Clone BS10494 Report

Search the DGRC for BS10494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:104
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG11883-RB
Protein status:BS10494.pep: full length peptide match
Sequenced Size:2174

Clone Sequence Records

BS10494.3prime Sequence

931 bp (835 high quality bases) assembled on 2006-04-19

> BS10494.3prime
ATGGTCTAGAAAGCTTTTACTCGTCCTCAGCTTCGGTGATTGTGGAATTC
ATTATGTGCGTCTCCTTTTTGAACAGTAACTGTCGATGATGTTCTTCGTT
TTGAATCATAACGATACGGTGCTCCAGTTGTGGCGCCAAATCGCATGTGG
ACTGCTCCAGGTCATCCAAGGACGCACGTCGTAACATCTTTTGAGAATTT
CCATGTGTCAAATCCATCGACTTGTTGTGATGGCCCACGGACAATTTGCG
AATGGGCGATGGTCCATCCAGATCCATACTATCCAGGCACTGCACCAGAC
TATGCCTCCGGGAAAGGGTCACCAGCGACTGGCGGTGCTTAGTGTTTTGT
CCACACTTCCTCGAATTGATGGCCTTGAAATGGTTCTGCAGAGTTATTCC
CAACTCCGGGCAAGCATCATCATCCATCAGCACAGTTGCATCCTTGAACA
TGGTGTAGCCATCACAGCCCATGAAGATATAACTCTTGACGCACAACTTG
TATGATTGCTCCAGGTTAAGGTACTCATCGCCCACCTGGATAAGTTGCGG
ATCAATACGTTTGCCAGGCTCCGCCTGCGGATCGAAGGCGAAACTGATGC
CCGACACCTGGGGGAACCTGCCCTCCAGCTTGGGATAGGCAGACACTCCG
TTCTCCAGTGCTTGCCAGAGTATTTTACCCTTCACTTCGAGCAGGATTAG
TGGGTCACGCATGGGAATAACGTTCACCAGATCGCCCATGGTAAAGGCAC
CCACCGGATGCACTCGATCCGAACGGAAGGTGCCACCATTCANGATGACC
ACATCGGCGCCAACGGCGGCAAGCACCACGTCGCACACCCAGTTGCCCAG
ATTTGTTTCCTGNNGTCGTACGCGGGAAAACGGCCATCCATTCCACGCTA
AAGACACCCATGACATCCGAAAGCTTGCTCT

BS10494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11883-PB 2142 CG11883-RB 1279..2142 880..17 4238 99.5 Minus
CG11883-PA 2199 CG11883-RA 1279..2138 880..21 4218 99.5 Minus
CG11883-PB 2142 CG11883-RB 1226..1267 931..890 210 100 Minus
CG11883-PA 2199 CG11883-RA 1226..1267 931..890 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11883-RD 3895 CG11883-RD 1760..2677 931..16 4492 99.3 Minus
CG11883-RC 2866 CG11883-RC 1548..2465 931..16 4492 99.3 Minus
CG11883-RB 2870 CG11883-RB 1552..2469 931..16 4492 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10639477..10639982 931..428 2382 98.8 Minus
2R 25286936 2R 10640041..10640285 432..188 1210 99.6 Minus
2R 25286936 2R 10640350..10640449 191..92 500 100 Minus
2R 25286936 2R 10640514..10640589 91..16 380 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:43:30 has no hits.

BS10494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:39 Download gff for BS10494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-PB 1226..2142 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:04 Download gff for BS10494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-PB 1226..2142 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:38:59 Download gff for BS10494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-RB 1552..2469 16..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:51:26 Download gff for BS10494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-RB 1552..2469 16..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:51:26 Download gff for BS10494.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10639477..10639982 428..931 98 -> Minus
2R 10640046..10640285 188..427 100 -> Minus
2R 10640354..10640449 92..187 100 -> Minus
2R 10640514..10640589 16..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:38:59 Download gff for BS10494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6526982..6527487 428..931 98 -> Minus
arm_2R 6527551..6527790 188..427 100 -> Minus
arm_2R 6527859..6527954 92..187 100 -> Minus
arm_2R 6528019..6528094 16..91 100   Minus

