Clone Sequence Records
BS10488.3prime Sequence
885 bp (784 high quality bases) assembled on 2006-04-19
> BS10488.3prime
ATGGTCTAGAAAGCTTTCATGTCAGATGCGGCGTGGCCGCAGTCGCCGAT
TTCCCCGCAAAGAATCGACTTCCGCCTGTCTGGTTGGTGAAGAGTAGCGT
GTCAACTGAGGGCAGCATCTGATTGGATCTCACCAGAAGAGGCACATTCA
CCATGGACACAGAGGGTGTCTGGGCCAAGCTCGTGGTCACAGACTGAACA
CCATTGCCCGTACTACTAAGCTTTCCGTGTGCATTCAGCGTAAAGGCGGG
TAGATAGTAGTTCCCAGATCGCACTGGTAGAGCATTCGTCGATATGGCGA
CACTGGAGGCGCATGAGACAGCGGTCAGCTCCATGGAGGCGGGTGACGAA
AACGGCGAGGACTCCAGTGAGGGGCAAGGTAGTCGGTCGCTGGGCTTACA
AGGCAAGAAGTCATCGTCTGGCAACAGCTCGTCCGGTAATTCATTCTTTA
TCTGGAAGTGCAGGGCAGCGGCCGAATCGGAAATGGCGTTGTCCGACGTC
CCCATTTCAGTGTTTGCATTAGGAGCATCGTACAGACCGCACTCCTCCAT
CTCCAGGGCCTGCTCCATGATCAGCTCTTCGGCTGAAGTCAGACTAAGAC
CGTGTAAGTCAAGGAACGGACCCTGAGTCTGCACTGGCTCCTTCTTGATT
TGCGGCACAGCAGGAATGGGCTCTAAGCTGGACTGCTGGGGTTGGCCCTG
TTGCAGCAGCTGCGGTTTTTGCTGCAGTTGCTTCGGTGCTAGCTGCTTTC
GTTCTCGCTTGGCTTTGGTCTGCTTAGGAGCCGGCGGGGCCAGCGGCACC
AGCACAGTGGTAAGTTCCTGCTGATGCTGTTGCGCCAGCGGCACAGGATG
CACTTGCTGCAGAGCAGTACCGGCAGGTAGAGTTA
BS10488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1454-PA | 2610 | wdn-RA | 1742..2610 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 3184 | CG1454-RA | 1994..2862 | 885..17 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28808805..28809284 | 406..885 | 2400 | 100 | Plus |
| 3R | 32079331 | 3R | 28808305..28808693 | 17..405 | 1945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:21:10 has no hits.
BS10488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:30 Download gff for
BS10488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-PA | 1743..2610 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:51 Download gff for
BS10488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1454-PA | 1743..2610 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:51:41 Download gff for
BS10488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 1995..2862 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:26 Download gff for
BS10488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 1995..2862 | 17..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:26 Download gff for
BS10488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28808305..28808693 | 17..405 | 100 | <- | Plus |
| 3R | 28808805..28809283 | 406..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:51:41 Download gff for
BS10488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24634027..24634415 | 17..405 | 100 | <- | Plus |
| arm_3R | 24634527..24635005 | 406..884 | 100 | | Plus |
BS10488.5prime Sequence
955 bp (782 high quality bases) assembled on 2006-04-19
> BS10488.5prime
GAAGTTATCAGTCGACATGGAAGGCGGCAAGGGCGAGGGCAAGAGAATGA
AAGAGGAGGCGCCAAGCAAGAAGTTGCCGCCTAAAATCTACGGCGGCGAT
GCGGGCACCCCCACGAAGGCGGCCCACGACGAGATACTCAGCTCTCTGCT
GCGGATCAACAACTTCGACTCGATATCGAGCATCAAGGACGAGTCGCTGG
ACATCGATCTGTCGGCGTGCGTGACCATCAGCTCCGCCAGCCTGGTCAAT
GGTAACAGTCTCTCCTCCACCGACTTTTGGCGCGTTTTGGACGAGAGTGC
