Clone BS10520 Report

Search the DGRC for BS10520

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:105
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptKlp10A-RB
Protein status:BS10520.pep: full length peptide match
Sequenced Size:2450

Clone Sequence Records

BS10520.3prime Sequence

928 bp (885 high quality bases) assembled on 2006-04-19

> BS10520.3prime
ATGGTCTAGAAAGCTTCTAACGCTTGCCATTCGGCGAATTGAAGCTGCAC
GACAGCATCTCCTCCTTGGCCAACTTGGCGCGATATTCGGCCATCATGTC
GCGGCACTGGATGGCGATGTCCAGCAGCTGCGAGAACATCGACTCGCCCC
GTTTGCAGTACGAGTCCTGGTCGTAGTCCACATAGTTGGTCAGATTGTAC
AGCGCCTTCGACTCGGCGAGGAAGGTCTCCAGTGTGGCATTAACGGTGCG
ATGATACTCCACCACCATCTCCTCCGTCTGCTGCAGGTCGTCGATGGCCT
GGTGCTGCACAATCAGCTCGTCGGACATCTCGTGTTCGCTCAGCGAACTC
AGCATGGCCAGGTCCATGTTGCCGGCGTTTCCGTTCTTGTTGTTGTTATT
ATTATTGTTGTGAATGACCGCCCCCGAGTGATGAGAGGCCGGAGCACGCT
GATTATTCGACTGGCTGGCCGGTGCATGCGAATTGGGATGCAGCTGATGC
GAGTGCGGATGCACCATGTTGAGCTCCTCCTCCTCCTCGTCGTCCGTGAT
CTCGATGGGCTCGGTGTCGCCGCCAGGGCAAACTTCGACGATATCCTTGA
CCACCAGCTCCTTGACACGATCCGCATAGCGCAGCGTGTTGAGCGTGTGC
TCGCAGGAGCTAAGTCCCGGCGAGATCATGGCTATCATGCACGTCTTGCT
CTTCTCGCCAATGAACGAGTCGCGCAGCACCTGGGTGAGTTTGGAGACAC
GGAAGGGCAAGTGGGCCGACTGTTTGCCCAACGCACGAATGCACTCCTTG
AGGGCCAGCAGCGATTTGTTAATCTCGGCACCCTCCATACGCGTCTGCCG
ATCGGCCGAGGAAGTGTCCACGCCCCGCTCATTGCCCCGCAGATCGATGA
ACGAGAACTGCCATGGATCTTCGTCGAG

BS10520.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1453-PA 2418 Klp10A-RA 1526..2418 909..17 4415 99.7 Minus
CG1453-PE 2418 Klp10A-RE 1526..2418 909..17 4415 99.7 Minus
CG1453-PD 2418 Klp10A-RD 1526..2418 909..17 4415 99.7 Minus
CG1453-PB 2418 Klp10A-RB 1526..2418 909..17 4415 99.7 Minus
CG1453-PC 2418 Klp10A-RC 1526..2418 909..17 4415 99.7 Minus
CG12192-PA 2190 Klp59D-RA 1468..1517 835..786 150 92 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Klp10A-RF 4467 CG1453-RF 1937..2849 928..17 4510 99.7 Minus
Klp10A-RC 4543 CG1453-RC 2013..2925 928..17 4510 99.7 Minus
Klp10A-RB 4754 CG1453-RB 2224..3136 928..17 4510 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11132550..11133142 337..928 2885 99.5 Plus
X 23542271 X 11130980..11131300 17..337 1605 100 Plus
2R 25286936 2R 23124349..23124603 609..860 355 76.9 Plus
2R 25286936 2R 23143581..23143802 887..669 355 78.4 Minus
Blast to na_te.dros performed 2015-02-11 11:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2633..2676 411..368 130 77.3 Minus

BS10520.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:23 Download gff for BS10520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1453-PA 1506..2418 17..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:07 Download gff for BS10520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1453-PC 1506..2418 17..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:28:40 Download gff for BS10520.3prime
Subject Subject Range Query Range Percent Splice Strand
Klp10A-RD 1845..2764 9..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:15 Download gff for BS10520.3prime
Subject Subject Range Query Range Percent Splice Strand
Klp10A-RB 2224..3143 9..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:15 Download gff for BS10520.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11130973..11131300 9..337 98 <- Plus
X 11132551..11133142 338..928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:28:40 Download gff for BS10520.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11025006..11025333 9..337 98 <- Plus
arm_X 11026584..11027175 338..928 99   Plus

