Clone Sequence Records
BS10492.3prime Sequence
775 bp (772 high quality bases) assembled on 2006-04-19
> BS10492.3prime
ATGGTCTAGAAAGCTTTCAGCCGGACTCCACCTGTTCGGAGAGCGTCCTG
TCCGCAGGCGCTCCCGATCCGGAGCCGGAGCCCGCGCACACCACACAGGC
CTTGGGCACAGTCTGCTCTATGTACATGGTAATCCTTTCCCGTACCTCGG
GAACCACGGAGCACATTACCTGCTCATATCGCTGGGATCCCAGCTGTGCC
TGCAACGACTGCAGCTGCCACTTGAGATACTCGGTAAGGGGGATCTTGTA
AACGGGATCTTTGAGCACCAACTGCCTGTGGCGGTCGTCGTGATAGGTCT
TGGCCGGGTAGCCCTTGGTGTGAAATTCCTCGCTGACACCGCCGCCACTG
CCCAGCTGCTGCTGCAGATCGTCCAGCTCGTGTTCGTCATGAATGACCAA
TGAATCATAGAAGCGAGGCGTGGCCTGTGACGCACCCTCCTCGGTGGCGG
CGTACTGCTTGTCCATCACTTCGCCCAACGTTTCGTCCACCAGCTGCAGG
ATATGTGGCAGGCGAGCAAGCAGCAGCTCATTGCTTCCAAAGATCGAGGC
GAAGGCCAGGCAGAAGAGCTTTCTCTTCTCTGCGTGCGTGTCGGGAACCA
TTGGGAACATCTCGATCCAAACGTCCAGGATGCGGGCCAAAGCGTCCGCT
TGTGGCAATTGCTGTACCACCGACATGAAAACAGACTGGTCAATGAGCAG
GGTGCGGGCCACGATGGTCAGATACCATCCCATTGTCATGGGATACTCCT
GCTTAAGGCACACCTGCTGGAAGAC
BS10492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33139-PA | 3228 | Ranbp11-RA | 2470..3228 | 775..17 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp11-RA | 3395 | CG33139-RA | 2556..3314 | 775..17 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15686576..15687334 | 775..17 | 3795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:25:34 has no hits.
BS10492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:35 Download gff for
BS10492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33139-PA | 2470..3228 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:57 Download gff for
BS10492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33139-PA | 2470..3228 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:55:40 Download gff for
BS10492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 2556..3314 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:53 Download gff for
BS10492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 2556..3314 | 17..775 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:53 Download gff for
BS10492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15686576..15687334 | 17..775 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:55:40 Download gff for
BS10492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11574081..11574839 | 17..775 | 100 | | Minus |
BS10492.5prime Sequence
917 bp (775 high quality bases) assembled on 2006-04-19
> BS10492.5prime
GAAGTTATCAGTCGACATGGAAATGGCAACGGGAGCAGTATCTGGAGCAG
CCGCAGCGGGTGCTGGAGCGTCGGTGGAGCAGCTGGTAGCCCAGACACTG
CAGGCGGCCACAAATCCGAGCCATGAGATTGTCCAGAAGGCGGAGGCGCA
GCTGCGCGAGTGGGAGCAGCAGCCGGGCTTCTTTCCCACGATTGCCCGTC
TGAGCATGCGACGAGGTGGCGGCGGCGACGTGGTGTCCAGTACGGAGGAC
TCCGAGGTGAAGGTGCGCTGGATGGCGGCTGTCTACCTAAAGAATGGCGT
GGAGCGCTATTGGCGGCCCAATTCGCGGCAGGAACTGCCCGCGGAGCAAA
AGCAGCAGATCCGGGAAGTACTTCTGCGTCACTACGACGCAGAGGAAGTG
CCCCAGGTAGCCCTGCAGGTAGCCGTGCTCCTGGGTCGCCTGGCACGCAC
GGATTACCCGCGATTTTGGCCGGATCTGCTGCCGACACTCATGAAGCAGC
TGCAGTCCTGCGGTACGGATGGGGATTCGGCCCTGCAGCAGCGAATTCTT
ATTGTCCTACACTATGTCCTCAAGGCCCTGGCCTCACGGCGTCTGATGGC
CGAGCAGCGTGCCTTCCAGGAGCTGGGCTTACAGATATTTGGATATCTGG
CGTGGGACATTTGGGCACCACTTACGACGCGCTTTTTGCAGCTCGTGCGA
AAGGACGAGGCCATGGCCCTCAATGCCCTTCAACGGGCGTATGTGGTGAT
GAGAACCCTGCGCAAGCTGGTGGTCTACGGCTGTGCCAAGCCGTACAAGT
CCACGGATCACATGAACTTTGTGGAGCAGCTTTTTCAGCGGTTGCGACAG
TGCCTCGAACTGCGCTATGAACTGAAAGTGGGATCGGCCACACCAGGCAC
TGCCACGATACTCACCG
BS10492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33139-PA | 3228 | Ranbp11-RA | 1..901 | 17..917 | 4480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp11-RA | 3395 | CG33139-RA | 87..987 | 17..917 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15682805..15683705 | 17..917 | 4490 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:22:07 has no hits.
