Clone Sequence Records
BS10513.3prime Sequence
869 bp (804 high quality bases) assembled on 2006-04-19
> BS10513.3prime
ATGGTCTAGAAAGCTTTTATCTCGTTTTCAAAAACAAATCAAATGTTTCC
AAATCACTTTTAGCCACATTTCGGACGAAATAAAAGTTATTGCCTTCCAC
TATAGTTTTTGGCGATATATACAGGTCTTTTTGCGGATCATATTGCGCTC
TTCCAAGCAATTTCAGGAACTCATGACGTTCCCGCAGTCTAAATTCGCGT
GAGGCCAAAAGCTCCGGGCACTGGACAATCTGGGCATGTGGAAGGCCCAT
ATCCTGGTGAATGTAACTAAATCGCTCGACAAGATCATCCGGAGGAATCA
TCAAGAGGCGCGGCTTTCGTACCACCAGGTCACTTAGCTCCTTGGCATTG
AATCCCATTTCCTCCTTAAGGGTGAACACAGACTTGCGGAGGTGTTCCAT
ATTGTAGGTAATGGCATTGGGTTCTCTGGTGGCCAACAGTCGCAGATCAT
GACCACTCAATTTGAACTCCTTTTGGAAGTAACCCAATCGACGATCCACT
CGCCTGGTGGAGAACATCAGCCAATAAGGATTCTGGGTGAGAATTCTTTG
CCTGGCTTCGTCCGAGAATCTCTTGCTTTTTAGATAGTTCACTCTGGTCT
GCAGATCGTCCAAGTCCTCCTTGAACAGCAGCGGGTTCTTGGTGAACATC
CTGCCGAAGTCATCGGGTGATACGCCCTGATCCACCAGGAACGTTATGTA
GGGCTTCACATTTTTCTCGAAATCCAGCTTCAGTACAAAGTCTCCCAATC
CCTTTCGCCGTTCAATACTGTGCAGATCCACTCCCAAGCTGAGAAATTGC
TGCAGGGTACTCGAGTTGTTCACATAGGCCGCCAAATTGAAGGAAGGCAC
ATGGGCCTCCCCGATTTCG
BS10513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5047-PA | 1065 | CG5047-RA | 221..1065 | 861..17 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1124 | CG5047-RA | 246..1097 | 869..17 | 4240 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20519954..20520520 | 295..861 | 2835 | 100 | Plus |
| 3L | 28110227 | 3L | 20519617..20519894 | 17..294 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:37:18 has no hits.
BS10513.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:08 Download gff for
BS10513.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 214..1065 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:47 Download gff for
BS10513.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 214..1065 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:06 Download gff for
BS10513.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 246..1097 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:35 Download gff for
BS10513.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 246..1097 | 17..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:35 Download gff for
BS10513.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20519617..20519894 | 17..294 | 100 | <- | Plus |
| 3L | 20519954..20520527 | 295..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:06 Download gff for
BS10513.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20512717..20512994 | 17..294 | 100 | <- | Plus |
| arm_3L | 20513054..20513627 | 295..869 | 99 | | Plus |
BS10513.5prime Sequence
915 bp (826 high quality bases) assembled on 2006-04-19
> BS10513.5prime
GAAGTTATCAGTCGACATGTTTTGTTCAGCTCTACGTAACATTTTGAGGA
ATTCACAAAATGCGGCTAAAAACGCAACAATTACCTCACAAATACGAAAT
CTGCGAGGACAACAAAGTGTCCACCATGAGGTAGAAGTGTTAACATCACC
GGGTATAACCACCAAACAGAATGACAAGAAGACCGAGCCTGCGGAATGTG
AAGGCTCCAAAGAAGTGGCTCTGGACTTCCGAAATCGGGAGGCCCATGTG
CCTTCCTTCAATTTGGCGGCCTATGTGAACAACTCGAGTACCCTGCAGCA
ATTTCTCAGCTTGGGAGTGGATCTGCACAGTATTGAACGGCGAAAGGGAT
TGGGAGACTTTGTACTGAAGCTGGATTTCGAGAAAAATGTGAAGCCCTAC
ATAACGTTCCTGGTGGATCAGGGCGTATCACCCGATGACTTCGGCAGGAT
GTTCACCAAGAACCCGCTGCTGTTCAAGGAGGACTTGGACGATCTGCAGA
CCAGAGTGAACTATCTAAAAAGCAAGAGATTCTCGGACGAAGCCAGGCAA
AGAATTCTCACCCAGAATCCTTATTGGCTGATGTTCTCCACCAGGCGAGT
GGATCGTCGATTGGGTTACTTCCAAAAGGAGTTCAAATTGAGTGGTCATG
ATCTGCGACTGTTGGCCACCAGAGAACCCAATGCCATTACCTACAATATG
GAACACCTCCGCAAGTCTGTGTTCACCCTTAAGGAGGAAATGGGATTCAA
TGCCAAGGAGCTAAGTGACCTGGTGGTACGAAAGCCGCGCCTCTTGATGA
TTCCTCCGGATGATCTTGTCGAGCGATTTAGTTACATTCACCAGGATATG
GGCCTTCCCCATGCCCAGATTGTCCAGTGCCCGGAGCTTTTGGCCTCACG
CGAATTTAGACTGCG
BS10513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5047-PA | 1065 | CG5047-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1124 | CG5047-RA | 32..931 | 16..915 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20519954..20520741 | 803..16 | 3940 | 100 | Minus |
| 3L | 28110227 | 3L | 20519783..20519894 | 915..804 | 545 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:04:30 has no hits.
