Clone Sequence Records
BS10509.3prime Sequence
967 bp (853 high quality bases) assembled on 2006-04-19
> BS10509.3prime
ATGGTCTAGAAAGCTTCTATAACAATTCATATTGACGAAGGTGCATCCTT
TGAATAATGTCTCTGCAATCATTAAACACACGTTTAATGTTTTCTGTGTC
AACGGCGCATGTGAAATGTGGATAGCAGTAGTGTTTTCCGTCTCCGCTAG
CGGTAGATATACGCAGAAACTCGTCTCGTATGAAATATTTTGCTCGTATT
ACTTCTGGGTCATCATTGGATTCCATTATTGCGTCACCTGTGTCGATTGG
CGTTTGGTATTTGTTAAACTCGGAGAAATATTCCGACAATTTACTTTTTC
CAGCCTTAATTTTCTCTGCTAACAAATCTTGCTTATTTAAAAATAGTATA
ATAGAAATCGTGCGAAGCCATCTGTTGTTCCAAATACTCTTGAACAAATC
CAAAGATTCTCGAAGTCGGTTCTGGGTGGGATCTTCCCGCAAAACCATGT
TATAACTTGAGCACGCAGTTACGAATATGATAGCAGTTACATCATTGAAA
CACTGAATCCATTTCCTACGCTCGTCCCGCTGGCCACCGACATCGAACAT
GTGAAAGTTTACTTTGTCCACTTGAAATCTTGTTTCAAATATTCCAGAAG
TCAAAACACGGCACCGAAGAATATCCTGCTCATTAGGGGTGTAGTTTGGA
TTCTTGATTGTGCTCACTCGGTCCAGGAAGTATTTCGCACAATCGATTAA
TTGATACTCATTCGACCTCTCATAGGTTTGAAGAACGCCCTTGTCTTTCC
ATAGTTCTTCTGTATGTTCATAAAATTCAGGAGGATAATTAAAGTCCGGA
CTAGATGCATAATCCTGAATGTACTCCACTCTGGGTTCATTTTCCTTCTT
TTCTAAAGCTACAGGTGGATTAAGTGTGCTCATGGCTCCTGTAATAGTCA
AGATAGCGTCTCGAATATTCTTTTTATATCATCAATTTTCTGTTTCTTTT
TCGAGTCAAAAAATCCG
BS10509.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2835-PB | 1158 | G-salpha60A-RB | 249..1158 | 926..17 | 4550 | 100 | Minus |
CG2835-PC | 1149 | G-salpha60A-RC | 249..928 | 926..247 | 3400 | 100 | Minus |
CG2835-PA | 1149 | G-salpha60A-RA | 249..928 | 926..247 | 3400 | 100 | Minus |
CG2835-PC | 1149 | G-salpha60A-RC | 929..1149 | 237..17 | 1105 | 100 | Minus |
CG2835-PA | 1149 | G-salpha60A-RA | 929..1149 | 237..17 | 1105 | 100 | Minus |
CG2835-PB | 1158 | G-salpha60A-RB | 207..248 | 967..926 | 160 | 95.2 | Minus |
CG2835-PC | 1149 | G-salpha60A-RC | 207..248 | 967..926 | 160 | 95.2 | Minus |
CG2835-PA | 1149 | G-salpha60A-RA | 207..248 | 967..926 | 160 | 95.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RD | 1646 | CG2835-RD | 506..1457 | 967..17 | 4705 | 99.7 | Minus |
Galphas-RB | 1859 | CG2835-RB | 719..1670 | 967..17 | 4705 | 99.7 | Minus |
Galphas-RE | 1826 | CG2835-RE | 695..1637 | 967..17 | 4560 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23945898..23946077 | 551..372 | 900 | 100 | Minus |
2R | 25286936 | 2R | 23946600..23946747 | 164..17 | 740 | 100 | Minus |
2R | 25286936 | 2R | 23945696..23945824 | 680..552 | 645 | 100 | Minus |
2R | 25286936 | 2R | 23946134..23946261 | 374..247 | 640 | 100 | Minus |
2R | 25286936 | 2R | 23944960..23945080 | 801..681 | 605 | 100 | Minus |
2R | 25286936 | 2R | 23944806..23944905 | 899..800 | 500 | 100 | Minus |
2R | 25286936 | 2R | 23946438..23946520 | 246..164 | 415 | 100 | Minus |
2R | 25286936 | 2R | 23944671..23944740 | 967..899 | 270 | 95.7 | Minus |
Blast to na_te.dros performed 2015-02-12 18:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 4470..4532 | 952..890 | 135 | 68.3 | Minus |
BS10509.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:00 Download gff for
BS10509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PB | 207..1158 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:35 Download gff for
BS10509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PB | 207..1158 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:49 Download gff for
BS10509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 719..1673 | 11..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:13 Download gff for
BS10509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 719..1673 | 11..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:13 Download gff for
BS10509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23946601..23946750 | 11..163 | 98 | | Minus |
2R | 23944671..23944740 | 899..967 | 95 | -> | Minus |
2R | 23944807..23944903 | 802..898 | 100 | -> | Minus |
2R | 23944960..23945080 | 681..801 | 100 | -> | Minus |
2R | 23945696..23945824 | 552..680 | 100 | -> | Minus |
2R | 23945898..23946077 | 372..551 | 100 | -> | Minus |
2R | 23946137..23946261 | 247..371 | 100 | -> | Minus |