CCAGAACAACACCGAGCTGAATCTATCCTCGGACGTCTGCCGCGATGACT
TGGCTGCCACCAGCTCGTCAACCGTGCCCAGCACTCTGACCAGTGATAAC
CACTCCAGCTCGGAGTTTAGTGTGACTTTCCTGCGGCCCGAGCCCCCGAA
TGCTTTCACTAATTCCCCGTTTAAGAAGACTTCGTCCAGCGGCACCTCCA
CACCCGTAAAGCTATCGCCCGAGCAGCTCCACCAGCAGCATCAGCTCCAA
ATGCCCCAGTCTCAGCTGCTGCAACGCAAGCCAAAGCTGCCGGCGGCGAC
GGCGGTGCGTCTGAAGGTCTTTAAGGAGGAGCCGCCCGAGGAGAAGCATC
CGCCGGAGCAAGTGGTCACCAAGGTAGAGGTGTGCGAGTCTGAGCTGCTG
CCGCCATCGTTTACCATATTCCAGCAGGCCAAATCGGCTGAATCGGTGGC
GGATGCGGCTAGCATGCCGCCTCCGGCTGCTTCGGAAACGAAGCCGTTGG
AGGTGGACCCGGCACCTCTACACAAGTGTCTCGACTGGCACGGACTGCTG
CTGGAGACGCCCGATGAGGTGGGCCAGCATGAGGCGGGCGCTCACAGGCT
GAGGCTCACCTATCGTTGCAGCGAGTGCCAGCGGGGATTCAAGTTGTTTG
CTGGG
BS10488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1454-PA | 2610 | wdn-RA | 1..938 | 17..954 | 4490 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 3184 | CG1454-RA | 253..1190 | 17..954 | 4570 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28810148..28811085 | 954..17 | 4570 | 99.1 | Minus |
Blast to na_te.dros performed 2015-02-12 04:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 122..242 | 501..622 | 121 | 57.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9152..9272 | 501..622 | 121 | 57.7 | Plus |
BS10488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:31 Download gff for
BS10488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-PA | 1..938 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:53 Download gff for
BS10488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1454-PA | 1..938 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:47:04 Download gff for
BS10488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 247..1190 | 10..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:13 Download gff for
BS10488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 247..1190 | 10..955 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:13 Download gff for
BS10488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28810147..28811091 | 10..955 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:47:04 Download gff for
BS10488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24635869..24636813 | 10..955 | 98 | | Minus |
BS10488.complete Sequence
2642 bp assembled on 2007-11-30
GenBank Submission: KX806160
> BS10488.complete
GAAGTTATCAGTCGACATGGAAGGCGGCAAGGGCGAGGGCAAGAGAATGA
AAGAGGAGGCGCCAAGCAAGAAGTTGCCGCCTAAAATCTACGGCGGCGAT
GCGGGCACCCCCACGAAGGCGGCCCACGACGAGATACTCAGCTCTCTGCT
GCGGATCAACAACTTCGACTCGATATCGAGCATCAAGGACGAGTCGCTGG
ACATCGATCTGTCGGCGTGCGTGACCATCAGCTCCGCCAGCCTGGTCAAT
GGTAACAGTCTCTCCTCCACCGACTTTTGGCGCGTTTTGGACGAGAGTGC
CCAGAACAACACCGAGCTGAATCTATCCTCGGACGTCTGCCGCGATGACT
TGGCTGCCACCAGCTCGTCAACCGTGCCCAGCACTCTGACCAGTGATAAC
CACTCCAGCTCGGAGTTTAGTGTGACTTTCCTGCGGCCCGAGCCCCCGAA
TGCTTTCACTAATTCCCCGTTTAAGAAGACTTCGTCCAGCGGCACCTCCA
CACCCGTAAAGCTATCGCCCGAGCAGCTCCACCAGCAGCATCAGCTCCAA
ATGCCCCAGTCTCAGCTGCTGCAACGCAAGCCAAAGCTGCCGGCGGCGAC
GGCGGTGCGTCTGAAGGTCTTTAAGGAGGAGCCGCCCGAGGAGAAGCATC