BS10520.5prime Sequence

895 bp (715 high quality bases) assembled on 2006-04-19

> BS10520.5prime
GAAGTTATCAGTCGACATGGACATGATTACGGTGGGGCAGAGCGTCAAGA
TCAAGCGGACGGATGGCCGCGTCCACATGGCCGTGGTGGCGGTGATCAAC
CAGTCGGGCAAGTGCATCACAGTCGAATGGTACGAGCGCGGCGAAACGAA
GGGCAAGGAGGTAGAACTGGACGCCATACTCACGCTCAATCCGGAGCTAA
TGCAAGATACTGTCGAACAGCACGCCGCCCCGGAGCCCAAGAAACAAGCC
ACCGCGCCGATGAACCTCTCGCGTAATCCCACACAATCGGCTATCGGTGG
CAATCTCACCAGCCGTATGACCATGGCCGGAAACATGCTGAACAAGATCC
AGGAAAGCCAGTCGATTCCCAATCCGATTGTCAGCAGCAATAGCGTGAAT
ACAAACAGCAACTCCAACACTACGGCCGGCGGAGGTGGTGGCACCACAAC
GTCGACGACCACTGGATTACAGCGTCCACGGTACTCGCAAGCTGCTACCG
GCCAGCAGCAGACAAGGATCGCCTCGGCGGTGCCTAATAACACATTGCCC
AATCCCAGCGCGGCAGCCAGTGCTGGTCCGGCGGCACAAGGAGTCGCCAC
TGCGGCCACAACCCAGGGAGCTGGCGGCGCTAGTACCCGGCGATCGCACG
CATTGAAAGAGGTGGAGCGACTGAAGGAGAATCGCGAGAAGCGACGCGCC
CGACAGGCCGAGATGAAGGAGGAGAAGGTGGCGCTGATGAACCAGGATCC
GGGCAATCCAAACTGGGAGACGGCGCANATGATACGCGAATATCAGAGCA
CGCTGGAATTTGTGCCGCTGCTCGATGGCCAGGCCGTCGATGACCATCAG
ATCACAGTGTGCGTGCGCAAGCGTCCATTAGCCGCAAGGAGGTCA

BS10520.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1453-PA 2418 Klp10A-RA 1..860 17..876 4281 99.8 Plus
CG1453-PE 2418 Klp10A-RE 1..860 17..876 4281 99.8 Plus
CG1453-PD 2418 Klp10A-RD 1..860 17..876 4281 99.8 Plus
CG1453-PB 2418 Klp10A-RB 1..860 17..876 4281 99.8 Plus
CG1453-PC 2418 Klp10A-RC 1..860 17..876 4281 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Klp10A-RF 4467 CG1453-RF 431..1311 16..895 4369 99.8 Plus
Klp10A-RC 4543 CG1453-RC 507..1387 16..895 4369 99.8 Plus
Klp10A-RB 4754 CG1453-RB 718..1598 16..895 4369 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11135037..11135917 895..16 4344 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 14:47:45 has no hits.

BS10520.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:24 Download gff for BS10520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1453-PA 1..879 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:10 Download gff for BS10520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1453-PC 1..879 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:59:24 Download gff for BS10520.5prime
Subject Subject Range Query Range Percent Splice Strand
Klp10A-RD 334..1218 10..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:44 Download gff for BS10520.5prime
Subject Subject Range Query Range Percent Splice Strand
Klp10A-RB 713..1597 10..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:44 Download gff for BS10520.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11135038..11135922 10..894 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:59:24 Download gff for BS10520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11029071..11029955 10..894 99   Minus

