Clone BS10526 Report

Search the DGRC for BS10526

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:105
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG8668-RA
Protein status:BS10526.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10526.3prime Sequence

933 bp (846 high quality bases) assembled on 2006-04-19

> BS10526.3prime
ATGGTCTAGAAAGCTTCTATTTACACTTGGTGGTCTGATCCAGCAGCTTT
TTCCACAAATCGAATTGTTCGTTCGACTTGATCATGTGCACGCTGATTGC
GTTGCGGATGTTGCACGGGTTAAATGAGATGCGTCGGTTAACGAACTCGT
TCGCCTGCACCCGCTTAACATTAAGGCTCTTGGCTACTATGCCCGTGGTG
AACACGTCCTCCAGCTTCAGATAAACGGTCTTCAGAGATCGCACGTAGAG
TTCGTGCACAATGTCTCCGGTGAGTACGTAGGCGGGTCCAGTGGTGAAGG
ACGGGAATACTCCCGCCGCGAACTGATCGACGGACACATAGTATTTGGAT
TTCTTATTGCGAATCGGTTTCCACTTCTTGGCCAAACGACCGTATATGGT
ACGCTTGTCCTTGTGCTTGTCCAGGAAGGTCAGCAGCTTGGGCACATTGA
TGAACATGTCGTCGTCCGTCTTGAGAATGTACTTTGCCTTCGGGCAATGC
ACATCTGCCCATTCCAGCGTCGATATTGTCTTGAGCGTGAGGTTGTTGTA
CGAGTCTATGAAGTTTCCCCGTATCAGATCTCCATAGATGAAGTTCTCCT
GGGTAAGCGCTTTGTTTATGGTTTCATTGGTGCCACGTCCTAGGACAAAT
GCCATGCCCACGTCCCTTCTCGTCCCGTAATGCATCCAAGTCTGCCGGAT
GGACATGCGGGCTGCATCGTGAGACATCGCTGAGCTAATAAGAACCAGGA
GCTTAATAAACTCTCCGCCTTTCGGACATATGCGCTCCGCATCGATCTCC
TCATCCACGTGGCCTGGCTCGTAGAGTGTCTCGGTGGCCACTCCCTTGGA
GGGATCTACAGGAGCACTTGGCACCTTGCTCTTCGTCGTTTTCACAGGTG
GCACTGGTGGTTTTGCGGATTTTGGCAGAGGGA

BS10526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-PA 1758 CG8668-RA 842..1758 933..17 4585 100 Minus
CG8673-PA 1263 CG8673-RA 778..830 493..441 165 92.4 Minus
CG8673-PA 1263 CG8673-RA 601..629 670..642 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 3215 CG8668-RB 1953..2869 933..17 4585 100 Minus
CG8668-RA 2889 CG8668-RA 1627..2543 933..17 4585 100 Minus
CG8673-RA 1404 CG8673-RA 619..1145 715..189 615 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8132727..8133643 933..17 4585 100 Minus
2L 23513712 2L 8125014..8125540 715..189 610 74.4 Minus
Blast to na_te.dros performed on 2015-02-12 10:38:37 has no hits.

BS10526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:34 Download gff for BS10526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 843..1758 17..932 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:22 Download gff for BS10526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 843..1758 17..932 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:02:08 Download gff for BS10526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 1628..2550 7..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:32 Download gff for BS10526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 1628..2550 7..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:32 Download gff for BS10526.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8132728..8133650 7..932 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:02:08 Download gff for BS10526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8132728..8133650 7..932 99   Minus

BS10526.5prime Sequence

836 bp (799 high quality bases) assembled on 2006-04-19

> BS10526.5prime
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACT
CAACGCAGTGGACGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGC
AGGAACCGGAATCCAAGGTGATACAGGAAATTAAGG

BS10526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-PA 1758 CG8668-RA 1..820 17..836 4100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 3215 CG8668-RB 1111..1931 16..836 4105 100 Plus
CG8668-RA 2889 CG8668-RA 785..1605 16..836 4105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8131425..8131913 16..504 2445 100 Plus
2L 23513712 2L 8131968..8132199 499..730 1145 99.6 Plus
2L 23513712 2L 8132594..8132705 725..836 560 100 Plus
Blast to na_te.dros performed 2015-02-12 19:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2508 456..620 145 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2299..2419 489..612 144 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..7070 456..683 141 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2486 495..622 135 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2437..2478 494..535 120 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2826 495..535 115 75.6 Plus

BS10526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:42:35 Download gff for BS10526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:04:24 Download gff for BS10526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:08 Download gff for BS10526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 777..1605 10..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:54 Download gff for BS10526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 777..1605 10..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:54 Download gff for BS10526.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8131417..8131912 10..503 99 -> Plus
2L 8131973..8132194 504..725 100 -> Plus
2L 8132595..8132705 726..836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:08 Download gff for BS10526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8131417..8131912 10..503 99 -> Plus
arm_2L 8131973..8132194 504..725 100 -> Plus
arm_2L 8132595..8132705 726..836 100   Plus