BS10492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:36 Download gff for
BS10492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33139-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:02:58 Download gff for
BS10492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33139-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:32 Download gff for
BS10492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 80..987 | 8..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:41 Download gff for
BS10492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 80..987 | 8..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:41 Download gff for
BS10492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15682798..15683705 | 8..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:32 Download gff for
BS10492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11570303..11571210 | 8..917 | 99 | | Plus |
BS10492.complete Sequence
3260 bp assembled on 2007-11-30
GenBank Submission: FJ636685
> BS10492.complete
GAAGTTATCAGTCGACATGGAAATGGCAACGGGAGCAGTATCTGGAGCAG
CCGCAGCGGGTGCTGGAGCGTCGGTGGAGCAGCTGGTAGCCCAGACACTG
CAGGCGGCCACAAATCCGAGCCATGAGATTGTCCAGAAGGCGGAGGCGCA
GCTGCGCGAGTGGGAGCAGCAGCCGGGCTTCTTTCCCACGATTGCCCGTC
TGAGCATGCGACGAGGTGGCGGCGGCGACGTGGTGTCCAGTACGGAGGAC
TCCGAGGTGAAGGTGCGCTGGATGGCGGCTGTCTACCTAAAGAATGGCGT
GGAGCGCTATTGGCGGCCCAATTCGCGGCAGGAACTGCCCGCGGAGCAAA
AGCAGCAGATCCGGGAAGTACTTCTGCGTCACTACGACGCAGAGGAAGTG
CCCCAGGTAGCCCTGCAGGTAGCCGTGCTCCTGGGTCGCCTGGCACGCAC
GGATTACCCGCGATTTTGGCCGGATCTGCTGCCGACACTCATGAAGCAGC
TGCAGTCCTGCGGTACGGATGGGGATTCGGCCCTGCAGCAGCGAATTCTT
ATTGTCCTACACTATGTCCTCAAGGCCCTGGCCTCACGGCGTCTGATGGC
CGAGCAGCGTGCCTTCCAGGAGCTGGGCTTACAGATATTTGGATATCTGG
CGTGGGACATTTGGGCACCACTTACGACGCGCTTTTTGCAGCTCGTGCGA
AAGGACGAGGCCATGGCCCTCAATGCCCTTCAACGGGCGTATGTGGTGAT
GAGAACCCTGCGCAAGCTGGTGGTCTACGGCTGTGCCAAGCCGTACAAGT
CCACGGATCACATGAACTTTGTGGAGCAGCTTTTCCAGCGGTTGCGACAG
TGCCTCGAACTGCGCTATGAACTGAAAGTGGGATCGGCCACACCAGGCAC
TGCCACGATACTCACCGAATTGGAGCGCTTTGTGATTAAGATGATGAAGA
CCCTCAATGAACTGATGGAGCGGCATTCTGTGTCCTTTGCGAGGTTCGTT
CCTGTGGCCCTGGAGTTCAGCTTCCACTATGTGTTCCACGAGGGCACCGC
CCTCATTTTCGACGCCGGCGATCGCATTAACTTTAAAAACTTTGCCATAC
AGGCGCTGAACATGCTGAAAGGTATCATGCTGAGCGGCAACGATAGCATC
AGTGCTCCGCCCGAAGGTGGTGCTCACATAGAGGATGAGCTGTTAGCCAG
CGCTGCTCAAAGCCAAGCCAAGTTCTTCACAGCGGAGCGAGTGACCTACA
TCTGTGAGAAGATCGTGACGCACTATTTTCTGCTCACTCAACAGGAGCTG
GAGGAGTGGCAGCAGGATCCAGAGGGCTATGACCAGGACGACGGCGGTGG