2R | 23946438..23946520 | 164..246 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:49 Download gff for
BS10509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19832194..19832263 | 899..967 | 95 | -> | Minus |
arm_2R | 19832330..19832426 | 802..898 | 100 | -> | Minus |
arm_2R | 19832483..19832603 | 681..801 | 100 | -> | Minus |
arm_2R | 19833219..19833347 | 552..680 | 100 | -> | Minus |
arm_2R | 19833421..19833600 | 372..551 | 100 | -> | Minus |
arm_2R | 19833660..19833784 | 247..371 | 100 | -> | Minus |
arm_2R | 19833961..19834043 | 164..246 | 100 | -> | Minus |
arm_2R | 19834124..19834273 | 11..163 | 98 | | Minus |
BS10509.5prime Sequence
851 bp (743 high quality bases) assembled on 2006-04-19
> BS10509.5prime
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGANATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
T
BS10509.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2835-PC | 1149 | G-salpha60A-RC | 1..835 | 17..851 | 4156 | 99.8 | Plus |
CG2835-PB | 1158 | G-salpha60A-RB | 1..835 | 17..851 | 4156 | 99.8 | Plus |
CG2835-PA | 1149 | G-salpha60A-RA | 1..835 | 17..851 | 4156 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RE | 1826 | CG2835-RE | 489..1323 | 17..851 | 4164 | 99.9 | Plus |
Galphas-RD | 1646 | CG2835-RD | 300..1134 | 17..851 | 4164 | 99.9 | Plus |
Galphas-RA | 1850 | CG2835-RA | 513..1347 | 17..851 | 4164 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23944465..23944740 | 17..292 | 1380 | 100 | Plus |
2R | 25286936 | 2R | 23945898..23946077 | 640..819 | 889 | 99.4 | Plus |
2R | 25286936 | 2R | 23945696..23945824 | 511..639 | 645 | 100 | Plus |
2R | 25286936 | 2R | 23944960..23945080 | 390..510 | 605 | 100 | Plus |
2R | 25286936 | 2R | 23944806..23944905 | 292..391 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:20:36 has no hits.
BS10509.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:01 Download gff for
BS10509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PB | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:36 Download gff for
BS10509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2835-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:11 Download gff for
BS10509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RA | 511..1347 | 13..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:48:01 Download gff for
BS10509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RA | 511..1347 | 13..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:48:01 Download gff for
BS10509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23944463..23944740 | 13..292 | 99 | -> | Plus |
2R | 23944807..23944903 | 293..389 | 100 | -> | Plus |
2R | 23944960..23945080 | 390..510 | 100 | -> | Plus |
2R | 23945696..23945824 | 511..639 | 100 | -> | Plus |
2R | 23945898..23946077 | 640..819 | 99 | -> | Plus |
2R | 23946137..23946168 | 820..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:11 Download gff for
BS10509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19831986..19832263 | 13..292 | 99 | -> | Plus |
arm_2R | 19832330..19832426 | 293..389 | 100 | -> | Plus |
arm_2R | 19832483..19832603 | 390..510 | 100 | -> | Plus |
arm_2R | 19833219..19833347 | 511..639 | 100 | -> | Plus |
arm_2R | 19833421..19833600 | 640..819 | 99 | -> | Plus |
arm_2R | 19833660..19833691 | 820..851 | 100 | | Plus |
BS10509.complete Sequence
1190 bp (1190 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636687
> BS10509.complete
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGAAATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
TTAAATAAGCAAGATTTGTTAGCAGAGAAAATTAAGGCTGGAAAAAGTAA
ATTGTCGGAATATTTCTCCGAGTTTAACAAATACCAAACGCCAATCGACA
CAGGTGACGCAATAATGGAATCCAATGATGACCCAGAAGTAATACGAGCA
AAATATTTCATACGAGACGAGTTTCTGCGTATATCTACCGCTAGCGGAGA
CGGAAAACACTACTGCTATCCACATTTCACATGCGCCGTTGACACAGAAA
ACATTAAACGTGTGTTTAATGATTGCAGAGACATTATTCAAAGGATGCAC
CTTCGTCAATATGAATTGTTATAGAAGCTTTCTAGACCAT
