Clone Sequence Records
BS10494.3prime Sequence
931 bp (835 high quality bases) assembled on 2006-04-19
> BS10494.3prime
ATGGTCTAGAAAGCTTTTACTCGTCCTCAGCTTCGGTGATTGTGGAATTC
ATTATGTGCGTCTCCTTTTTGAACAGTAACTGTCGATGATGTTCTTCGTT
TTGAATCATAACGATACGGTGCTCCAGTTGTGGCGCCAAATCGCATGTGG
ACTGCTCCAGGTCATCCAAGGACGCACGTCGTAACATCTTTTGAGAATTT
CCATGTGTCAAATCCATCGACTTGTTGTGATGGCCCACGGACAATTTGCG
AATGGGCGATGGTCCATCCAGATCCATACTATCCAGGCACTGCACCAGAC
TATGCCTCCGGGAAAGGGTCACCAGCGACTGGCGGTGCTTAGTGTTTTGT
CCACACTTCCTCGAATTGATGGCCTTGAAATGGTTCTGCAGAGTTATTCC
CAACTCCGGGCAAGCATCATCATCCATCAGCACAGTTGCATCCTTGAACA
TGGTGTAGCCATCACAGCCCATGAAGATATAACTCTTGACGCACAACTTG
TATGATTGCTCCAGGTTAAGGTACTCATCGCCCACCTGGATAAGTTGCGG
ATCAATACGTTTGCCAGGCTCCGCCTGCGGATCGAAGGCGAAACTGATGC
CCGACACCTGGGGGAACCTGCCCTCCAGCTTGGGATAGGCAGACACTCCG
TTCTCCAGTGCTTGCCAGAGTATTTTACCCTTCACTTCGAGCAGGATTAG
TGGGTCACGCATGGGAATAACGTTCACCAGATCGCCCATGGTAAAGGCAC
CCACCGGATGCACTCGATCCGAACGGAAGGTGCCACCATTCANGATGACC
ACATCGGCGCCAACGGCGGCAAGCACCACGTCGCACACCCAGTTGCCCAG
ATTTGTTTCCTGNNGTCGTACGCGGGAAAACGGCCATCCATTCCACGCTA
AAGACACCCATGACATCCGAAAGCTTGCTCT
BS10494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11883-PB | 2142 | CG11883-RB | 1279..2142 | 880..17 | 4238 | 99.5 | Minus |
CG11883-PA | 2199 | CG11883-RA | 1279..2138 | 880..21 | 4218 | 99.5 | Minus |
CG11883-PB | 2142 | CG11883-RB | 1226..1267 | 931..890 | 210 | 100 | Minus |
CG11883-PA | 2199 | CG11883-RA | 1226..1267 | 931..890 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11883-RD | 3895 | CG11883-RD | 1760..2677 | 931..16 | 4492 | 99.3 | Minus |
CG11883-RC | 2866 | CG11883-RC | 1548..2465 | 931..16 | 4492 | 99.3 | Minus |
CG11883-RB | 2870 | CG11883-RB | 1552..2469 | 931..16 | 4492 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10639477..10639982 | 931..428 | 2382 | 98.8 | Minus |
2R | 25286936 | 2R | 10640041..10640285 | 432..188 | 1210 | 99.6 | Minus |
2R | 25286936 | 2R | 10640350..10640449 | 191..92 | 500 | 100 | Minus |
2R | 25286936 | 2R | 10640514..10640589 | 91..16 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:43:30 has no hits.