TGATGCTTGGAAGTACGCCTTAAGGCCAAGCGTGGAGACCCTTTATTTCA
CATGTTTTACTCAGCATTCGCAAGTGATGATTCCGGAGGTGCTCCGTTTC
GTAAGGCGTGCCCAGCAATTGCAGCTGACCCCGGAATCTGACCTGAAGGC
CATTCTACTGAAAGACGCTATCTACAATGCCGTAGGCCAGGCAGCCTTTC
ATTTCTTTAACAAGCTGGACTTTGGCGCATGGCTGACATCCCAATTGCTT
GCGGAGCTGCGCGTGGAAGCTCTGAACTTTCGGATCCTACGGCGTCGCAT
CATCTGGCTGGTAGGCCATTGGGTTGGCGTCCAGTTGCCCAGAGAACTGA
GACCGCTGGCTTACGAAGCATGCCTGCATCTTCTCCGGCCGCAGGAGGAC
ATGCCCACCAGGTTGGCCGCTGCCAGGACGTTGAATCTGTTGATCGACGA
TTTTGAGTTTATGCCGGAAGCGTTCCACCCGTATTTTCCATCCCTCTTCG
AGGCCCTCTTTTTGCTGCTCCATGAGGCCGGCGAGTGCGACACCAAGATC
GTGGTGCTGGGCACGATGACGCTACTTGTGGAGAAGATGAGCGAGTACAT
CGAGCCGCAGGCATTGCAGTTCATTGCGTATTTACCCCTCCTGTGGCGCG
AGAGCGAGGAACACGACCTTCTGCGCTGCGCCATCATTGGCACCCTAGAG
CAGCTGGTTCGAACGATACGGGATGTCCCAGAGCCCATGAAGCCCTTCCT
CTACAGCGTGATCGAGCTGAGCACGGATCTTCAGCAACCCTCGCACGTCT
ACCTCATCGAAGATGGTATCATGCTCTGGCTGGCGGTGATTGGGAACTCG
ACTGCACTGACACCCGAACTACTTGGTCTGTGCGACCACCTTCTGCCTAT
TATCGAGATGTCATCGGAGAACCTGCGCACCGTGCTGCAGCTGATTCATG
CCTATATACTGCTGGACGCTCAGGCCTATCTGAGTCGTTACGGTGAGGGT
TTCGTGGCCTACTGCGTGCGCTCTTTCGAGGACATACGTGTGGAGGGAAT
AATTGCCATGCTGCGGATCATCGAGACATGCCTGAAAACGGACGCGGCGT
TGGGACTGCGGCTGGTGCGCCCAGCACTGCCCTTTGTCTTCCAGCAGGTG
TGCCTTAAGCAGGAGTATCCCATGACAATGGGATGGTATCTGACCATCGT
GGCCCGCACCCTGCTCATTGACCAGTCTGTTTTCATGTCGGTGGTACAGC
AATTGCCACAAGCGGACGCTTTGGCCCGCATCCTGGACGTTTGGATCGAG
ATGTTCCCAATGGTTCCCGACACGCACGCAGAGAAGAGAAAGCTCTTCTG
CCTGGCCTTCGCCTCGATCTTTGGAAGCAATGAGCTGCTGCTTGCTCGCC
TGCCACATATCCTGCAGCTGGTGGACGAAACGTTGGGCGAAGTGATGGAC
AAGCAGTACGCCGCCACCGAGGAGGGTGCGTCACAGGCCACGCCTCGCTT
CTATGATTCATTGGTCATTCATGACGAACACGAGCTGGACGATCTGCAGC
AGCAGCTGGGCAGTGGCGGCGGTGTCAGCGAGGAATTTCACACCAAGGGC
TACCCGGCCAAGACCTATCACGACGACCGCCACAGGCAGTTGGTGCTCAA
AGATCCCGTTTACAAGATCCCCCTTACCGAGTATCTCAAGTGGCAGCTGC
AGTCGTTGCAGGCACAGCTGGGATCCCAGCGATATGAGCAGGTAATGTGC
TCCGTGGTTCCCGAGGTACGGGAAAGGATTACCATGTACATAGAGCAGAC
TGTGCCCAAGGCCTGTGTGGTGTGCGCGGGCTCCGGCTCCGGATCGGGAG
CGCCTGCGGACAGGACGCTCTCCGAACAGGTGGAGTCCGGCTGAAAGCTT
TCTAGACCAT
BS10492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp11-RA | 3228 | CG33139-PA | 1..3228 | 17..3244 | 16140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp11-RA | 3395 | CG33139-RA | 87..3314 | 17..3244 | 16140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15682805..15684922 | 17..2134 | 10590 | 100 | Plus |
| 2R | 25286936 | 2R | 15686222..15687334 | 2132..3244 | 5565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:11:02 has no hits.