BS10494.5prime Sequence

869 bp (799 high quality bases) assembled on 2006-04-19

> BS10494.5prime
GAAGTTATCAGTCGACATGCTGCAGAGCAGCAACCCCAACTTTCGATCCC
TGGACCTATCTCTGGGCACGCCCACACCAACCACACCCACCTCCAGCGAA
ATTCCAGCTGCTCCAGCCAGTGCCACCGCCTCGTTGAGTGGCTCAACGCT
GCAATTTGGACCAGAGGAACCAGAGGAAGGTTCAGCTGCCGGAGGAAGCC
AATCGCTGACGCCACTTGATGCCAGGGAACTCCTGACGAGACCCACACGC
GCCTACGCCTCCGTCAGCCAACCACAAAGTCCAAGACATCGGGGATCGGG
GTGCGGGTCCGTTTCCGGATCACGAATAATCACACACGGCCTGACCGGAC
GCTCCACATCGATATCCTCGCAGCTGGAGAAGACCAAGAAGCTACTGAAA
ATGACCGAGGGCGAGGACAAGCCACTGACCATTCTGCACTACAACGATGT
CTACAATATTGAGTCTATGGCGGAAACGGAACCCGTTGGAGGTGCGGCCA
GATTTGCCACGGCCATCAAGAGTTTCGCGCATCTTAATCCGCTCGTGCTC
TTCAGCGGTGATGCCTTCTCGCCGAGTATGTTGAGCACCTTTACCCAAGG
AGAACAGATGATTCCTGTGCTCAATACGGTGGGAACTCACTGTGCCGTCT
TTGGCAACCACGATTTTGATCACGGCTTGGATGTGCTGGTCAAACTGATC
AAACAGACAGAATTCCCCTGGCTCATGTCCAATGTGGTGGACAATGAAAC
CGGTCGTCCATTGNGTGGTGGCAAGATCTCGCACTTCATACTACACAATC
AGATATCCATTGGCTTGATTGGACTGGTGGAGCGAGAATGGTTGGAGACT
CTGCCCACCATCGATCCGA

BS10494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11883-PA 2199 CG11883-RA 1..853 17..869 4246 99.8 Plus
CG11883-PB 2142 CG11883-RB 1..853 17..869 4246 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11883-RD 3895 CG11883-RD 535..1387 17..869 4254 99.9 Plus
CG11883-RC 2866 CG11883-RC 323..1175 17..869 4254 99.9 Plus
CG11883-RB 2870 CG11883-RB 327..1179 17..869 4254 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10637998..10638562 17..581 2825 100 Plus
2R 25286936 2R 10638765..10638966 668..869 999 99.5 Plus
2R 25286936 2R 10638626..10638712 582..668 435 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:44:13 has no hits.

BS10494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:41:40 Download gff for BS10494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-PB 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:06 Download gff for BS10494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-PB 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:54:21 Download gff for BS10494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-RB 320..1178 5..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:13 Download gff for BS10494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11883-RB 320..1178 5..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:13 Download gff for BS10494.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10637991..10638562 5..581 99 -> Plus
2R 10638626..10638712 582..668 100 -> Plus
2R 10638766..10638965 669..868 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:54:21 Download gff for BS10494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6525496..6526067 5..581 99 -> Plus
arm_2R 6526131..6526217 582..668 100 -> Plus
arm_2R 6526271..6526470 669..868 99   Plus