BS10494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:39 Download gff for
BS10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-PB | 1226..2142 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:04 Download gff for
BS10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-PB | 1226..2142 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:59 Download gff for
BS10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RB | 1552..2469 | 16..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:51:26 Download gff for
BS10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RB | 1552..2469 | 16..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:51:26 Download gff for
BS10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10639477..10639982 | 428..931 | 98 | -> | Minus |
2R | 10640046..10640285 | 188..427 | 100 | -> | Minus |
2R | 10640354..10640449 | 92..187 | 100 | -> | Minus |
2R | 10640514..10640589 | 16..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:59 Download gff for
BS10494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6526982..6527487 | 428..931 | 98 | -> | Minus |
arm_2R | 6527551..6527790 | 188..427 | 100 | -> | Minus |
arm_2R | 6527859..6527954 | 92..187 | 100 | -> | Minus |
arm_2R | 6528019..6528094 | 16..91 | 100 | | Minus |
BS10494.5prime Sequence
869 bp (799 high quality bases) assembled on 2006-04-19
> BS10494.5prime
GAAGTTATCAGTCGACATGCTGCAGAGCAGCAACCCCAACTTTCGATCCC
TGGACCTATCTCTGGGCACGCCCACACCAACCACACCCACCTCCAGCGAA
ATTCCAGCTGCTCCAGCCAGTGCCACCGCCTCGTTGAGTGGCTCAACGCT
GCAATTTGGACCAGAGGAACCAGAGGAAGGTTCAGCTGCCGGAGGAAGCC
AATCGCTGACGCCACTTGATGCCAGGGAACTCCTGACGAGACCCACACGC
GCCTACGCCTCCGTCAGCCAACCACAAAGTCCAAGACATCGGGGATCGGG
GTGCGGGTCCGTTTCCGGATCACGAATAATCACACACGGCCTGACCGGAC
GCTCCACATCGATATCCTCGCAGCTGGAGAAGACCAAGAAGCTACTGAAA
ATGACCGAGGGCGAGGACAAGCCACTGACCATTCTGCACTACAACGATGT
CTACAATATTGAGTCTATGGCGGAAACGGAACCCGTTGGAGGTGCGGCCA
GATTTGCCACGGCCATCAAGAGTTTCGCGCATCTTAATCCGCTCGTGCTC
TTCAGCGGTGATGCCTTCTCGCCGAGTATGTTGAGCACCTTTACCCAAGG
AGAACAGATGATTCCTGTGCTCAATACGGTGGGAACTCACTGTGCCGTCT
TTGGCAACCACGATTTTGATCACGGCTTGGATGTGCTGGTCAAACTGATC
AAACAGACAGAATTCCCCTGGCTCATGTCCAATGTGGTGGACAATGAAAC
CGGTCGTCCATTGNGTGGTGGCAAGATCTCGCACTTCATACTACACAATC
AGATATCCATTGGCTTGATTGGACTGGTGGAGCGAGAATGGTTGGAGACT
CTGCCCACCATCGATCCGA
BS10494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11883-PA | 2199 | CG11883-RA | 1..853 | 17..869 | 4246 | 99.8 | Plus |
CG11883-PB | 2142 | CG11883-RB | 1..853 | 17..869 | 4246 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11883-RD | 3895 | CG11883-RD | 535..1387 | 17..869 | 4254 | 99.9 | Plus |
CG11883-RC | 2866 | CG11883-RC | 323..1175 | 17..869 | 4254 | 99.9 | Plus |
CG11883-RB | 2870 | CG11883-RB | 327..1179 | 17..869 | 4254 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10637998..10638562 | 17..581 | 2825 | 100 | Plus |
2R | 25286936 | 2R | 10638765..10638966 | 668..869 | 999 | 99.5 | Plus |
2R | 25286936 | 2R | 10638626..10638712 | 582..668 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:44:13 has no hits.
BS10494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:40 Download gff for
BS10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-PB | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:06 Download gff for
BS10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-PB | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:21 Download gff for
BS10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RB | 320..1178 | 5..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:13 Download gff for
BS10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RB | 320..1178 | 5..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:13 Download gff for
BS10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10637991..10638562 | 5..581 | 99 | -> | Plus |