BS10492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:54 Download gff for
BS10492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 1..3228 | 17..3244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:33 Download gff for
BS10492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 83..3317 | 8..3244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:45 Download gff for
BS10492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 87..3313 | 17..3243 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:02 Download gff for
BS10492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 90..3316 | 17..3243 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:39 Download gff for
BS10492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp11-RA | 87..3313 | 17..3243 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:39 Download gff for
BS10492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15682805..15684922 | 17..2134 | 100 | -> | Plus |
| 2R | 15686225..15687333 | 2135..3243 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:45 Download gff for
BS10492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11570310..11572427 | 17..2134 | 100 | -> | Plus |
| arm_2R | 11573730..11574838 | 2135..3243 | 100 | | Plus |
BS10492.pep Sequence
Translation from 16 to 3243
> BS10492.pep
MEMATGAVSGAAAAGAGASVEQLVAQTLQAATNPSHEIVQKAEAQLREWE
QQPGFFPTIARLSMRRGGGGDVVSSTEDSEVKVRWMAAVYLKNGVERYWR
PNSRQELPAEQKQQIREVLLRHYDAEEVPQVALQVAVLLGRLARTDYPRF
WPDLLPTLMKQLQSCGTDGDSALQQRILIVLHYVLKALASRRLMAEQRAF
QELGLQIFGYLAWDIWAPLTTRFLQLVRKDEAMALNALQRAYVVMRTLRK
LVVYGCAKPYKSTDHMNFVEQLFQRLRQCLELRYELKVGSATPGTATILT
ELERFVIKMMKTLNELMERHSVSFARFVPVALEFSFHYVFHEGTALIFDA
GDRINFKNFAIQALNMLKGIMLSGNDSISAPPEGGAHIEDELLASAAQSQ
AKFFTAERVTYICEKIVTHYFLLTQQELEEWQQDPEGYDQDDGGGDAWKY
ALRPSVETLYFTCFTQHSQVMIPEVLRFVRRAQQLQLTPESDLKAILLKD
AIYNAVGQAAFHFFNKLDFGAWLTSQLLAELRVEALNFRILRRRIIWLVG
HWVGVQLPRELRPLAYEACLHLLRPQEDMPTRLAAARTLNLLIDDFEFMP
EAFHPYFPSLFEALFLLLHEAGECDTKIVVLGTMTLLVEKMSEYIEPQAL
QFIAYLPLLWRESEEHDLLRCAIIGTLEQLVRTIRDVPEPMKPFLYSVIE
LSTDLQQPSHVYLIEDGIMLWLAVIGNSTALTPELLGLCDHLLPIIEMSS
ENLRTVLQLIHAYILLDAQAYLSRYGEGFVAYCVRSFEDIRVEGIIAMLR
IIETCLKTDAALGLRLVRPALPFVFQQVCLKQEYPMTMGWYLTIVARTLL
IDQSVFMSVVQQLPQADALARILDVWIEMFPMVPDTHAEKRKLFCLAFAS
IFGSNELLLARLPHILQLVDETLGEVMDKQYAATEEGASQATPRFYDSLV
IHDEHELDDLQQQLGSGGGVSEEFHTKGYPAKTYHDDRHRQLVLKDPVYK
IPLTEYLKWQLQSLQAQLGSQRYEQVMCSVVPEVRERITMYIEQTVPKAC
VVCAGSGSGSGAPADRTLSEQVESG*
BS10492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp11-PA | 1075 | CG33139-PA | 1..1075 | 1..1075 | 5529 | 100 | Plus |
