Clone Sequence Records
BS10521.3prime Sequence
945 bp (919 high quality bases) assembled on 2006-04-19
> BS10521.3prime
ATGGTCTAGAAAGCTTTTACGGTTGAATCTGCTTCTTGGGTTTTTTTAAC
TCAGCATCTTCGTCACGCTTAATCTCGGTGTACCGCTCGCCCTTAAGCGA
TACGATCTTATTGTCCCGGTAGCGAACCAGCTTGCGAGGCTCCATCTTCG
GTACCACCGGCTTGTACTCGCGCTGGGTGGCATTCTTGTCAACATAGGAG
TACCTAGCGATAATACGATTCTTGAGTTCATTATCGTCGACGATTACATT
CTTCTTCATATAAGTAGTATGCGACTTGTCAGTAATACACTGGTTCGTCT
CTTGACGATGCAAGAGAATCTGGGTGGCGCTATCGATGTCCCCCTTGGAA
ATTGCGATGCAGTGTTTGATCTCGGCTATTGCCGAATCCGGAAACATTTC
CTGGAGCACCTCAGTCTCGTCCAGGAAGTAGTCGCAAGTGGAGCTGGAGC
TGTCGGTGGAACCTCCATCGCTAGTCTCCGAAAGATGTTGGGAACGCTTG
TTGCCGCCACAGCCGCCACTGCTGCTGCTGTTCGATGAGAGCTCGTCTTT
TTCGGAAGTTGACGAGTTGCGAGCACGCAGCTTGGACTCCGGAATAATGC
TGGAGAGGCTCAGGGAGTTTAGCGATAAGTTGACGGCGTCTGGGTTTTCC
TGGGTTTTCTCCATATCGGTAAGCTCATTGGCCAGCTTGTAGATCCAGTC
ACAGATGATGCCCTGGTCAATGGTTGAAAACTCCTCGAAGTAGGCTCCCA
TCATCTCCACAAAGCCCTCAACATCGAAGCATGGATCCTGGGATGCCTCC
TCCAAAATCGAAATAATGTACGAAAGCACGATTTCGTCCACAACACTAAA
GTCGGCACCCGGAATGTGGCCGCTGATAAACTGCACCANGCTACGCTTCA
CCATCTCGTGCTGCTTCTCTAAATGGGTCATGTCGACTGATAACT
BS10521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9636-PC | 915 | CG9636-RC | 1..915 | 931..17 | 4531 | 99.7 | Minus |
CG9636-PB | 1389 | CG9636-RB | 1..911 | 931..21 | 4511 | 99.7 | Minus |
CG9636-PA | 1362 | CG9636-RA | 1..884 | 904..21 | 4401 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9636-RC | 2815 | CG9636-RC | 258..1172 | 931..17 | 4549 | 99.8 | Minus |
CG9636-RD | 2536 | CG9636-RD | 146..1055 | 927..17 | 4504 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8243222..8243535 | 618..931 | 1544 | 99.4 | Plus |
3R | 32079331 | 3R | 8242918..8243164 | 371..617 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 8242390..8242580 | 17..207 | 955 | 100 | Plus |
3R | 32079331 | 3R | 8242677..8242848 | 201..372 | 860 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6888 | 532..439 | 110 | 60.4 | Minus |
BS10521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:26 Download gff for
BS10521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-PC | 1..915 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:11 Download gff for
BS10521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-PC | 1..915 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:00 Download gff for
BS10521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 284..1207 | 12..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:35 Download gff for
BS10521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 251..1174 | 12..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:35 Download gff for
BS10521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8242388..8242576 | 12..203 | 98 | <- | Plus |
3R | 8242680..8242846 | 204..370 | 100 | <- | Plus |
3R | 8242918..8243164 | 371..617 | 100 | <- | Plus |
3R | 8243222..8243542 | 618..938 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:00 Download gff for
BS10521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4068110..4068298 | 12..203 | 98 | <- | Plus |
arm_3R | 4068402..4068568 | 204..370 | 100 | <- | Plus |
arm_3R | 4068640..4068886 | 371..617 | 100 | <- | Plus |
arm_3R | 4068944..4069264 | 618..938 | 98 | | Plus |
BS10521.5prime Sequence
863 bp (796 high quality bases) assembled on 2006-04-19
> BS10521.5prime
GAAGTTATCAGTCGACATGACCAATTTAGAGAAGCAGCACGAGATGGTGA
AGCGTAGCCTGGTGCAGTTTATCAGCGGCCACATTCCGGGTGCCGACTTT
