Clone BS10521 Report

Search the DGRC for BS10521

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:105
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG9636-RC
Protein status:BS10521.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10521.3prime Sequence

945 bp (919 high quality bases) assembled on 2006-04-19

> BS10521.3prime
ATGGTCTAGAAAGCTTTTACGGTTGAATCTGCTTCTTGGGTTTTTTTAAC
TCAGCATCTTCGTCACGCTTAATCTCGGTGTACCGCTCGCCCTTAAGCGA
TACGATCTTATTGTCCCGGTAGCGAACCAGCTTGCGAGGCTCCATCTTCG
GTACCACCGGCTTGTACTCGCGCTGGGTGGCATTCTTGTCAACATAGGAG
TACCTAGCGATAATACGATTCTTGAGTTCATTATCGTCGACGATTACATT
CTTCTTCATATAAGTAGTATGCGACTTGTCAGTAATACACTGGTTCGTCT
CTTGACGATGCAAGAGAATCTGGGTGGCGCTATCGATGTCCCCCTTGGAA
ATTGCGATGCAGTGTTTGATCTCGGCTATTGCCGAATCCGGAAACATTTC
CTGGAGCACCTCAGTCTCGTCCAGGAAGTAGTCGCAAGTGGAGCTGGAGC
TGTCGGTGGAACCTCCATCGCTAGTCTCCGAAAGATGTTGGGAACGCTTG
TTGCCGCCACAGCCGCCACTGCTGCTGCTGTTCGATGAGAGCTCGTCTTT
TTCGGAAGTTGACGAGTTGCGAGCACGCAGCTTGGACTCCGGAATAATGC
TGGAGAGGCTCAGGGAGTTTAGCGATAAGTTGACGGCGTCTGGGTTTTCC
TGGGTTTTCTCCATATCGGTAAGCTCATTGGCCAGCTTGTAGATCCAGTC
ACAGATGATGCCCTGGTCAATGGTTGAAAACTCCTCGAAGTAGGCTCCCA
TCATCTCCACAAAGCCCTCAACATCGAAGCATGGATCCTGGGATGCCTCC
TCCAAAATCGAAATAATGTACGAAAGCACGATTTCGTCCACAACACTAAA
GTCGGCACCCGGAATGTGGCCGCTGATAAACTGCACCANGCTACGCTTCA
CCATCTCGTGCTGCTTCTCTAAATGGGTCATGTCGACTGATAACT

BS10521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-PC 915 CG9636-RC 1..915 931..17 4531 99.7 Minus
CG9636-PB 1389 CG9636-RB 1..911 931..21 4511 99.7 Minus
CG9636-PA 1362 CG9636-RA 1..884 904..21 4401 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-RC 2815 CG9636-RC 258..1172 931..17 4549 99.8 Minus
CG9636-RD 2536 CG9636-RD 146..1055 927..17 4504 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8243222..8243535 618..931 1544 99.4 Plus
3R 32079331 3R 8242918..8243164 371..617 1235 100 Plus
3R 32079331 3R 8242390..8242580 17..207 955 100 Plus
3R 32079331 3R 8242677..8242848 201..372 860 100 Plus
Blast to na_te.dros performed 2015-02-10 22:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6888 532..439 110 60.4 Minus

BS10521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:26 Download gff for BS10521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-PC 1..915 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:11 Download gff for BS10521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-PC 1..915 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:00 Download gff for BS10521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 284..1207 12..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:35 Download gff for BS10521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 251..1174 12..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:35 Download gff for BS10521.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8242388..8242576 12..203 98 <- Plus
3R 8242680..8242846 204..370 100 <- Plus
3R 8242918..8243164 371..617 100 <- Plus
3R 8243222..8243542 618..938 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:00 Download gff for BS10521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4068110..4068298 12..203 98 <- Plus
arm_3R 4068402..4068568 204..370 100 <- Plus
arm_3R 4068640..4068886 371..617 100 <- Plus
arm_3R 4068944..4069264 618..938 98   Plus

