Clone BS10511 Report

Search the DGRC for BS10511

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:105
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1646-RA
Protein status:BS10511.pep: full length peptide match
Sequenced Size:3062

Clone Sequence Records

BS10511.3prime Sequence

934 bp (812 high quality bases) assembled on 2006-04-19

> BS10511.3prime
ATGGTCTAGAAAGCTTTTAATAGTAGTTGCCATAACCGCTCCACTGGCCG
TAGTTGTAGCCGCTACCACCACTGTTGGCGCTGGCCCCACCGGAACCGTA
GCCCCACTGATTGTAGTAAGAGTCGTAGGACGCCTGTTGTGGCGTCTGTG
AGGGATAGGCTGCTGCGGTATTCTGCTGACCATAGTATGGATTTGCTGCT
CCATAGTTGTAGCCTGCGACTGCTGCGGCCGAGCCACCATTGTTGTAAGC
TGCCGCCGCGGATCCTGTGGGGACAGGACCTTCTTTGCTGCTTGATGAGT
TTTTGCGACTAGGACTGCCATCACTTTTCTTTTGCGCTTCCTTGGCTTTA
GTGAGTGCCTGCTGCAGAGCGCGCTGTGCGTCTTGTAGACCCCTGGCCGT
GCTGCCGAAATCCTCAAGGAACTCCACTTTGCGCTGGGCAAACAAAACCT
TCTGATCGGGTTCGATGTCCGCACGAGCCATGAACTTATCCATAATTTCG
ACTACCTCCTGCTCATCGACTTTTGGGCGCTGTAGGCACAAATCGATCAT
TTGCAGGGCCACACGAGTGTTGGCTGGATCACGTTCCAGCGCCTGCTGCA
GGGCGGCCAAGCCGGCGTCGAGATCATGACAGATTTTATTGAGGAAACGG
GCATACTTGATGGCCAGACTGCCGGCAATGCCCTTGTTCTTTGTACTCTC
TATATAGTGCTTGTACAGCTCGCGACACTTGTCCAGTGCTCCTCGACGCC
TTTCCACGTTGATACGACGATAGGAAAGCTGCAGGAGATTGGGGCAGCGC
TGATCGATACGCTGCAAAATTTCAGCGGCGTCGTCAAAAGTCATCTGGCA
TTCCTCGAAGGCGGCCCACATCANGTGCAGACTCGGTTTGTCCGGATGAT
GGATGCGACAGGCGCGGCGGTAAACATCACGTAC

BS10511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-PB 3201 CG1646-RB 2284..3201 934..17 4521 99.6 Minus
CG1646-PA 3030 CG1646-RA 2113..3030 934..17 4521 99.6 Minus
CG1646-PD 3081 CG1646-RD 2164..3081 934..17 4521 99.6 Minus
CG1646-PC 3030 CG1646-RC 2113..3030 934..17 4521 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RE 3582 CG1646-RE 2474..3391 934..17 4549 99.7 Minus
CG1646-RC 3573 CG1646-RC 2465..3382 934..17 4549 99.7 Minus
CG1646-RA 3563 CG1646-RA 2455..3372 934..17 4549 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28816188..28816798 934..324 3014 99.5 Minus
3R 32079331 3R 28816855..28817163 325..17 1545 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:15:26 has no hits.

BS10511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:04 Download gff for BS10511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PD 2164..3081 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:41 Download gff for BS10511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PC 2113..3030 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:53 Download gff for BS10511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 2455..3375 11..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:26 Download gff for BS10511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 2455..3375 11..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:26 Download gff for BS10511.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28816188..28816798 324..934 99 -> Minus
3R 28816857..28817166 11..323 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:53 Download gff for BS10511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24641910..24642520 324..934 99 -> Minus
arm_3R 24642579..24642888 11..323 99   Minus