BS10509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RD | 1158 | CG2835-PD | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Galphas-RB | 1158 | CG2835-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Galphas-RE | 1149 | CG2835-PE | 1..1149 | 17..1174 | 5620 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-RD | 1646 | CG2835-RD | 300..1457 | 17..1174 | 5790 | 100 | Plus |
Galphas-RB | 1859 | CG2835-RB | 513..1670 | 17..1174 | 5790 | 100 | Plus |
Galphas-RE | 1826 | CG2835-RE | 489..1637 | 17..1174 | 5620 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23944465..23944740 | 17..292 | 1380 | 100 | Plus |
2R | 25286936 | 2R | 23945898..23946077 | 640..819 | 900 | 100 | Plus |
2R | 25286936 | 2R | 23946600..23946747 | 1027..1174 | 740 | 100 | Plus |
2R | 25286936 | 2R | 23945696..23945824 | 511..639 | 645 | 100 | Plus |
2R | 25286936 | 2R | 23946134..23946261 | 817..944 | 640 | 100 | Plus |
2R | 25286936 | 2R | 23944960..23945080 | 390..510 | 605 | 100 | Plus |
2R | 25286936 | 2R | 23944806..23944905 | 292..391 | 500 | 100 | Plus |
2R | 25286936 | 2R | 23946438..23946520 | 945..1027 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:00:54 has no hits.
BS10509.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:54 Download gff for
BS10509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
G-salpha60A-RB | 1..1158 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:18 Download gff for
BS10509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
G-salpha60A-RB | 508..1670 | 13..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:30 Download gff for
BS10509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 513..1670 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:54 Download gff for
BS10509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
G-salpha60A-RB | 508..1670 | 13..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:24 Download gff for
BS10509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galphas-RB | 513..1670 | 17..1174 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:24 Download gff for
BS10509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23944465..23944740 | 17..292 | 100 | -> | Plus |
2R | 23944807..23944903 | 293..389 | 100 | -> | Plus |
2R | 23944960..23945080 | 390..510 | 100 | -> | Plus |
2R | 23945696..23945824 | 511..639 | 100 | -> | Plus |
2R | 23945898..23946077 | 640..819 | 100 | -> | Plus |
2R | 23946137..23946261 | 820..944 | 100 | -> | Plus |
2R | 23946438..23946520 | 945..1027 | 100 | -> | Plus |
2R | 23946601..23946747 | 1028..1174 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:30 Download gff for
BS10509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834124..19834270 | 1028..1174 | 100 | | Plus |
arm_2R | 19831988..19832263 | 17..292 | 100 | -> | Plus |
arm_2R | 19832330..19832426 | 293..389 | 100 | -> | Plus |
arm_2R | 19832483..19832603 | 390..510 | 100 | -> | Plus |
arm_2R | 19833219..19833347 | 511..639 | 100 | -> | Plus |
arm_2R | 19833421..19833600 | 640..819 | 100 | -> | Plus |
arm_2R | 19833660..19833784 | 820..944 | 100 | -> | Plus |
arm_2R | 19833961..19834043 | 945..1027 | 100 | -> | Plus |
BS10509.pep Sequence
Translation from 16 to 1173
> BS10509.pep
MGCFGSPTSKQSDVNSEDSKSQKRRSDAISRQLQKDKQLYRATHRLLLLG
AGESGKSTIVKQMRILHVDGFSDSEKKQKIDDIKKNIRDAILTITGAMST
LNPPVALEKKENEPRVEYIQDYASSPDFNYPPEFYEHTEELWKDKGVLQT
YERSNEYQLIDCAKYFLDRVSTIKNPNYTPNEQDILRCRVLTSGIFETRF
QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT
QNRLRESLDLFKSIWNNRWLRTISIILFLNKQDLLAEKIKAGKSKLSEYF
SEFNKYQTPIDTGDAIMESNDDPEVIRAKYFIRDEFLRISTASGDGKHYC
YPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL*
BS10509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galphas-PD | 385 | CG2835-PD | 1..385 | 1..385 | 2024 | 100 | Plus |
Galphas-PB | 385 | CG2835-PB | 1..385 | 1..385 | 2024 | 100 | Plus |
Galphas-PE | 382 | CG2835-PE | 1..382 | 1..385 | 1989 | 99 | Plus |
Galphas-PA | 382 | CG2835-PA | 1..382 | 1..385 | 1989 | 99 | Plus |
Galphas-PC | 382 | CG2835-PC | 1..382 | 1..385 | 1989 | 99 | Plus |