Clone BS10509 Report

Search the DGRC for BS10509

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:105
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptGalphas-RB
Protein status:BS10509.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10509.3prime Sequence

967 bp (853 high quality bases) assembled on 2006-04-19

> BS10509.3prime
ATGGTCTAGAAAGCTTCTATAACAATTCATATTGACGAAGGTGCATCCTT
TGAATAATGTCTCTGCAATCATTAAACACACGTTTAATGTTTTCTGTGTC
AACGGCGCATGTGAAATGTGGATAGCAGTAGTGTTTTCCGTCTCCGCTAG
CGGTAGATATACGCAGAAACTCGTCTCGTATGAAATATTTTGCTCGTATT
ACTTCTGGGTCATCATTGGATTCCATTATTGCGTCACCTGTGTCGATTGG
CGTTTGGTATTTGTTAAACTCGGAGAAATATTCCGACAATTTACTTTTTC
CAGCCTTAATTTTCTCTGCTAACAAATCTTGCTTATTTAAAAATAGTATA
ATAGAAATCGTGCGAAGCCATCTGTTGTTCCAAATACTCTTGAACAAATC
CAAAGATTCTCGAAGTCGGTTCTGGGTGGGATCTTCCCGCAAAACCATGT
TATAACTTGAGCACGCAGTTACGAATATGATAGCAGTTACATCATTGAAA
CACTGAATCCATTTCCTACGCTCGTCCCGCTGGCCACCGACATCGAACAT
GTGAAAGTTTACTTTGTCCACTTGAAATCTTGTTTCAAATATTCCAGAAG
TCAAAACACGGCACCGAAGAATATCCTGCTCATTAGGGGTGTAGTTTGGA
TTCTTGATTGTGCTCACTCGGTCCAGGAAGTATTTCGCACAATCGATTAA
TTGATACTCATTCGACCTCTCATAGGTTTGAAGAACGCCCTTGTCTTTCC
ATAGTTCTTCTGTATGTTCATAAAATTCAGGAGGATAATTAAAGTCCGGA
CTAGATGCATAATCCTGAATGTACTCCACTCTGGGTTCATTTTCCTTCTT
TTCTAAAGCTACAGGTGGATTAAGTGTGCTCATGGCTCCTGTAATAGTCA
AGATAGCGTCTCGAATATTCTTTTTATATCATCAATTTTCTGTTTCTTTT
TCGAGTCAAAAAATCCG

BS10509.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2835-PB 1158 G-salpha60A-RB 249..1158 926..17 4550 100 Minus
CG2835-PC 1149 G-salpha60A-RC 249..928 926..247 3400 100 Minus
CG2835-PA 1149 G-salpha60A-RA 249..928 926..247 3400 100 Minus
CG2835-PC 1149 G-salpha60A-RC 929..1149 237..17 1105 100 Minus
CG2835-PA 1149 G-salpha60A-RA 929..1149 237..17 1105 100 Minus
CG2835-PB 1158 G-salpha60A-RB 207..248 967..926 160 95.2 Minus
CG2835-PC 1149 G-salpha60A-RC 207..248 967..926 160 95.2 Minus
CG2835-PA 1149 G-salpha60A-RA 207..248 967..926 160 95.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1646 CG2835-RD 506..1457 967..17 4705 99.7 Minus
Galphas-RB 1859 CG2835-RB 719..1670 967..17 4705 99.7 Minus
Galphas-RE 1826 CG2835-RE 695..1637 967..17 4560 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23945898..23946077 551..372 900 100 Minus
2R 25286936 2R 23946600..23946747 164..17 740 100 Minus
2R 25286936 2R 23945696..23945824 680..552 645 100 Minus
2R 25286936 2R 23946134..23946261 374..247 640 100 Minus
2R 25286936 2R 23944960..23945080 801..681 605 100 Minus
2R 25286936 2R 23944806..23944905 899..800 500 100 Minus
2R 25286936 2R 23946438..23946520 246..164 415 100 Minus
2R 25286936 2R 23944671..23944740 967..899 270 95.7 Minus
Blast to na_te.dros performed 2015-02-12 18:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 4470..4532 952..890 135 68.3 Minus