AGTGTTGTGGACGAAATCGTGCTTTCGTACATTATTTCGATTTTGGAGGA
GGCATCCCAGGATCCATGCTTCGATGTTGAGGGCTTTGTGGAGATGATGG
GAGCCTACTTCGAGGAGTTTTCAACCATTGACCAGGGCATCATCTGTGAC
TGGATCTACAAGCTGGCCAATGAGCTTACCGATATGGAGAAAACCCAGGA
AAACCCAGACGCCGTCAACTTATCGCTAAACTCCCTGAGCCTCTCCAGCA
TTATTCCGGAGTCCAAGCTGCGTGCTCGCAACTCGTCAACTTCCGAAAAA
GACGAGCTCTCATCGAACAGCAGCAGCAGTGGCGGCTGTGGCGGCAACAA
GCGTTCCCAACATCTTTCGGAGACTAGCGATGGAGGTTCCACCGACAGCT
CCAGCTCCACTTGCGACTACTTCCTGGACGAGACTGAGGTGCTCCAGGAA
ATGTTTCCGGATTCGGCAATAGCCGAGATCAAACACTGCATCGCAATTTC
CAAGGGGGACATCGATAGCGCCACCCAGATTCTCTTGCATCGTCAAGAGA
CGAACCAGTGTATTACTGACAAGTCGCATACTACTTATATGAAGAAGAAT
GTAATCGTCGACGATNATGAACTCAAGAATCGTATTATCGCTAGGTACTC
CTATGTTGACAAGAATGCCACCCAGCGCGAGTACNAGCCGGTGGTACCGA
AGATGGAGCCTCGCAAGCTGGTTCGCTACCGGGACAATAAGATCGTATCG
CTTAAGGGCGAGC
BS10521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9636-PB | 1389 | CG9636-RB | 1..847 | 17..863 | 4197 | 99.7 | Plus |
CG9636-PC | 915 | CG9636-RC | 1..847 | 17..863 | 4197 | 99.7 | Plus |
CG9636-PA | 1362 | CG9636-RA | 1..820 | 44..863 | 4062 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9636-RC | 2815 | CG9636-RC | 258..1104 | 17..863 | 4213 | 99.8 | Plus |
CG9636-RD | 2536 | CG9636-RD | 154..987 | 30..863 | 4148 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8243222..8243535 | 330..17 | 1570 | 100 | Minus |
3R | 32079331 | 3R | 8242918..8243164 | 577..331 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 8242677..8242848 | 747..576 | 849 | 99.4 | Minus |
3R | 32079331 | 3R | 8242458..8242580 | 863..741 | 604 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-10 21:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6888 | 416..509 | 110 | 60.4 | Plus |
BS10521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:27 Download gff for
BS10521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-PB | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:12 Download gff for
BS10521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-PC | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:50:57 Download gff for
BS10521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 284..1137 | 10..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:56 Download gff for
BS10521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 251..1104 | 10..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:56 Download gff for
BS10521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8243222..8243542 | 10..330 | 98 | | Minus |
3R | 8242458..8242576 | 745..863 | 99 | <- | Minus |
3R | 8242680..8242846 | 578..744 | 99 | <- | Minus |
3R | 8242918..8243164 | 331..577 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:50:57 Download gff for
BS10521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4068180..4068298 | 745..863 | 99 | <- | Minus |
arm_3R | 4068402..4068568 | 578..744 | 99 | <- | Minus |
arm_3R | 4068640..4068886 | 331..577 | 100 | <- | Minus |
arm_3R | 4068944..4069264 | 10..330 | 98 | | Minus |
BS10521.complete Sequence
947 bp (947 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636689
> BS10521.complete
GAAGTTATCAGTCGACATGACCAATTTAGAGAAGCAGCACGAGATGGTGA
AGCGTAGCCTGGTGCAGTTTATCAGCGGCCACATTCCGGGTGCCGACTTT
AGTGTTGTGGACGAAATCGTGCTTTCGTACATTATTTCGATTTTGGAGGA
GGCATCCCAGGATCCATGCTTCGATGTTGAGGGCTTTGTGGAGATGATGG
GAGCCTACTTCGAGGAGTTTTCAACCATTGACCAGGGCATCATCTGTGAC
TGGATCTACAAGCTGGCCAATGAGCTTACCGATATGGAGAAAACCCAGGA
