Clone Sequence Records
BS10526.3prime Sequence
933 bp (846 high quality bases) assembled on 2006-04-19
> BS10526.3prime
ATGGTCTAGAAAGCTTCTATTTACACTTGGTGGTCTGATCCAGCAGCTTT
TTCCACAAATCGAATTGTTCGTTCGACTTGATCATGTGCACGCTGATTGC
GTTGCGGATGTTGCACGGGTTAAATGAGATGCGTCGGTTAACGAACTCGT
TCGCCTGCACCCGCTTAACATTAAGGCTCTTGGCTACTATGCCCGTGGTG
AACACGTCCTCCAGCTTCAGATAAACGGTCTTCAGAGATCGCACGTAGAG
TTCGTGCACAATGTCTCCGGTGAGTACGTAGGCGGGTCCAGTGGTGAAGG
ACGGGAATACTCCCGCCGCGAACTGATCGACGGACACATAGTATTTGGAT
TTCTTATTGCGAATCGGTTTCCACTTCTTGGCCAAACGACCGTATATGGT
ACGCTTGTCCTTGTGCTTGTCCAGGAAGGTCAGCAGCTTGGGCACATTGA
TGAACATGTCGTCGTCCGTCTTGAGAATGTACTTTGCCTTCGGGCAATGC
ACATCTGCCCATTCCAGCGTCGATATTGTCTTGAGCGTGAGGTTGTTGTA
CGAGTCTATGAAGTTTCCCCGTATCAGATCTCCATAGATGAAGTTCTCCT
GGGTAAGCGCTTTGTTTATGGTTTCATTGGTGCCACGTCCTAGGACAAAT
GCCATGCCCACGTCCCTTCTCGTCCCGTAATGCATCCAAGTCTGCCGGAT
GGACATGCGGGCTGCATCGTGAGACATCGCTGAGCTAATAAGAACCAGGA
GCTTAATAAACTCTCCGCCTTTCGGACATATGCGCTCCGCATCGATCTCC
TCATCCACGTGGCCTGGCTCGTAGAGTGTCTCGGTGGCCACTCCCTTGGA
GGGATCTACAGGAGCACTTGGCACCTTGCTCTTCGTCGTTTTCACAGGTG
GCACTGGTGGTTTTGCGGATTTTGGCAGAGGGA
BS10526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-PA | 1758 | CG8668-RA | 842..1758 | 933..17 | 4585 | 100 | Minus |
CG8673-PA | 1263 | CG8673-RA | 778..830 | 493..441 | 165 | 92.4 | Minus |
CG8673-PA | 1263 | CG8673-RA | 601..629 | 670..642 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 3215 | CG8668-RB | 1953..2869 | 933..17 | 4585 | 100 | Minus |
CG8668-RA | 2889 | CG8668-RA | 1627..2543 | 933..17 | 4585 | 100 | Minus |
CG8673-RA | 1404 | CG8673-RA | 619..1145 | 715..189 | 615 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8132727..8133643 | 933..17 | 4585 | 100 | Minus |
2L | 23513712 | 2L | 8125014..8125540 | 715..189 | 610 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:38:37 has no hits.
