Clone Sequence Records
BS10490.3prime Sequence
943 bp (906 high quality bases) assembled on 2006-04-19
> BS10490.3prime
ATGGTCTAGAAAGCTTTTAGACAAAGACCTTGGCGAGGCCATCGGCCCCG
GCACTAGCAATGTACGGCTTTGTGGCATGGAAGGCCACATCGAATATGCT
CTCGTCAAACTTCTTGCGATGCGCTGTGATCTCCTGCACGCACGTCTTAT
TGTCCAGGTTCCACAGCCGTATCGAGCAGTCGTGCGAGCCGGATAGCAAA
TACAGGCCATGAGCATCGACGGCCAGCGAGGTGACCGGCTCTAAATGCGC
CACCATGGAGTGTACCAGCGTGCCGGATGTGTTGTCCCAGAAGCGGATGT
GACGATCCTCGTGCGCGGTTATCGTAATGGGTAGCGTTGGGTGTGACACC
ACCTTGTTAATGAACTTCCCCGTGTTGCCAGACATCTCCTGCGCCGCCTC
CAGACGCACCACCTGCTTGCCCGTCTCCGTATCGTACACGATGCAGTGGG
CACTGTTGTAGGCCACCACGATATGGTCAACCTCATTGCGAACAAAGTCA
ACGGATGAGGGTACACCCTCTGCCTCGGAGGCTGTGTATGTGCGCAGCAG
CGGTTCCTTATTGTATGGCGACCACAGCTTAACCGTTCCATCCGCTGAGC
ATGACACAATGTTGCTTTGCATGGTGGTAAGGCCCCACACGGCATCCGTA
TGCCCCTCGAGCGTGCCGGAATGCACGTTCGGATCATAGCAATCGTACGG
ATCGATATTCGGCGACGGCAATTGCCAGCATTCAATGTTACCGTCCAGCC
CGCCCGAATAGCATGTCTCGCCGCTGGACGACATGCCCAGGCACAGAACT
GGACCCGTATGGGCCCTGAACGTATACAGCGGTTCCACATCCAAGCTGGC
CGACTTTTTGGCCTGCACCGTCTTCTGAAGGTTCCACAGCTTAAGCGTAT
GATCCTCGGAAGCCGTGATCAGCACCGGCTCCTCTGGGTGAAA
BS10490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7392-PA | 2193 | Cka-RA | 1267..2193 | 943..17 | 4635 | 100 | Minus |
| CG7392-PB | 2193 | Cka-RB | 1267..2193 | 943..17 | 4635 | 100 | Minus |
| CG7392-PD | 2193 | Cka-RD | 1267..2193 | 943..17 | 4635 | 100 | Minus |
| CG7392-PC | 2193 | Cka-RC | 1267..2193 | 943..17 | 4635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-RG | 2738 | CG7392-RG | 1560..2489 | 943..14 | 4650 | 100 | Minus |
| Cka-RF | 5366 | CG7392-RF | 1815..2744 | 943..14 | 4650 | 100 | Minus |
| Cka-RE | 2819 | CG7392-RE | 1641..2570 | 943..14 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8037275..8038204 | 943..14 | 4650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:23:44 has no hits.
BS10490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:32 Download gff for
BS10490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-PC | 1270..2193 | 17..940 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:55 Download gff for
BS10490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7392-PC | 1270..2193 | 17..940 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:00:18 Download gff for
BS10490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RE | 1644..2570 | 14..940 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:07 Download gff for
BS10490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RE | 1644..2570 | 14..940 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:07 Download gff for
BS10490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8037278..8038204 | 14..940 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:00:18 Download gff for
BS10490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8037278..8038204 | 14..940 | 100 | | Minus |
BS10490.5prime Sequence
827 bp (777 high quality bases) assembled on 2006-04-19
> BS10490.5prime
GAAGTTATCAGTCGACATGGGCACCAATTCGGGAGCCACCGCTGGCATAA
ACAACAAGCCGGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGC
GGTGTGGGCGGTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCT
GGGCGGTGGCGGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTG
GACAGAACGCCAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGC
GGAAACGGGATGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCC
CCAATACACAATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGC
GCTTCGAGCTGGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAG
GCTCGCATTGCTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAA
ATCGGATTTGACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGG
AGCGTGCGAAATTCTATCGTTTAAAATACGGCACCGATCCGCCGCAGCTC
AATGAGTTCAAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGC
CACTGACTCGGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGC
AGGGGCGTCAGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGAC
AACATCATCGATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAA
CAATAATGCCGAGCACGACGGCAGCGGCGGAGGACTGGGTGGTGGACTTG
GCGGCGGCACCGGCGGCGAGAACCTTA
BS10490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7392-PA | 2193 | Cka-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
| CG7392-PB | 2193 | Cka-RB | 1..811 | 17..827 | 4055 | 100 | Plus |
| CG7392-PD | 2193 | Cka-RD | 1..811 | 17..827 | 4055 | 100 | Plus |
| CG7392-PC | 2193 | Cka-RC | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-RG | 2738 | CG7392-RG | 318..1128 | 17..827 | 4055 | 100 | Plus |
| Cka-RF | 5366 | CG7392-RF | 498..1308 | 17..827 | 4055 | 100 | Plus |
| Cka-RE | 2819 | CG7392-RE | 318..1128 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8035817..8036247 | 397..827 | 2155 | 100 | Plus |
| 2L | 23513712 | 2L | 8032258..8032642 | 17..401 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:25:00 has no hits.