BS10509.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:00 Download gff for BS10509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PB 207..1158 17..967 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:35 Download gff for BS10509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PB 207..1158 17..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:49 Download gff for BS10509.3prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 719..1673 11..967 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:13 Download gff for BS10509.3prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 719..1673 11..967 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:13 Download gff for BS10509.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23946601..23946750 11..163 98   Minus
2R 23944671..23944740 899..967 95 -> Minus
2R 23944807..23944903 802..898 100 -> Minus
2R 23944960..23945080 681..801 100 -> Minus
2R 23945696..23945824 552..680 100 -> Minus
2R 23945898..23946077 372..551 100 -> Minus
2R 23946137..23946261 247..371 100 -> Minus
2R 23946438..23946520 164..246 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:49 Download gff for BS10509.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19832194..19832263 899..967 95 -> Minus
arm_2R 19832330..19832426 802..898 100 -> Minus
arm_2R 19832483..19832603 681..801 100 -> Minus
arm_2R 19833219..19833347 552..680 100 -> Minus
arm_2R 19833421..19833600 372..551 100 -> Minus
arm_2R 19833660..19833784 247..371 100 -> Minus
arm_2R 19833961..19834043 164..246 100 -> Minus
arm_2R 19834124..19834273 11..163 98   Minus

BS10509.5prime Sequence

851 bp (743 high quality bases) assembled on 2006-04-19

> BS10509.5prime
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGANATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
T

BS10509.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2835-PC 1149 G-salpha60A-RC 1..835 17..851 4156 99.8 Plus
CG2835-PB 1158 G-salpha60A-RB 1..835 17..851 4156 99.8 Plus
CG2835-PA 1149 G-salpha60A-RA 1..835 17..851 4156 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RE 1826 CG2835-RE 489..1323 17..851 4164 99.9 Plus
Galphas-RD 1646 CG2835-RD 300..1134 17..851 4164 99.9 Plus
Galphas-RA 1850 CG2835-RA 513..1347 17..851 4164 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23944465..23944740 17..292 1380 100 Plus
2R 25286936 2R 23945898..23946077 640..819 889 99.4 Plus
2R 25286936 2R 23945696..23945824 511..639 645 100 Plus
2R 25286936 2R 23944960..23945080 390..510 605 100 Plus
2R 25286936 2R 23944806..23944905 292..391 500 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:20:36 has no hits.

BS10509.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:01 Download gff for BS10509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PB 1..835 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:36 Download gff for BS10509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2835-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:11 Download gff for BS10509.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RA 511..1347 13..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:48:01 Download gff for BS10509.5prime
Subject Subject Range Query Range Percent Splice Strand
Galphas-RA 511..1347 13..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:48:01 Download gff for BS10509.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23944463..23944740 13..292 99 -> Plus
2R 23944807..23944903 293..389 100 -> Plus
2R 23944960..23945080 390..510 100 -> Plus
2R 23945696..23945824 511..639 100 -> Plus
2R 23945898..23946077 640..819 99 -> Plus
2R 23946137..23946168 820..851 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:11 Download gff for BS10509.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19831986..19832263 13..292 99 -> Plus
arm_2R 19832330..19832426 293..389 100 -> Plus
arm_2R 19832483..19832603 390..510 100 -> Plus
arm_2R 19833219..19833347 511..639 100 -> Plus
arm_2R 19833421..19833600 640..819 99 -> Plus
arm_2R 19833660..19833691 820..851 100   Plus

BS10509.complete Sequence

1190 bp (1190 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636687

> BS10509.complete
GAAGTTATCAGTCGACATGGGTTGCTTTGGGTCGCCCACCTCCAAGCAGT
CGGACGTGAACTCGGAGGACTCGAAGAGCCAGAAGCGCCGGAGCGATGCA
ATATCTAGACAGTTGCAGAAGGACAAACAGCTCTACAGGGCCACACACAG
GCTGCTCCTCCTGGGGGCGGGCGAGTCCGGCAAATCAACCATAGTCAAGC
AAATGCGAATATTGCATGTCGACGGATTTTCTGACTCGGAAAAGAAACAG
AAAATTGATGATATTAAAAAGAATATTCGAGACGCTATCTTGACTATTAC
AGGAGCCATGAGCACACTTAATCCACCTGTAGCTTTAGAAAAGAAGGAAA
ATGAACCCAGAGTGGAGTACATTCAGGATTATGCATCTAGTCCGGACTTT
AATTATCCTCCTGAATTTTATGAACATACAGAAGAACTATGGAAAGACAA
GGGCGTTCTTCAAACCTATGAGAGGTCGAATGAGTATCAATTAATCGATT
GTGCGAAATACTTCCTGGACCGAGTGAGCACAATCAAGAATCCAAACTAC
ACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGTTTTGACTTCTGGAAT
ATTTGAAACAAGATTTCAAGTGGACAAAGTAAACTTTCACATGTTCGATG
TCGGTGGCCAGCGGGACGAGCGTAGGAAATGGATTCAGTGTTTCAATGAT
GTAACTGCTATCATATTCGTAACTGCGTGCTCAAGTTATAACATGGTTTT
GCGGGAAGATCCCACCCAGAACCGACTTCGAGAATCTTTGGATTTGTTCA
AGAGTATTTGGAACAACAGATGGCTTCGCACGATTTCTATTATACTATTT
TTAAATAAGCAAGATTTGTTAGCAGAGAAAATTAAGGCTGGAAAAAGTAA
ATTGTCGGAATATTTCTCCGAGTTTAACAAATACCAAACGCCAATCGACA
CAGGTGACGCAATAATGGAATCCAATGATGACCCAGAAGTAATACGAGCA
AAATATTTCATACGAGACGAGTTTCTGCGTATATCTACCGCTAGCGGAGA
CGGAAAACACTACTGCTATCCACATTTCACATGCGCCGTTGACACAGAAA
ACATTAAACGTGTGTTTAATGATTGCAGAGACATTATTCAAAGGATGCAC
CTTCGTCAATATGAATTGTTATAGAAGCTTTCTAGACCAT