CGCCGGAGCAAGTGGTCACCAAGGTAGAGGTGTGCGAGTCTGAGCTGCTG
CCGCCATCGTTTACCATATTCCAGCAGGCCAAATCGGCTGAATCGGTGGC
GGATGCGGCTAGCATGCCGCCTCCGGCTGCTTCGGAAACGAAGCCGTTGG
AGGTGGACCCGGCACCTCTACACAAGTGTCTCGACTGCAACGGACTGCTG
CTGGAGACGCCCGATGAGGTGGCCAAGCATGAGGCGGCCGCTCACAGGCT
GAGGCTCACCTATCGTTGCAGCGAGTGCCAGCGGGAATTCGAGTTGTTGG
CTGGTTTGAAGAAGCACCTAAAGACGCACCGCACCGAGGGCCGCAAGGAC
ACCTGGAAGAAGTGTCCTGACTGCGGCAAGTGCCTCAAATTGGGAAGCAT
GTGGATGCATCGGAAGATTCACAGCGATAACAAGAAGTACCAGTGCGACA
TCTGCGGCCAAAAGTTTGTGCAAAAAATAAACCTCACGCACCACGCACGG
ATTCACTCATCGGAGAAGCCGTACGAGTGTCCCGAGTGTCAGAAGCGATT
CCAGGAGCGCTCACATCTGCAGCGCCACCAGAAGTACCATGCGCAAACGC
GTTCCTATCGTTGCGAAAAGTGCGGCAAGATGTACAAAACGGAGCGCTGT
CTCAAGGTCCACAACTTGGTGCATCTTGAGCAGCGACCATTCGCGTGCAC
AGTGTGCGACAAGAGCTTCATCAGCAATTCGAAGCTTAAGCAGCACTCCA
ACATACACACAGGAATGCGCCCGTTCAAATGCAATTATTGTCCGCGAGAC
TTCACCAACTTCCCCAATTGGTTGAAGCACACGAGACGCCGACACAAGGT
GGACCACAAAACGGGCGAACACCTCGAGAACATTCCCTCCTACTGCTCTA
AAAAGTCCACTACAAACAAGGCCCAAAAGGCAGCCGCGGCAGCAGCAGCA
GCGGCGGCAGCATCTTCAGCTGTGAATCCCAACGAACTCTCCGCTTCTAG
TGAACTTAAAGCCAAGGCTAATCTTACGTCTACTGCTGCACCGGCTCCTG
CAAAACAAGCGCGGAAAAAGAAGCAGCCGCAGCAGGCCACTCTTGCTGCA
TTGGGAATAACTCTACCTGCCGGTACTGCTCTGCAGCAAGTGCATCCTGT
GCCGCTGGCGCAACAGCATCAGCAGGAACTTACCACTGTGCTGGTGCCGC
TGGCCCCGCCGGCTCCTAAGCAGACCAAAGCCAAGCGAGAACGAAAGCAG
CTAGCACCGAAGCAACTGCAGCAAAAACCGCAGCTGCTGCAACAGGGCCA
ACCCCAGCAGTCCAGCTTAGAGCCCATTCCTGCTGTGCCGCAAATCAAGA
AGGAGCCAGTGCAGACTCAGGGTCCGTTCCTTGACTTACACGGTCTTAGT
CTGACTTCAGCCGAAGAGCTGATCATGGAGCAGGCCCTGGAGATGGAGGA
GTGCGGTCTGTACGATGCTCCTAATGCAAACACTGAAATGGGGACGTCGG
ACAACGCCATTTCCGATTCGGCCGCTGCCCTGCACTTCCAGATAAAGAAT
GAATTACCGGACGAGCTGTTGCCAGACGATGACTTCTTGCCTTGTAAGCC
CAGCGACCGACTACCTTGCCCCTCACTGGAGTCCTCGCCGTTTTCGTCAC
CCGCCTCCATGGAGCTGACCGCTGTCTCATGCGCCTCCAGTGTCGCCATA
TCGACGAATGCTCTACCAGTGCGATCTGGGAACTACTATCTACCCGCCTT
TACGCTGAATGCACACGGAAAGCTTAGTAGTACGGGCAATGGTGTTCAGT
CTGTGACCACGAGCTTGGCCCAGACACCCTCTGTGTCCATGGTGAATGTG
CCTCTTCTGGTGAGATCCAATCAGATGCTGCCCTCAGTTGACACGCTACT
CTTCACCAACCAGACAGGCGGAAGTCGATTCTTTGCGGGGAAATCGGCGA
CTGCGGCCACGCCGCATCTGACATGAAAGCTTTCTAGACCAT
BS10488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 2610 | CG1454-PA | 1..2610 | 17..2626 | 13050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-RA | 3184 | CG1454-RA | 253..2862 | 17..2626 | 13050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28808805..28810010 | 2237..1032 | 6030 | 100 | Minus |
| 3R | 32079331 | 3R | 28810070..28811085 | 1032..17 | 5080 | 100 | Minus |
| 3R | 32079331 | 3R | 28808305..28808693 | 2626..2238 | 1945 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 122..242 | 501..622 | 121 | 57.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9152..9272 | 501..622 | 121 | 57.7 | Plus |
BS10488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:51 Download gff for
BS10488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 1..2610 | 17..2626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:29 Download gff for