BS10494.complete Sequence

2174 bp assembled on 2008-08-14

GenBank Submission: FJ636686

> BS10494.complete
GAAGTTATCAGTCGACATGCTGCAGAGCAGCAACCCCAACTTTCGATCCC
TGGACCTATCTCTGGGCACGCCCACACCAACCACACCCACCTCCAGCGAA
ATTCCAGCTGCTCCAGCCAGTGCCACCGCCTCGTTGAGTGGCTCAACGCT
GCAATTTGGACCAGAGGAACCAGAGGAAGGTTCAGCTGCCGGAGGAAGCC
AATCGCTGACGCCACTTGATGCCAGGGAACTCCTGACGAGACCCACACGC
GCCTACGCCTCCGTCAGCCAACCACAAAGTCCAAGACATCGGGGATCGGG
GTGCGGGTCCGTTTCCGGATCACGAATAATCACACACGGCCTGACCGGAC
GCTCCACATCGATATCCTCGCAGCTGGAGAAGACCAAGAAGCTACTGAAA
ATGACCGAGGGCGAGGACAAGCCACTGACCATTCTGCACTACAACGATGT
CTACAATATTGAGTCTATGGCGGAAACGGAACCCGTTGGAGGTGCGGCCA
GATTTGCCACGGCCATCAAGAGTTTCGCGCATCTTAATCCGCTCGTGCTC
TTCAGCGGTGATGCCTTCTCGCCGAGTATGTTGAGCACCTTTACCCAAGG
AGAACAGATGATTCCTGTGCTCAATACGGTGGGAACTCACTGTGCCGTCT
TTGGCAACCACGATTTTGATCACGGCTTGGATGTGCTGGTCAAACTGATC
AAACAGACAGAATTCCCCTGGCTCATGTCCAATGTGGTGGACAATGAAAC
CGGTCGTCCATTGGGTGGTGGCAAGATCTCGCACTTCATACTACACAATC
AGATATCCATTGGCTTGATTGGACTGGTGGAGCGAGAATGGTTGGAGACT
CTGCCCACCATCGATCCGAATGAGGTGACCTACATTGATTACGTGGAGGC
GGGAAATAAGCTTGCCCGCGAGCTGAGAAACGAGGGATGTGACCTCATCA
TTGCCCTTACCCACATGCGTACTCCCAACGATATTAATCTGGCCGAGAAA
TGCAACGGCATCGATATTATACTCGGTGGTCACGATCACGTCCGCGAGGT
CACCGAAATCAATGGCAAAATGATTGTCAAATCAGGCACGGACTTCCAGC
AATTCTCCGTCATCACTATCGAGCGGGATGCCGCCAATCGTGAACATTTC
ACAACGGACGTCAAGTGCTTCGATGTGACGGCCAAAATTCCGGAGGATCC
GGAACTGAAACAGGAGCTCTCCAAATATGCCAAGTTCATCGAGAGCAAGC
TTTCGGATGTCATGGGTGTCTTTAGCGTGGAATTGGATGGCCGTTTTTCC
CGCGTACGAACCCAGGAAACAAATCTGGGCAACTGGGTGTGCGACGTGGT
GCTTGCCGCCGTTGGCGCCGATGTGGTCATCCTGAATGGTGGCACCTTCC
GTTCGGATCGAGTGCATCCGGTGGGTGCCTTTACCATGGGCGATCTGGTG
AACGTTATTCCCATGCGTGACCCACTAATCCTGCTCGAAGTGAAGGGTAA
AATACTCTGGCAAGCACTGGAGAACGGAGTGTCTGCCTATCCCAAGCTGG
AGGGCAGGTTCCCCCAGGTGTCGGGCATCAGTTTCGCCTTCGATCCGCAG
GCGGAGCCTGGCAAACGTATTGATCCGCAACTTATCCAGGTGGGCGATGA
GTACCTTAACCTGGAGCAATCATACAAGTTGTGCGTCAAGAGTTATATCT
TCATGGGCTGTGATGGCTACACCATGTTCAAGGATGCAACTGTGCTGATG
GATGATGATGCTTGCCCGGAGTTGGGAATAACTCTGCAGAACCATTTCAA
GGCCATCAATTCGAGGAAGTGTGGACAAAACACTAAGCACCGCCAGTCGC
TGGTGACCCTTTCCCGGAGGCATAGTCTGGTGCAGTGCCTGGATAGTATG
GATCTGGATGGACCATCGCCCATTCGCAAATTGTCCGTGGGCCATCACAA
CAAGTCGATGGATTTGACACATGGAAATTCTCAAAAGATGTTACGACGTG
CGTCCTTGGATGACCTGGAGCAGTCCACATGCGATTTGGCGCCACAACTG
GAGCACCGTATCGTTATGATTCAAAACGAAGAACATCATCGACAGTTACT
GTTCAAAAAGGAGACGCACATAATGAATTCCACAATCACCGAAGCTGAGG
ACGAGTAAAAGCTTTCTAGACCAT

BS10494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11883-RD 2379 CG11883-PD 238..2379 17..2158 10710 100 Plus
CG11883-RC 2379 CG11883-PC 238..2379 17..2158 10710 100 Plus
CG11883-RB 2142 CG11883-PB 1..2142 17..2158 10710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11883-RD 3895 CG11883-RD 535..2677 17..2159 10715 100 Plus
CG11883-RC 2866 CG11883-RC 323..2465 17..2159 10715 100 Plus
CG11883-RB 2870 CG11883-RB 327..2469 17..2159 10715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10637998..10638562 17..581 2825 100 Plus
2R 25286936 2R 10638765..10639329 668..1232 2825 100 Plus
2R 25286936 2R 10639468..10639982 1233..1747 2575 100 Plus
2R 25286936 2R 10640041..10640285 1743..1987 1210 99.6 Plus
2R 25286936 2R 10640350..10640449 1984..2083 500 100 Plus
2R 25286936 2R 10638626..10638712 582..668 435 100 Plus
2R 25286936 2R 10640514..10640589 2084..2159 380 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:36:24 has no hits.