BS10520.complete Sequence

2450 bp assembled on 2010-05-10

GenBank Submission: KX803242

> BS10520.complete
GAAGTTATCAGTCGACATGGACATGATTACGGTGGGGCAGAGCGTCAAGA
TCAAGCGGACGGATGGCCGCGTCCACATGGCCGTGGTGGCGGTGATCAAC
CAGTCGGGCAAGTGCATCACAGTCGAATGGTACGAGCGCGGCGAAACGAA
GGGCAAGGAGGTAGAACTGGACGCCATACTCACGCTCAATCCGGAGCTAA
TGCAAGATACTGTCGAACAGCACGCCGCCCCGGAGCCCAAGAAACAAGCC
ACCGCGCCGATGAACCTCTCGCGTAATCCCACACAATCGGCTATCGGTGG
CAATCTCACCAGCCGTATGACCATGGCCGGAAACATGCTGAACAAGATCC
AGGAAAGCCAGTCGATTCCCAATCCGATTGTCAGCAGCAATAGCGTGAAT
ACAAACAGCAACTCCAACACTACGGCCGGCGGAGGTGGTGGCACCACAAC
GTCGACGACCACTGGATTACAGCGTCCACGGTACTCGCAAGCTGCTACCG
GCCAGCAGCAGACAAGGATCGCCTCGGCGGTGCCTAATAACACATTGCCC
AATCCCAGCGCGGCAGCCAGTGCTGGTCCGGCGGCACAAGGAGTCGCCAC
TGCGGCCACAACCCAGGGAGCTGGCGGCGCTAGTACCCGGCGATCGCACG
CATTGAAAGAGGTGGAGCGACTGAAGGAGAATCGCGAGAAGCGACGCGCC
CGACAGGCCGAGATGAAGGAGGAGAAGGTGGCGCTGATGAACCAGGATCC
GGGCAATCCAAACTGGGAGACGGCGCAAATGATACGCGAATATCAGAGCA
CGCTGGAATTTGTGCCGCTGCTCGATGGCCAGGCCGTCGATGACCATCAG
ATCACAGTGTGCGTGCGCAAGCGTCCCATTAGCCGCAAGGAGGTCAATCG
CAAGGAGATCGATGTCATTTCGGTGCCGCGCAAGGACATGCTCATCGTGC
ACGAGCCGCGCAGCAAGGTCGACCTCACCAAGTTCCTGGAGAACCACAAG
TTTCGCTTCGACTACGCCTTCAACGACACGTGCGACAATGCCATGGTATA
CAAATACACAGCCAAGCCGTTGGTGAAAACCATTTTCGAGGGCGGAATGG
CGACGTGCTTCGCCTACGGCCAGACGGGATCGGGCAAAACGCACACCATG
GGCGGTGAGTTTAATGGAAAGGTGCAGGACTGCAAGAACGGCATCTACGC
CATGGCGGCCAAGGATGTCTTTGTGACCCTGAATATGCCGCGTTACCGCG
CCATGAATCTAGTCGTCTCGGCCAGTTTCTTTGAGATTTACAGTGGCAAG
GTCTTCGATCTTCTGTCCGACAAGCAGAAACTGCGCGTCCTGGAGGATGG
TAAACAGCAAGTGCAGGTGGTGGGACTCACCGAGAAGGTGGTCGATGGCG
TCGAGGAGGTACTGAAGCTCATCCAGCACGGCAATGCTGCCCGAACATCC
GGCCAGACGTCGGCCAACTCCAATTCGTCGCGTTCGCACGCCGTTTTCCA
GATTGTGCTGCGGCCGCAGGGCTCGACGAAGATCCATGGCAAGTTCTCGT
TCATCGATCTGGCGGGCAATGAGCGGGGCGTGGACACTTCCTCGGCCGAT
CGGCAGACGCGTATGGAGGGTGCCGAGATTAACAAATCGCTGCTGGCCCT
CAAGGAGTGCATTCGTGCGTTGGGCAAACAGTCGGCCCACTTGCCCTTCC
GTGTCTCCAAACTCACCCAGGTGCTGCGCGACTCGTTCATTGGCGAGAAG
AGCAAGACGTGCATGATAGCCATGATCTCGCCGGGACTTAGCTCCTGCGA
GCACACGCTCAACACGCTGCGCTATGCGGATCGTGTCAAGGAGCTGGTGG
TCAAGGATATCGTCGAAGTTTGCCCTGGCGGCGACACCGAGCCCATCGAG
ATCACGGACGACGAGGAGGAGGAGGAGCTCAACATGGTGCATCCGCACTC
GCATCAGCTGCATCCCAATTCGCATGCACCGGCCAGCCAGTCGAATAATC
AGCGTGCTCCGGCCTCTCATCACTCGGGGGCGGTCATTCACAACAATAAT
AATAACAACAACAAGAACGGAAACGCCGGCAACATGGACCTGGCCATGCT
GAGTTCGCTGAGCGAACACGAGATGTCCGACGAGCTGATTGTGCAGCACC
AGGCCATCGACGACCTGCAGCAGACGGAGGAGATGGTGGTGGAGTATCAT
CGCACCGTTAATGCCACACTGGAGACCTTCCTCGCCGAGTCGAAGGCGCT
GTACAATCTGACCAACTATGTGGACTACGACCAGGACTCGTACTGCAAAC
GGGGCGAGTCGATGTTCTCGCAGCTGCTGGACATCGCCATCCAGTGCCGC
GACATGATGGCCGAATATCGCGCCAAGTTGGCCAAGGAGGAGATGCTGTC
GTGCAGCTTCAATTCGCCGAATGGCAAGCGTTAGAAGCTTTCTAGACCAT