BS10511.5prime Sequence

841 bp (701 high quality bases) assembled on 2006-04-19

> BS10511.5prime
GAAGTTATCAGTCGACATGGTTCAGGAAGAGGAGGAGCCCTTTAGAGGGA
CAAACACTGCGGAGGCACCTGCTTTGGAGCCCCAATTCGAGGAGACTCAG
CACCAGATAGAGGATGACGTGGAAATGCTGCCAGCCGAAGCTGCTGGGGT
TGATGAAAAGAGCTCTTCCTTCCCGTTTGGCACGGTGGCGGAGCTGCATT
CAGAGACTAGTGATGATATTAAAGAGACACGCGGTCAGGCTGGCGTGGAC
ACCCTACTGGCTTCTTTAGCCGGCGATAATGCCAACAGCCTGCCCTCCGT
GGGTGGAAATGACGAGAGTGACAATGTCAAGAAGGCGGACTTTGAGTACA
ATGTAGACTCCCTGCAGCCGCAGATGGAGAAAATGAATTCCTCTGAGGAC
TCCAGCTCACAACATGCCATTGCCGAGGATCTGGCCGATGCGGACACCAG
CAATGCAACCATTGTCAACACAGAGATAGTCTCCGAGGATGAGCTACCTC
TGCCCAGCAAGCCTGAAATAAATGATGCCGAGGAAGTTTCCGATGAAGAG
CTTCCAGCACCGCAGCGGGCTGAATTGCCAGAGGATGCTGAAGTAATCTC
GGAGGATGAACTGCCCGCCAGTAATAACAATAACACCGCCACTGAGCCCA
AGGCACCTTTGAAGCGCAAGGCGGAAAACGAAAGCGTTAAGAGCACCGAA
GATAAGGATGCAAGCAGTCATGAATCAAGCACAAAGGATAAATCCTCCGA
GCAATATAATCCGGGCAGTCCCACATCTGAGAGCAACGACGCACAGCCCT
CAGAGAAAAAACTCAAGGTCGAAGAATCGGAGCCCAAGGAG

BS10511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-PB 3201 CG1646-RB 171..996 16..841 4130 100 Plus
CG1646-PA 3030 CG1646-RA 1..825 17..841 4125 100 Plus
CG1646-PC 3030 CG1646-RC 1..825 17..841 4125 100 Plus
CG1646-PD 3081 CG1646-RD 274..876 239..841 3015 100 Plus
CG1646-PD 3081 CG1646-RD 171..274 16..119 520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RH 4604 CG1646-RH 184..1009 16..841 4130 100 Plus
CG1646-RE 3582 CG1646-RE 361..1186 16..841 4130 100 Plus
CG1646-RC 3573 CG1646-RC 352..1177 16..841 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28812743..28813551 16..824 4045 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:32:51 has no hits.

BS10511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:05 Download gff for BS10511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PB 165..996 10..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:42 Download gff for BS10511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-PB 165..996 10..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:36:00 Download gff for BS10511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RC 346..1177 10..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:08:06 Download gff for BS10511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1646-RC 346..1177 10..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:08:06 Download gff for BS10511.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28812739..28813551 11..824 99 -> Plus
3R 28813618..28813634 825..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:36:00 Download gff for BS10511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24638461..24639273 11..824 99 -> Plus
arm_3R 24639340..24639356 825..841 100   Plus