BS10488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 248..2863 | 10..2626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:21 Download gff for
BS10488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 253..2861 | 17..2625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:40 Download gff for
BS10488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 254..2862 | 17..2625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:18 Download gff for
BS10488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wdn-RA | 253..2861 | 17..2625 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:18 Download gff for
BS10488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28808306..28808693 | 2238..2625 | 100 | <- | Minus |
| 3R | 28808805..28810009 | 1033..2237 | 100 | <- | Minus |
| 3R | 28810070..28811085 | 17..1032 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:21 Download gff for
BS10488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24634028..24634415 | 2238..2625 | 100 | <- | Minus |
| arm_3R | 24634527..24635731 | 1033..2237 | 100 | <- | Minus |
| arm_3R | 24635792..24636807 | 17..1032 | 100 | | Minus |
BS10488.pep Sequence
Translation from 16 to 2625
> BS10488.pep
MEGGKGEGKRMKEEAPSKKLPPKIYGGDAGTPTKAAHDEILSSLLRINNF
DSISSIKDESLDIDLSACVTISSASLVNGNSLSSTDFWRVLDESAQNNTE
LNLSSDVCRDDLAATSSSTVPSTLTSDNHSSSEFSVTFLRPEPPNAFTNS
PFKKTSSSGTSTPVKLSPEQLHQQHQLQMPQSQLLQRKPKLPAATAVRLK
VFKEEPPEEKHPPEQVVTKVEVCESELLPPSFTIFQQAKSAESVADAASM
PPPAASETKPLEVDPAPLHKCLDCNGLLLETPDEVAKHEAAAHRLRLTYR
CSECQREFELLAGLKKHLKTHRTEGRKDTWKKCPDCGKCLKLGSMWMHRK
IHSDNKKYQCDICGQKFVQKINLTHHARIHSSEKPYECPECQKRFQERSH
LQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDKS
FISNSKLKQHSNIHTGMRPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTG
EHLENIPSYCSKKSTTNKAQKAAAAAAAAAAASSAVNPNELSASSELKAK
ANLTSTAAPAPAKQARKKKQPQQATLAALGITLPAGTALQQVHPVPLAQQ
HQQELTTVLVPLAPPAPKQTKAKRERKQLAPKQLQQKPQLLQQGQPQQSS
LEPIPAVPQIKKEPVQTQGPFLDLHGLSLTSAEELIMEQALEMEECGLYD
APNANTEMGTSDNAISDSAAALHFQIKNELPDELLPDDDFLPCKPSDRLP
CPSLESSPFSSPASMELTAVSCASSVAISTNALPVRSGNYYLPAFTLNAH
GKLSSTGNGVQSVTTSLAQTPSVSMVNVPLLVRSNQMLPSVDTLLFTNQT
GGSRFFAGKSATAATPHLT*
BS10488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wdn-PA | 869 | CG1454-PA | 1..869 | 1..869 | 4540 | 100 | Plus |
| Kr-h1-PA | 791 | CG45074-PA | 217..586 | 299..682 | 405 | 26.5 | Plus |
| Kr-h1-PB | 845 | CG45074-PB | 271..640 | 299..682 | 405 | 26.5 | Plus |
| CG15269-PA | 587 | CG15269-PA | 325..518 | 299..491 | 389 | 35.7 | Plus |
| CG12299-PA | 736 | CG12299-PA | 101..702 | 111..739 | 388 | 24.2 | Plus |
| CG15269-PA | 587 | CG15269-PA | 123..491 | 156..500 | 282 | 23.6 | Plus |
| Kr-h1-PA | 791 | CG45074-PA | 90..347 | 236..521 | 252 | 25.8 | Plus |
| Kr-h1-PB | 845 | CG45074-PB | 144..401 | 236..521 | 252 | 25.8 | Plus |
| CG15269-PA | 587 | CG15269-PA | 377..515 | 293..432 | 243 | 33.6 | Plus |
| CG15269-PA | 587 | CG15269-PA | 293..415 | 381..501 | 175 | 34.7 | Plus |