BS10521.5prime Sequence

863 bp (796 high quality bases) assembled on 2006-04-19

> BS10521.5prime
GAAGTTATCAGTCGACATGACCAATTTAGAGAAGCAGCACGAGATGGTGA
AGCGTAGCCTGGTGCAGTTTATCAGCGGCCACATTCCGGGTGCCGACTTT
AGTGTTGTGGACGAAATCGTGCTTTCGTACATTATTTCGATTTTGGAGGA
GGCATCCCAGGATCCATGCTTCGATGTTGAGGGCTTTGTGGAGATGATGG
GAGCCTACTTCGAGGAGTTTTCAACCATTGACCAGGGCATCATCTGTGAC
TGGATCTACAAGCTGGCCAATGAGCTTACCGATATGGAGAAAACCCAGGA
AAACCCAGACGCCGTCAACTTATCGCTAAACTCCCTGAGCCTCTCCAGCA
TTATTCCGGAGTCCAAGCTGCGTGCTCGCAACTCGTCAACTTCCGAAAAA
GACGAGCTCTCATCGAACAGCAGCAGCAGTGGCGGCTGTGGCGGCAACAA
GCGTTCCCAACATCTTTCGGAGACTAGCGATGGAGGTTCCACCGACAGCT
CCAGCTCCACTTGCGACTACTTCCTGGACGAGACTGAGGTGCTCCAGGAA
ATGTTTCCGGATTCGGCAATAGCCGAGATCAAACACTGCATCGCAATTTC
CAAGGGGGACATCGATAGCGCCACCCAGATTCTCTTGCATCGTCAAGAGA
CGAACCAGTGTATTACTGACAAGTCGCATACTACTTATATGAAGAAGAAT
GTAATCGTCGACGATNATGAACTCAAGAATCGTATTATCGCTAGGTACTC
CTATGTTGACAAGAATGCCACCCAGCGCGAGTACNAGCCGGTGGTACCGA
AGATGGAGCCTCGCAAGCTGGTTCGCTACCGGGACAATAAGATCGTATCG
CTTAAGGGCGAGC

BS10521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-PB 1389 CG9636-RB 1..847 17..863 4197 99.7 Plus
CG9636-PC 915 CG9636-RC 1..847 17..863 4197 99.7 Plus
CG9636-PA 1362 CG9636-RA 1..820 44..863 4062 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-RC 2815 CG9636-RC 258..1104 17..863 4213 99.8 Plus
CG9636-RD 2536 CG9636-RD 154..987 30..863 4148 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8243222..8243535 330..17 1570 100 Minus
3R 32079331 3R 8242918..8243164 577..331 1235 100 Minus
3R 32079331 3R 8242677..8242848 747..576 849 99.4 Minus
3R 32079331 3R 8242458..8242580 863..741 604 99.2 Minus
Blast to na_te.dros performed 2015-02-10 21:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6888 416..509 110 60.4 Plus

BS10521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:27 Download gff for BS10521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-PB 1..847 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:12 Download gff for BS10521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-PC 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:50:57 Download gff for BS10521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 284..1137 10..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:56 Download gff for BS10521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 251..1104 10..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:56 Download gff for BS10521.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8243222..8243542 10..330 98   Minus
3R 8242458..8242576 745..863 99 <- Minus
3R 8242680..8242846 578..744 99 <- Minus
3R 8242918..8243164 331..577 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:50:57 Download gff for BS10521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4068180..4068298 745..863 99 <- Minus
arm_3R 4068402..4068568 578..744 99 <- Minus
arm_3R 4068640..4068886 331..577 100 <- Minus
arm_3R 4068944..4069264 10..330 98   Minus