BS10511.complete Sequence

3062 bp assembled on 2010-05-10

GenBank Submission: KX804478

> BS10511.complete
GAAGTTATCAGTCGACATGGTTCAGGAAGAGGAGGAGCCCTTTAGAGGGA
CAAACACTGCGGAGGCACCTGCTTTGGAGCCCCAATTCGAGGAGACTCAG
CACCAGATAGAGGATGACGTGGAAATGCTGCCAGCCGAAGCTGCTGGGGT
TGATGAAAAGAGCTCTTCCTTCCCGTTTGGCACGGTGGCGGAGCTGCATT
CAGAGACTAGTGATGATATTAAAGAGACACGCGGTCAGGCTGGCGTGGAC
ACCCTACTGGCTTCTTTAGCCGGCGATAATGCCAACAGCCTGCCCTCCGT
GGGTGGAAATGACGAGAGTGACAATGTCAAGAAGGCGGACTTTGAGTACA
ATGTAGACTCCCTGCAGCCGCAGATGGAGAAAATGAATTCCTCTGAGGAC
TCCAGCTCACAACATGCCATTGCCGAGGATCTGGCCGATGCGGACACCAG
CAATGCAACCATTGTCAACACAGAGATAGTCTCCGAGGATGAGCTACCTC
TGCCCAGCAAGCCTGAAATAAATGATGCCGAGGAAGTTTCCGATGAAGAG
CTTCCAGCACCGCAGCGGGCTGAATTGCCAGAGGATGCTGAAGTAATCTC
GGAGGATGAACTGCCCGCCAGTAATAACAATAACACCGCCACTGAGCCCA
AGGCACCTTTGAAGCGCAAGGCGGAAAACGAAAGCGTTAAGAGCACCGAA
GATAAGGATGCAAGCAGTCATGAATCAAGCACAAAGGATAAATCCTCCGA
GCAATATAATCCGGGCAGTCCCACATCTGAGAGCAACGACGCACAGCCCT
CAGAGAAAAAACTCAAGGTCGAAGAATCGGAGCCCAAGGAGAAAAAGAAG
GAAAAGGAGCGCGATAAAGATAAGGAGAAGGATAAGGACAAAGATAATAA
TAAGGATAAGGAAAAGGAGCGAAAGAAGCTGCCGGACCTAGATAAGTACT
GGAGAGCTGTCAAAGAAGACTCCACCGACTTCACCGGCTGGACGTACTTG
CTGCAATATGTTGACAATGAGTCTGATGCGGAGGCGGCGCGCGAGGCCTA
CGACACATTCCTGTCCCACTATCCTTACTGCTACGGATATTGGCGCAAGT
ATGCCGACTACGAGAAGCGCAAGGGCATCAAGGCAAACTGCTATAAGGTG
TTTGAGCGCGGACTGGAGGCGATTCCGCTGTCCGTGGATCTGTGGATCCA
CTACCTAATGCACGTTAAGTCCAATCACGGAGATGATGAAACATTCGTCC
GCTCCCAGTATGAAAGGGCAGTGAAGGCGTGCGGCCTGGAATTTCGATCG
GACAAACTCTGGGATGCCTACATTCGTTGGGAGAACGAGTCAAAGCGGTA
CCACCGTGTGGTCCAGATCTACGATAGACTTCTGGCCATACCGACACAGG
GCTATAATGGTCACTTCGACAATTTCCAAGATTTGATCAATCAGCATGAT
GTAACTATCACACTTGCAAACGAGGAGGTGATCCGTCTGCGCAAAGACTT
CCACGAACGTCAGCAGAGCAAGTCCTCCAAGTCCTCGTCGAAGCATCGCC
GGGACAGCAGCAGCAGCTCCAAGGACAAAGACTCAAAGGAGCGAGAACGT
GAGAAGGACAAGGATAAGGACAAAGACAAGGACAAGGAGAAGCGAGAAAC
TGTCGGGGGCGGTGTTGGTAAGTCGCCAAAAGATACAAGTGAAACTCAAG
TCGATGAATCAGATAGTACTACCGATCTGACCACCGAAAGCGAGTCATCG
CATGCAGCTTCAAAGCCGGCAATGCAGATCGATTTCAGTGATCTTAGCAC
TCTGAATGACGAAGAGGTGGTCAGCATTAGGGACAGGGCTATCTCGGCGC
GGCGCAAAGTCCACAAGTTGACCGTTAGCGCAGTGACAGCCCGCTGGTCC
TTCGAGGAGGGCATCAAGCGGCCTTATTTCCATGTGAAGCCACTCGAGAG
GGCACAGCTCAAGAATTGGAAGGACTACTTGGATTTCGAGATCGAAAAGG
GTGATCGCGAGCGAGTCCTGGTTTTGTTCGAAAGGTGCCTAATCGCCTGT
GCTTTGTATGACGAGTTCTGGCTGAAGATGCTTCGTTATTTAGAGTCTTT
GGAGGATCAGAGCGGAGTTGTGGATCTGGTACGTGATGTTTACCGCCGCG
CCTGTCGCATCCATCATCCGGACAAACCGAGTCTGCACCTGATGTGGGCC
GCCTTCGAGGAATGCCAGATGAACTTTGACGACGCCGCTGAAATTTTGCA
GCGTATCGATCAGCGCTGCCCCAATCTCCTGCAGCTTTCCTATCGTCGTA
TCAACGTGGAAAGGCGTCGAGGAGCACTGGACAAGTGTCGCGAGCTGTAC
AAGCACTATATAGAGAGTACAAAGAACAAGGGCATTGCCGGCAGTCTGGC
CATCAAGTATGCCCGTTTCCTCAATAAAATCTGTCATGATCTCGACGCCG
GCTTGGCCGCCCTGCAGCAGGCGCTGGAACGTGATCCAGCCAACACTCGT
GTGGCCCTGCAAATGATCGATTTGTGCCTACAGCGCCCAAAAGTCGATGA
GCAGGAGGTAGTCGAAATTATGGATAAGTTCATGGCTCGTGCGGACATCG
AACCCGATCAGAAGGTTTTGTTTGCCCAGCGCAAAGTGGAGTTCCTTGAG
GATTTCGGCAGCACGGCCAGGGGTCTACAAGACGCACAGCGCGCTCTGCA
GCAGGCACTCACTAAAGCCAAGGAAGCGCAAAAGAAAAGTGATGGCAGTC
CTAGTCGCAAAAACTCATCAAGCAGCAAAGAAGGTCCTGTCCCCACAGGA
TCCGCGGCGGCAGCTTACAACAATGGTGGCTCGGCCGCAGCAGTCGCAGG
CTACAACTATGGAGCAGCAAATCCATACTATGGTCAGCAGAATACCGCAG
CAGCCTATCCCTCACAGACGCCACAACAGGCGTCCTACGACTCTTACTAC
AATCAGTGGGGCTACGGTTCCGGTGGGGCCAGCGCCAACAGTGGTGGTAG
CGGCTACAACTACGGCCAGTGGAGCGGTTATGGCAACTACTATTAAAAGC
TTTCTAGACCAT