BS10526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:34 Download gff for
BS10526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 843..1758 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:22 Download gff for
BS10526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 843..1758 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:02:08 Download gff for
BS10526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 1628..2550 | 7..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:32 Download gff for
BS10526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 1628..2550 | 7..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:32 Download gff for
BS10526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8132728..8133650 | 7..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:02:08 Download gff for
BS10526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8132728..8133650 | 7..932 | 99 | | Minus |
BS10526.5prime Sequence
836 bp (799 high quality bases) assembled on 2006-04-19
> BS10526.5prime
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACT
CAACGCAGTGGACGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGC
AGGAACCGGAATCCAAGGTGATACAGGAAATTAAGG
BS10526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-PA | 1758 | CG8668-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 3215 | CG8668-RB | 1111..1931 | 16..836 | 4105 | 100 | Plus |
CG8668-RA | 2889 | CG8668-RA | 785..1605 | 16..836 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8131425..8131913 | 16..504 | 2445 | 100 | Plus |
2L | 23513712 | 2L | 8131968..8132199 | 499..730 | 1145 | 99.6 | Plus |
2L | 23513712 | 2L | 8132594..8132705 | 725..836 | 560 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2508 | 456..620 | 145 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2419 | 489..612 | 144 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7070 | 456..683 | 141 | 55 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2486 | 495..622 | 135 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2478 | 494..535 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2826 | 495..535 | 115 | 75.6 | Plus |
BS10526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:35 Download gff for
BS10526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:24 Download gff for
BS10526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:08 Download gff for
BS10526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 777..1605 | 10..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:54 Download gff for
BS10526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 777..1605 | 10..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:54 Download gff for
BS10526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8131417..8131912 | 10..503 | 99 | -> | Plus |
2L | 8131973..8132194 | 504..725 | 100 | -> | Plus |
2L | 8132595..8132705 | 726..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:08 Download gff for
BS10526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8131417..8131912 | 10..503 | 99 | -> | Plus |
arm_2L | 8131973..8132194 | 504..725 | 100 | -> | Plus |
arm_2L | 8132595..8132705 | 726..836 | 100 | | Plus |
BS10526.complete Sequence
1790 bp assembled on 2007-10-25
GenBank Submission: FJ636690
> BS10526.complete
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACT
CAACGCAGTGGACGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGC
AGGAACCGGAATCCAAGGTGATACAGGAAATTAAGGAGGCAAAGAAAGAG
GCGGCAGTCCCTCTGCCAAAATCCGCAAAACCACCAGTGCCACCTGTGAA
AACGACGAAGAGCAAGGTGCCAAGTGCTCCTGTAGATCCCTCCAAGGGAG
TGGCCACCGAGACACTCTACGAGCCAGGCCACGTGGATGAGGAGATCGAT
GCGGAGCGCATATGTCCGAAAGGCGGAGAGTTTATTAAGCTCCTGGTTCT
TATTAGCTCAGCGATGTCTCACGATGCAGCCCGCATGTCCATCCGGCAGA
CTTGGATGCATTACGGGACGAGAAGGGACGTGGGCATGGCATTTGTCCTA
GGACGTGGCACCAATGAAACCATAAACAAAGCGCTTACCCAGGAGAACTT
CATCTATGGAGATCTGATACGGGGAAACTTCATAGACTCGTACAACAACC
TCACGCTCAAGACAATATCGACGCTGGAATGGGCAGATGTGCATTGCCCG
AAGGCAAAGTACATTCTCAAGACGGACGACGACATGTTCATCAATGTGCC
CAAGCTGCTGACCTTCCTGGACAAGCACAAGGACAAGCGTACCATATACG
GTCGTTTGGCCAAGAAGTGGAAACCGATTCGCAATAAGAAATCCAAATAC
