Clone BS10510 Report

Search the DGRC for BS10510

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:105
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS10510.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS10510.5prime Sequence

333 bp (332 high quality bases) assembled on 2006-04-19

> BS10510.5prime
GAAGTTATCAGTCGACATGGCCAAGGATTGCAATTGGAAAGTGGCACCAA
ATTGGGGGAAATGCATGTGGCAACCAGCCGGAGTTCCCGATTCTACAACT
GGGATTTCAGGTTGGTACGATGGCAGGATGGCAGGATGGCAGGATTGCAC
GATGGCAAGATGGCAGGATAGCAGGAGCACCGCGACGCATTTATTAGCAT
TTTTATGTGTACACTTTTTCGAGCACTTTTTGAACATTTCTGATTCGGCG
AGGCGAGGGTTTTTAATTAAGTTTGAGAATAGAGAGGTGAGTGGGATGAG
TTTGAAACTCTCCAGTTGAAAGCTTTCTAGACC

BS10510.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32827-PA 303 CG32827-RA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 11:29:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19413051..19413354 16..319 1520 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:29:02 has no hits.

BS10510.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:02 Download gff for BS10510.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 17..319 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:39 Download gff for BS10510.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 17..319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:01 Download gff for BS10510.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 16..325 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:01 Download gff for BS10510.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 16..325 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:23 Download gff for BS10510.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 16..325 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:15:23 Download gff for BS10510.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 16..325 99   Plus

BS10510.3prime Sequence

333 bp (332 high quality bases) assembled on 2006-04-19

> BS10510.3prime
ATGGTCTAGAAAGCTTTCAACTGGAGAGTTTCAAACTCATCCCACTCACC
TCTCTATTCTCAAACTTAATTAAAAACCCTCGCCTCGCCGAATCAGAAAT
GTTCAAAAAGTGCTCGAAAAAGTGTACACATAAAAATGCTAATAAATGCG
TCGCGGTGCTCCTGCTATCCTGCCATCTTGCCATCGTGCAATCCTGCCAT
CCTGCCATCCTGCCATCGTACCAACCTGAAATCCCAGTTGTAGAATCGGG
AACTCCGGCTGGTTGCCACATGCATTTCCCCCAATTTGGTGCCACTTTCC
AATTGCAATCCTTGGCCATGTCGACTGATAACT

BS10510.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32827-PA 303 CG32827-RA 1..303 319..17 1515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 15:42:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19413051..19413354 320..17 1520 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:42:34 has no hits.

BS10510.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:02 Download gff for BS10510.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 17..319 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:38 Download gff for BS10510.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32827-PA 1..303 17..319 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:06:05 Download gff for BS10510.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 11..320 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:06:05 Download gff for BS10510.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19413051..19413358 11..320 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:20 Download gff for BS10510.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 11..320 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:20 Download gff for BS10510.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307084..19307391 11..320 99   Minus

BS10510.complete Sequence

335 bp (335 high quality bases) assembled on 2006-03-25

> BS10510.complete
GAAGTTATCAGTCGACATGGCCAAGGATTGCAATTGGAAAGTGGCACCAA
ATTGGGGGAAATGCATGTGGCAACCAGCCGGAGTTCCCGATTCTACAACT
GGGATTTCAGGTTGGTACGATGGCAGGATGGCAGGATGGCAGGATTGCAC
GATGGCAAGATGGCAGGATAGCAGGAGCACCGCGACGCATTTATTAGCAT
TTTTATGTGTACACTTTTTCGAGCACTTTTTGAACATTTCTGATTCGGCG
AGGCGAGGGTTTTTAATTAAGTTTGAGAATAGAGAGGTGAGTGGGATGAG
TTTGAAACTCTCCAGTTGAAAGCTTTCTAGACCAT

BS10510.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 15:32:18 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 15:32:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19413051..19413354 16..319 1520 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:32:17 has no hits.

BS10510.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 13:44:27 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 13:44:27 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:17 Download gff for BS10510.complete
Subject Subject Range Query Range Percent Splice Strand
X 19413052..19413353 17..318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:17 Download gff for BS10510.complete
Subject Subject Range Query Range Percent Splice Strand
X 19413052..19413353 17..318 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:35 Download gff for BS10510.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307085..19307386 17..318 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:35 Download gff for BS10510.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19307085..19307386 17..318 100   Plus

BS10510.pep Sequence

Translation from 16 to 318

> BS10510.pep
MAKDCNWKVAPNWGKCMWQPAGVPDSTTGISGWYDGRMAGWQDCTMARWQ
DSRSTATHLLAFLCVHFFEHFLNISDSARRGFLIKFENREVSGMSLKLSS
*
Sequence BS10510.pep has no blast hits.