2R | 10638626..10638712 | 582..668 | 100 | -> | Plus |
2R | 10638766..10638965 | 669..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:21 Download gff for
BS10494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6525496..6526067 | 5..581 | 99 | -> | Plus |
arm_2R | 6526131..6526217 | 582..668 | 100 | -> | Plus |
arm_2R | 6526271..6526470 | 669..868 | 99 | | Plus |
BS10494.complete Sequence
2174 bp assembled on 2008-08-14
GenBank Submission: FJ636686
> BS10494.complete
GAAGTTATCAGTCGACATGCTGCAGAGCAGCAACCCCAACTTTCGATCCC
TGGACCTATCTCTGGGCACGCCCACACCAACCACACCCACCTCCAGCGAA
ATTCCAGCTGCTCCAGCCAGTGCCACCGCCTCGTTGAGTGGCTCAACGCT
GCAATTTGGACCAGAGGAACCAGAGGAAGGTTCAGCTGCCGGAGGAAGCC
AATCGCTGACGCCACTTGATGCCAGGGAACTCCTGACGAGACCCACACGC
GCCTACGCCTCCGTCAGCCAACCACAAAGTCCAAGACATCGGGGATCGGG
GTGCGGGTCCGTTTCCGGATCACGAATAATCACACACGGCCTGACCGGAC
GCTCCACATCGATATCCTCGCAGCTGGAGAAGACCAAGAAGCTACTGAAA
ATGACCGAGGGCGAGGACAAGCCACTGACCATTCTGCACTACAACGATGT
CTACAATATTGAGTCTATGGCGGAAACGGAACCCGTTGGAGGTGCGGCCA
GATTTGCCACGGCCATCAAGAGTTTCGCGCATCTTAATCCGCTCGTGCTC
TTCAGCGGTGATGCCTTCTCGCCGAGTATGTTGAGCACCTTTACCCAAGG
AGAACAGATGATTCCTGTGCTCAATACGGTGGGAACTCACTGTGCCGTCT
TTGGCAACCACGATTTTGATCACGGCTTGGATGTGCTGGTCAAACTGATC
AAACAGACAGAATTCCCCTGGCTCATGTCCAATGTGGTGGACAATGAAAC
CGGTCGTCCATTGGGTGGTGGCAAGATCTCGCACTTCATACTACACAATC
AGATATCCATTGGCTTGATTGGACTGGTGGAGCGAGAATGGTTGGAGACT
CTGCCCACCATCGATCCGAATGAGGTGACCTACATTGATTACGTGGAGGC
GGGAAATAAGCTTGCCCGCGAGCTGAGAAACGAGGGATGTGACCTCATCA
TTGCCCTTACCCACATGCGTACTCCCAACGATATTAATCTGGCCGAGAAA
TGCAACGGCATCGATATTATACTCGGTGGTCACGATCACGTCCGCGAGGT
CACCGAAATCAATGGCAAAATGATTGTCAAATCAGGCACGGACTTCCAGC
AATTCTCCGTCATCACTATCGAGCGGGATGCCGCCAATCGTGAACATTTC
ACAACGGACGTCAAGTGCTTCGATGTGACGGCCAAAATTCCGGAGGATCC
GGAACTGAAACAGGAGCTCTCCAAATATGCCAAGTTCATCGAGAGCAAGC
TTTCGGATGTCATGGGTGTCTTTAGCGTGGAATTGGATGGCCGTTTTTCC
CGCGTACGAACCCAGGAAACAAATCTGGGCAACTGGGTGTGCGACGTGGT
GCTTGCCGCCGTTGGCGCCGATGTGGTCATCCTGAATGGTGGCACCTTCC
GTTCGGATCGAGTGCATCCGGTGGGTGCCTTTACCATGGGCGATCTGGTG
AACGTTATTCCCATGCGTGACCCACTAATCCTGCTCGAAGTGAAGGGTAA
AATACTCTGGCAAGCACTGGAGAACGGAGTGTCTGCCTATCCCAAGCTGG
AGGGCAGGTTCCCCCAGGTGTCGGGCATCAGTTTCGCCTTCGATCCGCAG
GCGGAGCCTGGCAAACGTATTGATCCGCAACTTATCCAGGTGGGCGATGA
GTACCTTAACCTGGAGCAATCATACAAGTTGTGCGTCAAGAGTTATATCT
TCATGGGCTGTGATGGCTACACCATGTTCAAGGATGCAACTGTGCTGATG
GATGATGATGCTTGCCCGGAGTTGGGAATAACTCTGCAGAACCATTTCAA
GGCCATCAATTCGAGGAAGTGTGGACAAAACACTAAGCACCGCCAGTCGC
TGGTGACCCTTTCCCGGAGGCATAGTCTGGTGCAGTGCCTGGATAGTATG
GATCTGGATGGACCATCGCCCATTCGCAAATTGTCCGTGGGCCATCACAA
CAAGTCGATGGATTTGACACATGGAAATTCTCAAAAGATGTTACGACGTG
CGTCCTTGGATGACCTGGAGCAGTCCACATGCGATTTGGCGCCACAACTG
GAGCACCGTATCGTTATGATTCAAAACGAAGAACATCATCGACAGTTACT
GTTCAAAAAGGAGACGCACATAATGAATTCCACAATCACCGAAGCTGAGG
ACGAGTAAAAGCTTTCTAGACCAT
BS10494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11883-RD | 2379 | CG11883-PD | 238..2379 | 17..2158 | 10710 | 100 | Plus |
CG11883-RC | 2379 | CG11883-PC | 238..2379 | 17..2158 | 10710 | 100 | Plus |
CG11883-RB | 2142 | CG11883-PB | 1..2142 | 17..2158 | 10710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11883-RD | 3895 | CG11883-RD | 535..2677 | 17..2159 | 10715 | 100 | Plus |
CG11883-RC | 2866 | CG11883-RC | 323..2465 | 17..2159 | 10715 | 100 | Plus |
CG11883-RB | 2870 | CG11883-RB | 327..2469 | 17..2159 | 10715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10637998..10638562 | 17..581 | 2825 | 100 | Plus |
2R | 25286936 | 2R | 10638765..10639329 | 668..1232 | 2825 | 100 | Plus |
2R | 25286936 | 2R | 10639468..10639982 | 1233..1747 | 2575 | 100 | Plus |
2R | 25286936 | 2R | 10640041..10640285 | 1743..1987 | 1210 | 99.6 | Plus |
2R | 25286936 | 2R | 10640350..10640449 | 1984..2083 | 500 | 100 | Plus |
2R | 25286936 | 2R | 10638626..10638712 | 582..668 | 435 | 100 | Plus |
2R | 25286936 | 2R | 10640514..10640589 | 2084..2159 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:36:24 has no hits.