BS10511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RB 3201 CG1646-PB 171..3201 16..3046 15155 100 Plus
CG1646-RE 3030 CG1646-PE 1..3030 17..3046 15150 100 Plus
CG1646-RC 3030 CG1646-PC 1..3030 17..3046 15150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-RE 3582 CG1646-RE 361..3391 16..3046 15155 100 Plus
CG1646-RC 3573 CG1646-RC 352..3382 16..3046 15155 100 Plus
CG1646-RA 3563 CG1646-RA 342..3372 16..3046 15155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28815482..28816798 1423..2739 6585 100 Plus
3R 32079331 3R 28812743..28813551 16..824 4045 100 Plus
3R 32079331 3R 28816855..28817163 2738..3046 1545 100 Plus
3R 32079331 3R 28815146..28815422 1146..1422 1385 100 Plus
3R 32079331 3R 28813616..28813814 823..1021 995 100 Plus
3R 32079331 3R 28813879..28814009 1020..1150 655 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:54:48 has no hits.

BS10511.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:21 Download gff for BS10511.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RC 340..3367 17..3044 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:50 Download gff for BS10511.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 343..3370 17..3044 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:20 Download gff for BS10511.complete
Subject Subject Range Query Range Percent Splice Strand
CG1646-RA 343..3370 17..3044 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:20 Download gff for BS10511.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28812744..28813551 17..824 100 -> Plus
3R 28813618..28813814 825..1021 100 -> Plus
3R 28813881..28814006 1022..1147 100 -> Plus
3R 28815148..28815422 1148..1422 100 -> Plus
3R 28815482..28816798 1423..2739 100 -> Plus
3R 28816857..28817161 2740..3044 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:50 Download gff for BS10511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24640870..24641144 1148..1422 100 -> Plus
arm_3R 24638466..24639273 17..824 100 -> Plus
arm_3R 24639340..24639536 825..1021 100 -> Plus
arm_3R 24639603..24639728 1022..1147 100 -> Plus
arm_3R 24641204..24642520 1423..2739 100 -> Plus
arm_3R 24642579..24642883 2740..3044 100   Plus

BS10511.pep Sequence

Translation from 16 to 3045

> BS10511.pep
MVQEEEEPFRGTNTAEAPALEPQFEETQHQIEDDVEMLPAEAAGVDEKSS
SFPFGTVAELHSETSDDIKETRGQAGVDTLLASLAGDNANSLPSVGGNDE
SDNVKKADFEYNVDSLQPQMEKMNSSEDSSSQHAIAEDLADADTSNATIV
NTEIVSEDELPLPSKPEINDAEEVSDEELPAPQRAELPEDAEVISEDELP
ASNNNNTATEPKAPLKRKAENESVKSTEDKDASSHESSTKDKSSEQYNPG
SPTSESNDAQPSEKKLKVEESEPKEKKKEKERDKDKEKDKDKDNNKDKEK
ERKKLPDLDKYWRAVKEDSTDFTGWTYLLQYVDNESDAEAAREAYDTFLS
HYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHV
KSNHGDDETFVRSQYERAVKACGLEFRSDKLWDAYIRWENESKRYHRVVQ
IYDRLLAIPTQGYNGHFDNFQDLINQHDVTITLANEEVIRLRKDFHERQQ
SKSSKSSSKHRRDSSSSSKDKDSKEREREKDKDKDKDKDKEKRETVGGGV
GKSPKDTSETQVDESDSTTDLTTESESSHAASKPAMQIDFSDLSTLNDEE
VVSIRDRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKPLERAQLKN
WKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSG
VVDLVRDVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEILQRIDQR
CPNLLQLSYRRINVERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYAR
FLNKICHDLDAGLAALQQALERDPANTRVALQMIDLCLQRPKVDEQEVVE
IMDKFMARADIEPDQKVLFAQRKVEFLEDFGSTARGLQDAQRALQQALTK
AKEAQKKSDGSPSRKNSSSSKEGPVPTGSAAAAYNNGGSAAAVAGYNYGA
ANPYYGQQNTAAAYPSQTPQQASYDSYYNQWGYGSGGASANSGGSGYNYG
QWSGYGNYY*

BS10511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1646-PE 1009 CG1646-PE 1..1009 1..1009 5263 100 Plus
CG1646-PC 1009 CG1646-PC 1..1009 1..1009 5263 100 Plus
CG1646-PA 1009 CG1646-PA 1..1009 1..1009 5263 100 Plus
CG1646-PB 1066 CG1646-PB 58..1066 1..1009 5263 100 Plus
CG1646-PH 501 CG1646-PH 58..435 1..378 1962 100 Plus