BS10520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Klp10A-RF 2418 CG1453-PF 1..2418 17..2434 12090 100 Plus
Klp10A-RC 2418 CG1453-PC 1..2418 17..2434 12090 100 Plus
Klp10A-RB 2418 CG1453-PB 1..2418 17..2434 12090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Klp10A-RF 4467 CG1453-RF 431..2849 16..2434 12095 100 Plus
Klp10A-RC 4543 CG1453-RC 507..2925 16..2434 12095 100 Plus
Klp10A-RB 4754 CG1453-RB 718..3136 16..2434 12095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11134880..11135917 1053..16 5190 100 Minus
X 23542271 X 11132550..11133365 2114..1299 4080 100 Minus
X 23542271 X 11130980..11131300 2434..2114 1605 100 Minus
X 23542271 X 11133438..11133686 1302..1054 1245 100 Minus
2R 25286936 2R 23124349..23124865 1842..1329 430 73.6 Minus
2R 25286936 2R 23143555..23143802 1538..1782 380 77.8 Plus
2R 25286936 2R 23142958..23143220 944..1206 370 76 Plus
2R 25286936 2R 23125036..23125218 1161..979 240 75.4 Minus
Blast to na_te.dros performed 2014-11-27 08:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2633..2676 2040..2083 130 77.3 Plus

BS10520.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:22 Download gff for BS10520.complete
Subject Subject Range Query Range Percent Splice Strand
Klp10A-RD 232..2649 17..2434 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:46 Download gff for BS10520.complete
Subject Subject Range Query Range Percent Splice Strand
Klp10A-RD 340..2757 17..2434 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:23 Download gff for BS10520.complete
Subject Subject Range Query Range Percent Splice Strand
Klp10A-RB 719..3136 17..2434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:23 Download gff for BS10520.complete
Subject Subject Range Query Range Percent Splice Strand
X 11130980..11131300 2114..2434 100 <- Minus
X 11132551..11133363 1301..2113 100 <- Minus
X 11133440..11133686 1054..1300 100 <- Minus
X 11134880..11135916 17..1053 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:46 Download gff for BS10520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11025013..11025333 2114..2434 100 <- Minus
arm_X 11026584..11027396 1301..2113 100 <- Minus
arm_X 11027473..11027719 1054..1300 100 <- Minus
arm_X 11028913..11029949 17..1053 100   Minus

BS10520.pep Sequence

Translation from 16 to 2433

> BS10520.pep
MDMITVGQSVKIKRTDGRVHMAVVAVINQSGKCITVEWYERGETKGKEVE
LDAILTLNPELMQDTVEQHAAPEPKKQATAPMNLSRNPTQSAIGGNLTSR
MTMAGNMLNKIQESQSIPNPIVSSNSVNTNSNSNTTAGGGGGTTTSTTTG
LQRPRYSQAATGQQQTRIASAVPNNTLPNPSAAASAGPAAQGVATAATTQ
GAGGASTRRSHALKEVERLKENREKRRARQAEMKEEKVALMNQDPGNPNW
ETAQMIREYQSTLEFVPLLDGQAVDDHQITVCVRKRPISRKEVNRKEIDV
ISVPRKDMLIVHEPRSKVDLTKFLENHKFRFDYAFNDTCDNAMVYKYTAK
PLVKTIFEGGMATCFAYGQTGSGKTHTMGGEFNGKVQDCKNGIYAMAAKD
VFVTLNMPRYRAMNLVVSASFFEIYSGKVFDLLSDKQKLRVLEDGKQQVQ
VVGLTEKVVDGVEEVLKLIQHGNAARTSGQTSANSNSSRSHAVFQIVLRP
QGSTKIHGKFSFIDLAGNERGVDTSSADRQTRMEGAEINKSLLALKECIR
ALGKQSAHLPFRVSKLTQVLRDSFIGEKSKTCMIAMISPGLSSCEHTLNT
LRYADRVKELVVKDIVEVCPGGDTEPIEITDDEEEEELNMVHPHSHQLHP
NSHAPASQSNNQRAPASHHSGAVIHNNNNNNNKNGNAGNMDLAMLSSLSE
HEMSDELIVQHQAIDDLQQTEEMVVEYHRTVNATLETFLAESKALYNLTN
YVDYDQDSYCKRGESMFSQLLDIAIQCRDMMAEYRAKLAKEEMLSCSFNS
PNGKR*

BS10520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Klp10A-PF 805 CG1453-PF 1..805 1..805 4131 100 Plus
Klp10A-PC 805 CG1453-PC 1..805 1..805 4131 100 Plus
Klp10A-PB 805 CG1453-PB 1..805 1..805 4131 100 Plus
Klp10A-PD 805 CG1453-PD 1..805 1..805 4131 100 Plus
Klp10A-PE 805 CG1453-PE 1..805 1..805 4131 100 Plus