BS10521.complete Sequence

947 bp (947 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636689

> BS10521.complete
GAAGTTATCAGTCGACATGACCAATTTAGAGAAGCAGCACGAGATGGTGA
AGCGTAGCCTGGTGCAGTTTATCAGCGGCCACATTCCGGGTGCCGACTTT
AGTGTTGTGGACGAAATCGTGCTTTCGTACATTATTTCGATTTTGGAGGA
GGCATCCCAGGATCCATGCTTCGATGTTGAGGGCTTTGTGGAGATGATGG
GAGCCTACTTCGAGGAGTTTTCAACCATTGACCAGGGCATCATCTGTGAC
TGGATCTACAAGCTGGCCAATGAGCTTACCGATATGGAGAAAACCCAGGA
AAACCCAGACGCCGTCAACTTATCGCTAAACTCCCTGAGCCTCTCCAGCA
TTATTCCGGAGTCCAAGCTGCGTGCTCGCAACTCGTCAACTTCCGAAAAA
GACGAGCTCTCATCGAACAGCAGCAGCAGTGGCGGCTGTGGCGGCAACAA
GCGTTCCCAACATCTTTCGGAGACTAGCGATGGAGGTTCCACCGACAGCT
CCAGCTCCACTTGCGACTACTTCCTGGACGAGACTGAGGTGCTCCAGGAA
ATGTTTCCGGATTCGGCAATAGCCGAGATCAAACACTGCATCGCAATTTC
CAAGGGGGACATCGATAGCGCCACCCAGATTCTCTTGCATCGTCAAGAGA
CGAACCAGTGTATTACTGACAAGTCGCATACTACTTATATGAAGAAGAAT
GTAATCGTCGACGATAATGAACTCAAGAATCGTATTATCGCTAGGTACTC
CTATGTTGACAAGAATGCCACCCAGCGCGAGTACAAGCCGGTGGTACCGA
AGATGGAGCCTCGCAAGCTGGTTCGCTACCGGGACAATAAGATCGTATCG
CTTAAGGGCGAGCGGTACACCGAGATTAAGCGTGACGAAGATGCTGAGTT
AAAAAAACCCAAGAAGCAGATTCAACCGTAAAAGCTTTCTAGACCAT

BS10521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-RC 915 CG9636-PC 1..915 17..931 4575 100 Plus
CG9636-RD 888 CG9636-PD 1..888 44..931 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-RC 2815 CG9636-RC 258..1172 17..931 4575 100 Plus
CG9636-RD 2536 CG9636-RD 154..1055 30..931 4510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8243222..8243535 330..17 1570 100 Minus
3R 32079331 3R 8242918..8243164 577..331 1235 100 Minus
3R 32079331 3R 8242390..8242580 931..741 955 100 Minus
3R 32079331 3R 8242677..8242848 747..576 860 100 Minus
Blast to na_te.dros performed 2014-11-27 20:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6888 416..509 110 60.4 Plus

BS10521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:57 Download gff for BS10521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:23 Download gff for BS10521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 223..1146 10..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:50 Download gff for BS10521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 291..1203 17..929 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:58 Download gff for BS10521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 223..1146 10..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:55 Download gff for BS10521.complete
Subject Subject Range Query Range Percent Splice Strand
CG9636-RC 258..1170 17..929 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:55 Download gff for BS10521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8242918..8243164 331..577 100 <- Minus
3R 8242392..8242576 745..929 100 <- Minus
3R 8242680..8242846 578..744 100 <- Minus
3R 8243222..8243535 17..330 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:50 Download gff for BS10521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4068114..4068298 745..929 100 <- Minus
arm_3R 4068402..4068568 578..744 100 <- Minus
arm_3R 4068640..4068886 331..577 100 <- Minus
arm_3R 4068944..4069257 17..330 100   Minus

BS10521.pep Sequence

Translation from 16 to 930

> BS10521.pep
MTNLEKQHEMVKRSLVQFISGHIPGADFSVVDEIVLSYIISILEEASQDP
CFDVEGFVEMMGAYFEEFSTIDQGIICDWIYKLANELTDMEKTQENPDAV
NLSLNSLSLSSIIPESKLRARNSSTSEKDELSSNSSSSGGCGGNKRSQHL
SETSDGGSTDSSSSTCDYFLDETEVLQEMFPDSAIAEIKHCIAISKGDID
SATQILLHRQETNQCITDKSHTTYMKKNVIVDDNELKNRIIARYSYVDKN
ATQREYKPVVPKMEPRKLVRYRDNKIVSLKGERYTEIKRDEDAELKKPKK
QIQP*

BS10521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9636-PC 304 CG9636-PC 1..304 1..304 1555 100 Plus
CG9636-PD 295 CG9636-PD 1..295 10..304 1507 100 Plus