BS10494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:49 Download gff for
BS10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RC | 231..2380 | 5..2159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:23 Download gff for
BS10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RB | 327..2466 | 17..2156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:19 Download gff for
BS10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RC | 238..2377 | 17..2156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:39 Download gff for
BS10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11883-RB | 327..2466 | 17..2156 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:39 Download gff for
BS10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10640354..10640449 | 1988..2083 | 100 | -> | Plus |
2R | 10640514..10640586 | 2084..2156 | 100 | | Plus |
2R | 10637998..10638562 | 17..581 | 100 | -> | Plus |
2R | 10638626..10638712 | 582..668 | 100 | -> | Plus |
2R | 10638766..10639329 | 669..1232 | 100 | -> | Plus |
2R | 10639468..10639982 | 1233..1747 | 100 | -> | Plus |
2R | 10640046..10640285 | 1748..1987 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:23 Download gff for
BS10494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6527859..6527954 | 1988..2083 | 100 | -> | Plus |
arm_2R | 6528019..6528091 | 2084..2156 | 100 | | Plus |
arm_2R | 6525503..6526067 | 17..581 | 100 | -> | Plus |
arm_2R | 6526131..6526217 | 582..668 | 100 | -> | Plus |
arm_2R | 6526271..6526834 | 669..1232 | 100 | -> | Plus |
arm_2R | 6526973..6527487 | 1233..1747 | 100 | -> | Plus |
arm_2R | 6527551..6527790 | 1748..1987 | 100 | -> | Plus |
BS10494.pep Sequence
Translation from 16 to 2157
> BS10494.pep
MLQSSNPNFRSLDLSLGTPTPTTPTSSEIPAAPASATASLSGSTLQFGPE
EPEEGSAAGGSQSLTPLDARELLTRPTRAYASVSQPQSPRHRGSGCGSVS
GSRIITHGLTGRSTSISSQLEKTKKLLKMTEGEDKPLTILHYNDVYNIES
MAETEPVGGAARFATAIKSFAHLNPLVLFSGDAFSPSMLSTFTQGEQMIP
VLNTVGTHCAVFGNHDFDHGLDVLVKLIKQTEFPWLMSNVVDNETGRPLG
GGKISHFILHNQISIGLIGLVEREWLETLPTIDPNEVTYIDYVEAGNKLA
RELRNEGCDLIIALTHMRTPNDINLAEKCNGIDIILGGHDHVREVTEING
KMIVKSGTDFQQFSVITIERDAANREHFTTDVKCFDVTAKIPEDPELKQE
LSKYAKFIESKLSDVMGVFSVELDGRFSRVRTQETNLGNWVCDVVLAAVG
ADVVILNGGTFRSDRVHPVGAFTMGDLVNVIPMRDPLILLEVKGKILWQA
LENGVSAYPKLEGRFPQVSGISFAFDPQAEPGKRIDPQLIQVGDEYLNLE
QSYKLCVKSYIFMGCDGYTMFKDATVLMDDDACPELGITLQNHFKAINSR
KCGQNTKHRQSLVTLSRRHSLVQCLDSMDLDGPSPIRKLSVGHHNKSMDL
THGNSQKMLRRASLDDLEQSTCDLAPQLEHRIVMIQNEEHHRQLLFKKET
HIMNSTITEAEDE*
BS10494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11883-PD | 792 | CG11883-PD | 80..792 | 1..713 | 3700 | 100 | Plus |
CG11883-PC | 792 | CG11883-PC | 80..792 | 1..713 | 3700 | 100 | Plus |
CG11883-PB | 713 | CG11883-PB | 1..713 | 1..713 | 3700 | 100 | Plus |
CG11883-PA | 732 | CG11883-PA | 1..713 | 1..713 | 3697 | 99.9 | Plus |
CG30103-PA | 584 | CG30103-PA | 28..513 | 138..569 | 285 | 23.8 | Plus |