AAACCCAGACGCCGTCAACTTATCGCTAAACTCCCTGAGCCTCTCCAGCA
TTATTCCGGAGTCCAAGCTGCGTGCTCGCAACTCGTCAACTTCCGAAAAA
GACGAGCTCTCATCGAACAGCAGCAGCAGTGGCGGCTGTGGCGGCAACAA
GCGTTCCCAACATCTTTCGGAGACTAGCGATGGAGGTTCCACCGACAGCT
CCAGCTCCACTTGCGACTACTTCCTGGACGAGACTGAGGTGCTCCAGGAA
ATGTTTCCGGATTCGGCAATAGCCGAGATCAAACACTGCATCGCAATTTC
CAAGGGGGACATCGATAGCGCCACCCAGATTCTCTTGCATCGTCAAGAGA
CGAACCAGTGTATTACTGACAAGTCGCATACTACTTATATGAAGAAGAAT
GTAATCGTCGACGATAATGAACTCAAGAATCGTATTATCGCTAGGTACTC
CTATGTTGACAAGAATGCCACCCAGCGCGAGTACAAGCCGGTGGTACCGA
AGATGGAGCCTCGCAAGCTGGTTCGCTACCGGGACAATAAGATCGTATCG
CTTAAGGGCGAGCGGTACACCGAGATTAAGCGTGACGAAGATGCTGAGTT
AAAAAAACCCAAGAAGCAGATTCAACCGTAAAAGCTTTCTAGACCAT
BS10521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9636-RC | 915 | CG9636-PC | 1..915 | 17..931 | 4575 | 100 | Plus |
CG9636-RD | 888 | CG9636-PD | 1..888 | 44..931 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9636-RC | 2815 | CG9636-RC | 258..1172 | 17..931 | 4575 | 100 | Plus |
CG9636-RD | 2536 | CG9636-RD | 154..1055 | 30..931 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8243222..8243535 | 330..17 | 1570 | 100 | Minus |
3R | 32079331 | 3R | 8242918..8243164 | 577..331 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 8242390..8242580 | 931..741 | 955 | 100 | Minus |
3R | 32079331 | 3R | 8242677..8242848 | 747..576 | 860 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6888 | 416..509 | 110 | 60.4 | Plus |
BS10521.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:57 Download gff for
BS10521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:23 Download gff for
BS10521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 223..1146 | 10..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:50 Download gff for
BS10521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 291..1203 | 17..929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:58 Download gff for
BS10521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 223..1146 | 10..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:55 Download gff for
BS10521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9636-RC | 258..1170 | 17..929 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:55 Download gff for
BS10521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8242918..8243164 | 331..577 | 100 | <- | Minus |
3R | 8242392..8242576 | 745..929 | 100 | <- | Minus |
3R | 8242680..8242846 | 578..744 | 100 | <- | Minus |
3R | 8243222..8243535 | 17..330 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:50 Download gff for
BS10521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4068114..4068298 | 745..929 | 100 | <- | Minus |
arm_3R | 4068402..4068568 | 578..744 | 100 | <- | Minus |
arm_3R | 4068640..4068886 | 331..577 | 100 | <- | Minus |
arm_3R | 4068944..4069257 | 17..330 | 100 | | Minus |
BS10521.pep Sequence
Translation from 16 to 930
> BS10521.pep
MTNLEKQHEMVKRSLVQFISGHIPGADFSVVDEIVLSYIISILEEASQDP
CFDVEGFVEMMGAYFEEFSTIDQGIICDWIYKLANELTDMEKTQENPDAV
NLSLNSLSLSSIIPESKLRARNSSTSEKDELSSNSSSSGGCGGNKRSQHL
SETSDGGSTDSSSSTCDYFLDETEVLQEMFPDSAIAEIKHCIAISKGDID
SATQILLHRQETNQCITDKSHTTYMKKNVIVDDNELKNRIIARYSYVDKN
ATQREYKPVVPKMEPRKLVRYRDNKIVSLKGERYTEIKRDEDAELKKPKK
QIQP*
BS10521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9636-PC | 304 | CG9636-PC | 1..304 | 1..304 | 1555 | 100 | Plus |
CG9636-PD | 295 | CG9636-PD | 1..295 | 10..304 | 1507 | 100 | Plus |