BS10494.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:49 Download gff for BS10494.complete
Subject Subject Range Query Range Percent Splice Strand
CG11883-RC 231..2380 5..2159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:23 Download gff for BS10494.complete
Subject Subject Range Query Range Percent Splice Strand
CG11883-RB 327..2466 17..2156 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:19 Download gff for BS10494.complete
Subject Subject Range Query Range Percent Splice Strand
CG11883-RC 238..2377 17..2156 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:39 Download gff for BS10494.complete
Subject Subject Range Query Range Percent Splice Strand
CG11883-RB 327..2466 17..2156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:39 Download gff for BS10494.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10640354..10640449 1988..2083 100 -> Plus
2R 10640514..10640586 2084..2156 100   Plus
2R 10637998..10638562 17..581 100 -> Plus
2R 10638626..10638712 582..668 100 -> Plus
2R 10638766..10639329 669..1232 100 -> Plus
2R 10639468..10639982 1233..1747 100 -> Plus
2R 10640046..10640285 1748..1987 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:23 Download gff for BS10494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6527859..6527954 1988..2083 100 -> Plus
arm_2R 6528019..6528091 2084..2156 100   Plus
arm_2R 6525503..6526067 17..581 100 -> Plus
arm_2R 6526131..6526217 582..668 100 -> Plus
arm_2R 6526271..6526834 669..1232 100 -> Plus
arm_2R 6526973..6527487 1233..1747 100 -> Plus
arm_2R 6527551..6527790 1748..1987 100 -> Plus

BS10494.pep Sequence

Translation from 16 to 2157

> BS10494.pep
MLQSSNPNFRSLDLSLGTPTPTTPTSSEIPAAPASATASLSGSTLQFGPE
EPEEGSAAGGSQSLTPLDARELLTRPTRAYASVSQPQSPRHRGSGCGSVS
GSRIITHGLTGRSTSISSQLEKTKKLLKMTEGEDKPLTILHYNDVYNIES
MAETEPVGGAARFATAIKSFAHLNPLVLFSGDAFSPSMLSTFTQGEQMIP
VLNTVGTHCAVFGNHDFDHGLDVLVKLIKQTEFPWLMSNVVDNETGRPLG
GGKISHFILHNQISIGLIGLVEREWLETLPTIDPNEVTYIDYVEAGNKLA
RELRNEGCDLIIALTHMRTPNDINLAEKCNGIDIILGGHDHVREVTEING
KMIVKSGTDFQQFSVITIERDAANREHFTTDVKCFDVTAKIPEDPELKQE
LSKYAKFIESKLSDVMGVFSVELDGRFSRVRTQETNLGNWVCDVVLAAVG
ADVVILNGGTFRSDRVHPVGAFTMGDLVNVIPMRDPLILLEVKGKILWQA
LENGVSAYPKLEGRFPQVSGISFAFDPQAEPGKRIDPQLIQVGDEYLNLE
QSYKLCVKSYIFMGCDGYTMFKDATVLMDDDACPELGITLQNHFKAINSR
KCGQNTKHRQSLVTLSRRHSLVQCLDSMDLDGPSPIRKLSVGHHNKSMDL
THGNSQKMLRRASLDDLEQSTCDLAPQLEHRIVMIQNEEHHRQLLFKKET
HIMNSTITEAEDE*

BS10494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11883-PD 792 CG11883-PD 80..792 1..713 3700 100 Plus
CG11883-PC 792 CG11883-PC 80..792 1..713 3700 100 Plus
CG11883-PB 713 CG11883-PB 1..713 1..713 3700 100 Plus
CG11883-PA 732 CG11883-PA 1..713 1..713 3697 99.9 Plus
CG30103-PA 584 CG30103-PA 28..513 138..569 285 23.8 Plus