDIASLLNCLHQLQSENLRLEEHVTSLIARRDHLL
AVNARLQIPLSTIASNTKAEAHGK*
BS10480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Alh-PB | 824 | CG1070-PB | 1..824 | 1..824 | 4129 | 100 | Plus |
Alh-PO | 1133 | CG1070-PO | 1..822 | 1..822 | 4118 | 100 | Plus |
Alh-PN | 1052 | CG1070-PN | 1..822 | 1..822 | 4118 | 100 | Plus |
Alh-PM | 1084 | CG1070-PM | 1..822 | 1..822 | 4118 | 100 | Plus |
Alh-PI | 1134 | CG1070-PI | 1..822 | 1..822 | 4118 | 100 | Plus |
Alh-PM | 1084 | CG1070-PM | 392..1075 | 120..738 | 180 | 23.7 | Plus |