BS10490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:33 Download gff for
BS10490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-PC | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:56 Download gff for
BS10490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7392-PC | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:44:11 Download gff for
BS10490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RE | 318..1127 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:11:41 Download gff for
BS10490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RE | 318..1127 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:11:41 Download gff for
BS10490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
| 2L | 8035821..8036246 | 401..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:44:11 Download gff for
BS10490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
| arm_2L | 8035821..8036246 | 401..826 | 100 | | Plus |
BS10490.complete Sequence
2225 bp assembled on 2007-11-30
GenBank Submission: FJ636684
> BS10490.complete
GAAGTTATCAGTCGACATGGGCACCAATTCGGGAGCCACCGCTGGCATAA
ACAACAAGCCGGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGC
GGTGTGGGCGGTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCT
GGGCGGTGGCGGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTG
GACAGAACGCCAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGC
GGAAACGGGATGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCC
CCAATACACAATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGC
GCTTCGAGCTGGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAG
GCTCGCATTGCTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAA
ATCGGATTTGACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGG
AGCGTGCGAAATTCTATCGTTTAAAATACGGCACCGATCCGCCGCAGCTC
AATGAGTTCAAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGC
CACTGACTCGGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGC
AGGGGCGTCAGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGAC
AACATCATCGATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAA
CAATAATGCCGAGCACGACGGCAGCGGCGGAGGACTGGGTGGTGGACTTG
GCGGCGGCACCGGCGGCGAGAACCTTAGCCCAAACATCAATGGAAACGAG
AGCAACAAACGCGCATCGGAGACGGAAGGCCGTCATACTCCCGCTAAAAA
AGTGCAACAATCGATCGATGAAATAATCGTGGACACCGAGGCAGCTGTGA
TGGCGAACTTTGAGTTCCTGGGCGCCACCGAGATGTCCGACGACGACGAG
ATATCTGACGATCTGGAAATGGTGGCCACCGACAATGACGACACAGACGT
AAAGCTGGCCAAGCGCGCCAAGTCTGGCAAGGATATGCTCACCGAGGAGG
TGGACGGCTCGTTGGGACTGGGTGAGCTTGCCCAGCTGACGGTGAATAAC
GAATCTGATGGCGCCTACGATGCGAACTCCAAGGATGGAACTGGCGGCAG
TGCCGGCGGTGCTGGTTACCGCAAAACCTGGAACGCCAAGTACACGCTTC
GCTCGCACTTTGACGGAGTACGATCACTTATCTTTCACCCAGAGGAGCCG
GTGCTGATCACGGCTTCCGAGGATCATACGCTTAAGCTGTGGAACCTTCA
GAAGACGGTGCAGGCCAAAAAGTCGGCCAGCTTGGATGTGGAACCGCTGT
ATACGTTCAGGGCCCATACGGGTCCAGTTCTGTGCCTGGGCATGTCGTCC
AGCGGCGAGACATGCTATTCGGGCGGGCTGGACGGTAACATTGAATGCTG
GCAATTGCCGTCGCCGAATATCGATCCGTACGATTGCTATGATCCGAACG
TGCATTCCGGCACGCTCGAGGGGCATACGGATGCCGTGTGGGGCCTTACC
ACCATGCAAAGCAACATTGTGTCATGCTCAGCGGATGGAACGGTTAAGCT
GTGGTCGCCATACAATAAGGAACCGCTGCTGCGCACATACACAGCCTCCG
AGGCAGAGGGTGTACCCTCATCCGTTGACTTTGTTCGCAATGAGGTTGAC
CATATCGTGGTGGCCTACAACAGTGCCCACTGCATCGTGTACGATACGGA
GACGGGCAAGCAGGTGGTGCGTCTGGAGGCGGCGCAGGAGATGTCTGGCA
ACACGGGGAAGTTCATTAACAAGGTGGTGTCACACCCAACGCTACCCATT
ACGATAACCGCGCACGAGGATCGTCACATCCGCTTCTGGGACAACACATC
CGGCACGCTGGTACACTCCATGGTGGCGCATTTAGAGCCGGTCACCTCGC
TGGCCGTCGATGCTCATGGCCTGTATTTGCTATCCGGCTCGCACGACTGC
TCGATACGGCTGTGGAACCTGGACAATAAGACGTGCGTGCAGGAGATCAC
AGCGCATCGCAAGAAGTTTGACGAGAGCATATTCGATGTGGCCTTCCATG
CCACAAAGCCGTACATTGCTAGTGCCGGGGCCGATGGCCTCGCCAAGGTC
TTTGTCTAAAAGCTTTCTAGACCAT
BS10490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-RC | 2193 | CG7392-PC | 1..2193 | 17..2209 | 10965 | 100 | Plus |
| Cka-RD | 2193 | CG7392-PD | 1..2193 | 17..2209 | 10965 | 100 | Plus |
| Cka-RB | 2193 | CG7392-PB | 1..2193 | 17..2209 | 10965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-RC | 3254 | CG7392-RC | 765..2960 | 17..2212 | 10980 | 100 | Plus |
| Cka-RD | 3003 | CG7392-RD | 514..2709 | 17..2212 | 10980 | 100 | Plus |
| Cka-RB | 5135 | CG7392-RB | 318..2513 | 17..2212 | 10980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8037089..8038204 | 1097..2212 | 5580 | 100 | Plus |
| 2L | 23513712 | 2L | 8035817..8036299 | 397..879 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 8032258..8032642 | 17..401 | 1925 | 100 | Plus |
| 2L | 23513712 | 2L | 8036356..8036576 | 877..1097 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:33:49 has no hits.