TATGTGTCCGTCGATCAGTTCGCGGCGGGAGTATTCCCGTCCTTCACCAC
TGGACCCGCCTACGTACTCACCGGAGACATTGTGCACGAACTCTACGTGC
GATCTCTGAAGACCGTTTATCTGAAGCTGGAGGACGTGTTCACCACGGGC
ATAGTAGCCAAGAGCCTTAATGTTAAGCGGGTGCAGGCGAACGAGTTCGT
TAACCGACGCATCTCATTTAACCCGTGCAACATCCGCAACGCAATCAGCG
TGCACATGATCAAGTCGAACGAACAATTCGATTTGTGGAAAAAGCTGCTG
GATCAGACCACCAAGTGTAAATAGAAGCTTTCTAGACCAT
BS10526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 1758 | CG8668-PB | 1..1758 | 17..1774 | 8775 | 99.9 | Plus |
CG8668-RA | 1758 | CG8668-PA | 1..1758 | 17..1774 | 8775 | 99.9 | Plus |
CG8673-RA | 1263 | CG8673-PA | 556..1082 | 1076..1602 | 610 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-RB | 3215 | CG8668-RB | 1111..2869 | 16..1774 | 8780 | 99.9 | Plus |
CG8668-RA | 2889 | CG8668-RA | 785..2543 | 16..1774 | 8780 | 99.9 | Plus |
CG8673-RA | 1404 | CG8673-RA | 619..1145 | 1076..1602 | 610 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8132594..8133643 | 725..1774 | 5235 | 99.9 | Plus |
2L | 23513712 | 2L | 8131425..8131913 | 16..504 | 2445 | 100 | Plus |
2L | 23513712 | 2L | 8131968..8132199 | 499..730 | 1145 | 99.6 | Plus |
2L | 23513712 | 2L | 8125014..8125540 | 1076..1602 | 610 | 74.4 | Plus |
Blast to na_te.dros performed 2014-11-27 10:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2508 | 456..620 | 145 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2419 | 489..612 | 144 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7070 | 456..683 | 141 | 55 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2486 | 495..622 | 135 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2478 | 494..535 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2826 | 495..535 | 115 | 75.6 | Plus |
BS10526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:55 Download gff for
BS10526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 1..1758 | 17..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:35 Download gff for
BS10526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 754..2527 | 10..1784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:42 Download gff for
BS10526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 786..2537 | 17..1768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:55 Download gff for
BS10526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 763..2514 | 17..1768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:58 Download gff for
BS10526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8668-RA | 786..2537 | 17..1768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:58 Download gff for
BS10526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8131426..8131912 | 17..503 | 100 | -> | Plus |
2L | 8131973..8132194 | 504..725 | 100 | -> | Plus |
2L | 8132595..8133637 | 726..1768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:42 Download gff for
BS10526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8131426..8131912 | 17..503 | 100 | -> | Plus |
arm_2L | 8131973..8132194 | 504..725 | 100 | -> | Plus |
arm_2L | 8132595..8133637 | 726..1768 | 99 | | Plus |
BS10526.pep Sequence
Translation from 16 to 1773
> BS10526.pep
MAAMANLHNTRMLRFFLVLIVVILTIFIYASYSTTSTLTANHVHPAASPP
QQLIGSHPGRQPMDQVPPVNSTDKEYNSPPGESSSKQQSVSSRHSQQLPP
QQAEIHKRHPQHRLPTIDEDALLDGGSAGASPQVGGPDQTPNVMADELLE
EQQYGQSVDGITGNINSSTNNNSSADTLAVKQSIPAQSPQQQLPQSQSQV
QPGLSDADLLIPTSNLQKFIENADRILKNITSNSSTGNPSDMAQLNAVDG
KLEVSGVESEKQEPESKVIQEIKEAKKEAAVPLPKSAKPPVPPVKTTKSK
VPSAPVDPSKGVATETLYEPGHVDEEIDAERICPKGGEFIKLLVLISSAM
SHDAARMSIRQTWMHYGTRRDVGMAFVLGRGTNETINKALTQENFIYGDL
IRGNFIDSYNNLTLKTISTLEWADVHCPKAKYILKTDDDMFINVPKLLTF
LDKHKDKRTIYGRLAKKWKPIRNKKSKYYVSVDQFAAGVFPSFTTGPAYV
LTGDIVHELYVRSLKTVYLKLEDVFTTGIVAKSLNVKRVQANEFVNRRIS
FNPCNIRNAISVHMIKSNEQFDLWKKLLDQTTKCK*
BS10526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8668-PB | 585 | CG8668-PB | 1..585 | 1..585 | 3015 | 100 | Plus |
CG8668-PA | 585 | CG8668-PA | 1..585 | 1..585 | 3015 | 100 | Plus |
CG8673-PA | 420 | CG8673-PA | 140..416 | 308..584 | 1006 | 66.4 | Plus |
CG11357-PD | 434 | CG11357-PD | 134..393 | 340..580 | 289 | 27.3 | Plus |
CG30036-PA | 388 | CG30036-PA | 60..370 | 342..584 | 288 | 26.8 | Plus |