BS10513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:09 Download gff for
BS10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:03:48 Download gff for
BS10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:06:13 Download gff for
BS10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 32..931 | 16..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:45:56 Download gff for
BS10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 32..931 | 16..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:45:56 Download gff for
BS10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20519783..20519894 | 804..915 | 99 | <- | Minus |
| 3L | 20519954..20520741 | 16..803 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:06:13 Download gff for
BS10513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20512883..20512994 | 804..915 | 99 | <- | Minus |
| arm_3L | 20513054..20513841 | 16..803 | 100 | | Minus |
BS10513.complete Sequence
1097 bp (1097 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636688
> BS10513.complete
GAAGTTATCAGTCGACATGTTTTGTTCAGCTCTACGTAACATTTTGAGGA
ATTCACAAAATGCGGCTAAAAACGCAACAATTACCTCACAAATACGAAAT
CTGCGAGGACAACAAAGTGTCCACCATGAGGTAGAAGTGTTAACATCACC
GGGTATAACCACCAAACAGAATGACAAGAAGACCGAGCCTGCGGAATGTG
AAGGCTCCAAAGAAGTGGCTCTGGACTTCCGAAATCGGGAGGCCCATGTG
CCTTCCTTCAATTTGGCGGCCTATGTGAACAACTCGAGTACCCTGCAGCA
ATTTCTCAGCTTGGGAGTGGATCTGCACAGTATTGAACGGCGAAAGGGAT
TGGGAGACTTTGTACTGAAGCTGGATTTCGAGAAAAATGTGAAGCCCTAC
ATAACGTTCCTGGTGGATCAGGGCGTATCACCCGATGACTTCGGCAGGAT
GTTCACCAAGAACCCGCTGCTGTTCAAGGAGGACTTGGACGATCTGCAGA
CCAGAGTGAACTATCTAAAAAGCAAGAGATTCTCGGACGAAGCCAGGCAA
AGAATTCTCACCCAGAATCCTTATTGGCTGATGTTCTCCACCAGGCGAGT
GGATCGTCGATTGGGTTACTTCCAAAAGGAGTTCAAATTGAGTGGTCATG
ATCTGCGACTGTTGGCCACCAGAGAACCCAATGCCATTACCTACAATATG
GAACACCTCCGCAAGTCTGTGTTCACCCTTAAGGAGGAAATGGGATTCAA
TGCCAAGGAGCTAAGTGACCTGGTGGTACGAAAGCCGCGCCTCTTGATGA
TTCCTCCGGATGATCTTGTCGAGCGATTTAGTTACATTCACCAGGATATG
GGCCTTCCACATGCCCAGATTGTCCAGTGCCCGGAGCTTTTGGCCTCACG
CGAATTTAGACTGCGGGAACGTCATGAGTTCCTGAAATTGCTTGGAAGAG
CGCAATATGATCCGCAAAAAGACCTGTATATATCGCCAAAAACTATAGTG
GAAGGCAATAACTTTTATTTCGTCCGAAATGTGGCTAAAAGTGATTTGGA
AACATTTGATTTGTTTTTGAAAACGAGATAAAAGCTTTCTAGACCAT
BS10513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1065 | CG5047-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-RA | 1124 | CG5047-RA | 32..1097 | 16..1081 | 5330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20519954..20520741 | 803..16 | 3940 | 100 | Minus |
| 3L | 28110227 | 3L | 20519617..20519894 | 1081..804 | 1390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:07:41 has no hits.
BS10513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:56 Download gff for
BS10513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:21 Download gff for
BS10513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 2..1069 | 15..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:12 Download gff for
BS10513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 40..1095 | 24..1079 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:56 Download gff for
BS10513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5047-RA | 2..1069 | 15..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:30 Download gff for
BS10513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf3-RA | 40..1095 | 24..1079 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:30 Download gff for
BS10513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20519619..20519894 | 804..1079 | 100 | <- | Minus |
| 3L | 20519954..20520733 | 24..803 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:12 Download gff for
BS10513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20512719..20512994 | 804..1079 | 100 | <- | Minus |
| arm_3L | 20513054..20513833 | 24..803 | 100 | | Minus |
BS10513.pep Sequence
Translation from 16 to 1080
> BS10513.pep
MFCSALRNILRNSQNAAKNATITSQIRNLRGQQSVHHEVEVLTSPGITTK
QNDKKTEPAECEGSKEVALDFRNREAHVPSFNLAAYVNNSSTLQQFLSLG
VDLHSIERRKGLGDFVLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKNP
LLFKEDLDDLQTRVNYLKSKRFSDEARQRILTQNPYWLMFSTRRVDRRLG
YFQKEFKLSGHDLRLLATREPNAITYNMEHLRKSVFTLKEEMGFNAKELS
DLVVRKPRLLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLR
ERHEFLKLLGRAQYDPQKDLYISPKTIVEGNNFYFVRNVAKSDLETFDLF
LKTR*
BS10513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf3-PA | 354 | CG5047-PA | 1..354 | 1..354 | 1827 | 100 | Plus |