BS10509.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1158 CG2835-PD 1..1158 17..1174 5790 100 Plus
Galphas-RB 1158 CG2835-PB 1..1158 17..1174 5790 100 Plus
Galphas-RE 1149 CG2835-PE 1..1149 17..1174 5620 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-RD 1646 CG2835-RD 300..1457 17..1174 5790 100 Plus
Galphas-RB 1859 CG2835-RB 513..1670 17..1174 5790 100 Plus
Galphas-RE 1826 CG2835-RE 489..1637 17..1174 5620 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23944465..23944740 17..292 1380 100 Plus
2R 25286936 2R 23945898..23946077 640..819 900 100 Plus
2R 25286936 2R 23946600..23946747 1027..1174 740 100 Plus
2R 25286936 2R 23945696..23945824 511..639 645 100 Plus
2R 25286936 2R 23946134..23946261 817..944 640 100 Plus
2R 25286936 2R 23944960..23945080 390..510 605 100 Plus
2R 25286936 2R 23944806..23944905 292..391 500 100 Plus
2R 25286936 2R 23946438..23946520 945..1027 415 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:00:54 has no hits.

BS10509.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:54 Download gff for BS10509.complete
Subject Subject Range Query Range Percent Splice Strand
G-salpha60A-RB 1..1158 17..1174 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:18 Download gff for BS10509.complete
Subject Subject Range Query Range Percent Splice Strand
G-salpha60A-RB 508..1670 13..1180 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:30 Download gff for BS10509.complete
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 513..1670 17..1174 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:54 Download gff for BS10509.complete
Subject Subject Range Query Range Percent Splice Strand
G-salpha60A-RB 508..1670 13..1180 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:24 Download gff for BS10509.complete
Subject Subject Range Query Range Percent Splice Strand
Galphas-RB 513..1670 17..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:24 Download gff for BS10509.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23944465..23944740 17..292 100 -> Plus
2R 23944807..23944903 293..389 100 -> Plus
2R 23944960..23945080 390..510 100 -> Plus
2R 23945696..23945824 511..639 100 -> Plus
2R 23945898..23946077 640..819 100 -> Plus
2R 23946137..23946261 820..944 100 -> Plus
2R 23946438..23946520 945..1027 100 -> Plus
2R 23946601..23946747 1028..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:30 Download gff for BS10509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19834124..19834270 1028..1174 100   Plus
arm_2R 19831988..19832263 17..292 100 -> Plus
arm_2R 19832330..19832426 293..389 100 -> Plus
arm_2R 19832483..19832603 390..510 100 -> Plus
arm_2R 19833219..19833347 511..639 100 -> Plus
arm_2R 19833421..19833600 640..819 100 -> Plus
arm_2R 19833660..19833784 820..944 100 -> Plus
arm_2R 19833961..19834043 945..1027 100 -> Plus

BS10509.pep Sequence

Translation from 16 to 1173

> BS10509.pep
MGCFGSPTSKQSDVNSEDSKSQKRRSDAISRQLQKDKQLYRATHRLLLLG
AGESGKSTIVKQMRILHVDGFSDSEKKQKIDDIKKNIRDAILTITGAMST
LNPPVALEKKENEPRVEYIQDYASSPDFNYPPEFYEHTEELWKDKGVLQT
YERSNEYQLIDCAKYFLDRVSTIKNPNYTPNEQDILRCRVLTSGIFETRF
QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT
QNRLRESLDLFKSIWNNRWLRTISIILFLNKQDLLAEKIKAGKSKLSEYF
SEFNKYQTPIDTGDAIMESNDDPEVIRAKYFIRDEFLRISTASGDGKHYC
YPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL*

BS10509.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Galphas-PD 385 CG2835-PD 1..385 1..385 2024 100 Plus
Galphas-PB 385 CG2835-PB 1..385 1..385 2024 100 Plus
Galphas-PE 382 CG2835-PE 1..382 1..385 1989 99 Plus
Galphas-PA 382 CG2835-PA 1..382 1..385 1989 99 Plus
Galphas-PC 382 CG2835-PC 1..382 1..385 1989 99 Plus