BS10490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:53 Download gff for
BS10490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RD | 1..2193 | 17..2209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:31 Download gff for
BS10490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RD | 355..2550 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:19 Download gff for
BS10490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RB | 318..2508 | 17..2207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:48 Download gff for
BS10490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RD | 355..2545 | 17..2207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:47 Download gff for
BS10490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RB | 318..2508 | 17..2207 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:47 Download gff for
BS10490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
| 2L | 8035821..8036298 | 401..878 | 100 | -> | Plus |
| 2L | 8036358..8036576 | 879..1097 | 100 | -> | Plus |
| 2L | 8037090..8038199 | 1098..2207 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:19 Download gff for
BS10490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8032258..8032641 | 17..400 | 100 | -> | Plus |
| arm_2L | 8035821..8036298 | 401..878 | 100 | -> | Plus |
| arm_2L | 8036358..8036576 | 879..1097 | 100 | -> | Plus |
| arm_2L | 8037090..8038199 | 1098..2207 | 100 | | Plus |
BS10490.pep Sequence
Translation from 16 to 2208
> BS10490.pep
MGTNSGATAGINNKPVGGATGAGVLVGGGVGGANSSIGGVLSNSLGGGGS
GGLSISGLNAGGQNANVGGMGNVGGDDGGNGMVGGGVNNQQATTPQYTIP
GILHFIQHEWSRFELERSQWDVDRAELQARIAMLLGERKCLESLKSDLTR
RIKMLEYALRQERAKFYRLKYGTDPPQLNEFKPSNEDAGLAGEVATDSEV
PYSSVSNTTWRQGRQMLRQYLAEIGYTDNIIDVRSNRVRSILGLNNNAEH
DGSGGGLGGGLGGGTGGENLSPNINGNESNKRASETEGRHTPAKKVQQSI
DEIIVDTEAAVMANFEFLGATEMSDDDEISDDLEMVATDNDDTDVKLAKR
AKSGKDMLTEEVDGSLGLGELAQLTVNNESDGAYDANSKDGTGGSAGGAG
YRKTWNAKYTLRSHFDGVRSLIFHPEEPVLITASEDHTLKLWNLQKTVQA
KKSASLDVEPLYTFRAHTGPVLCLGMSSSGETCYSGGLDGNIECWQLPSP
NIDPYDCYDPNVHSGTLEGHTDAVWGLTTMQSNIVSCSADGTVKLWSPYN
KEPLLRTYTASEAEGVPSSVDFVRNEVDHIVVAYNSAHCIVYDTETGKQV
VRLEAAQEMSGNTGKFINKVVSHPTLPITITAHEDRHIRFWDNTSGTLVH
SMVAHLEPVTSLAVDAHGLYLLSGSHDCSIRLWNLDNKTCVQEITAHRKK
FDESIFDVAFHATKPYIASAGADGLAKVFV*
BS10490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-PC | 730 | CG7392-PC | 1..730 | 1..730 | 3833 | 100 | Plus |
| Cka-PD | 730 | CG7392-PD | 1..730 | 1..730 | 3833 | 100 | Plus |
| Cka-PB | 730 | CG7392-PB | 1..730 | 1..730 | 3833 | 100 | Plus |
| Cka-PA | 730 | CG7392-PA | 1..730 | 1..730 | 3833 | 100 | Plus |
| Cka-PF | 747 | CG7392-PF | 1..747 | 1..730 | 3805 | 97.7 | Plus |