BS10526.complete Sequence

1790 bp assembled on 2007-10-25

GenBank Submission: FJ636690

> BS10526.complete
GAAGTTATCAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCA
TGCTACGCTTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATC
TACGCCTCGTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCC
TGCGGCATCACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGC
CCATGGACCAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCG
CCACCTGGTGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTC
GCAACAATTACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGC
ACCGCCTGCCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCG
GGCGCCAGTCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGC
GGATGAGCTGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCA
CAGGCAACATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTG
GCTGTTAAACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCA
GTCACAGTCGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATAC
CCACTTCCAATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAG
AACATCACTTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACT
CAACGCAGTGGACGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGC
AGGAACCGGAATCCAAGGTGATACAGGAAATTAAGGAGGCAAAGAAAGAG
GCGGCAGTCCCTCTGCCAAAATCCGCAAAACCACCAGTGCCACCTGTGAA
AACGACGAAGAGCAAGGTGCCAAGTGCTCCTGTAGATCCCTCCAAGGGAG
TGGCCACCGAGACACTCTACGAGCCAGGCCACGTGGATGAGGAGATCGAT
GCGGAGCGCATATGTCCGAAAGGCGGAGAGTTTATTAAGCTCCTGGTTCT
TATTAGCTCAGCGATGTCTCACGATGCAGCCCGCATGTCCATCCGGCAGA
CTTGGATGCATTACGGGACGAGAAGGGACGTGGGCATGGCATTTGTCCTA
GGACGTGGCACCAATGAAACCATAAACAAAGCGCTTACCCAGGAGAACTT
CATCTATGGAGATCTGATACGGGGAAACTTCATAGACTCGTACAACAACC
TCACGCTCAAGACAATATCGACGCTGGAATGGGCAGATGTGCATTGCCCG
AAGGCAAAGTACATTCTCAAGACGGACGACGACATGTTCATCAATGTGCC
CAAGCTGCTGACCTTCCTGGACAAGCACAAGGACAAGCGTACCATATACG
GTCGTTTGGCCAAGAAGTGGAAACCGATTCGCAATAAGAAATCCAAATAC
TATGTGTCCGTCGATCAGTTCGCGGCGGGAGTATTCCCGTCCTTCACCAC
TGGACCCGCCTACGTACTCACCGGAGACATTGTGCACGAACTCTACGTGC
GATCTCTGAAGACCGTTTATCTGAAGCTGGAGGACGTGTTCACCACGGGC
ATAGTAGCCAAGAGCCTTAATGTTAAGCGGGTGCAGGCGAACGAGTTCGT
TAACCGACGCATCTCATTTAACCCGTGCAACATCCGCAACGCAATCAGCG
TGCACATGATCAAGTCGAACGAACAATTCGATTTGTGGAAAAAGCTGCTG
GATCAGACCACCAAGTGTAAATAGAAGCTTTCTAGACCAT

BS10526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 1758 CG8668-PB 1..1758 17..1774 8775 99.9 Plus
CG8668-RA 1758 CG8668-PA 1..1758 17..1774 8775 99.9 Plus
CG8673-RA 1263 CG8673-PA 556..1082 1076..1602 610 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-RB 3215 CG8668-RB 1111..2869 16..1774 8780 99.9 Plus
CG8668-RA 2889 CG8668-RA 785..2543 16..1774 8780 99.9 Plus
CG8673-RA 1404 CG8673-RA 619..1145 1076..1602 610 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8132594..8133643 725..1774 5235 99.9 Plus
2L 23513712 2L 8131425..8131913 16..504 2445 100 Plus
2L 23513712 2L 8131968..8132199 499..730 1145 99.6 Plus
2L 23513712 2L 8125014..8125540 1076..1602 610 74.4 Plus
Blast to na_te.dros performed 2014-11-27 10:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2508 456..620 145 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2299..2419 489..612 144 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..7070 456..683 141 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2486 495..622 135 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2437..2478 494..535 120 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2826 495..535 115 75.6 Plus

BS10526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:55 Download gff for BS10526.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 1..1758 17..1774 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:35 Download gff for BS10526.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 754..2527 10..1784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:42 Download gff for BS10526.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 786..2537 17..1768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:55 Download gff for BS10526.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 763..2514 17..1768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:58 Download gff for BS10526.complete
Subject Subject Range Query Range Percent Splice Strand
CG8668-RA 786..2537 17..1768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:58 Download gff for BS10526.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8131426..8131912 17..503 100 -> Plus
2L 8131973..8132194 504..725 100 -> Plus
2L 8132595..8133637 726..1768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:42 Download gff for BS10526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8131426..8131912 17..503 100 -> Plus
arm_2L 8131973..8132194 504..725 100 -> Plus
arm_2L 8132595..8133637 726..1768 99   Plus

BS10526.pep Sequence

Translation from 16 to 1773

> BS10526.pep
MAAMANLHNTRMLRFFLVLIVVILTIFIYASYSTTSTLTANHVHPAASPP
QQLIGSHPGRQPMDQVPPVNSTDKEYNSPPGESSSKQQSVSSRHSQQLPP
QQAEIHKRHPQHRLPTIDEDALLDGGSAGASPQVGGPDQTPNVMADELLE
EQQYGQSVDGITGNINSSTNNNSSADTLAVKQSIPAQSPQQQLPQSQSQV
QPGLSDADLLIPTSNLQKFIENADRILKNITSNSSTGNPSDMAQLNAVDG
KLEVSGVESEKQEPESKVIQEIKEAKKEAAVPLPKSAKPPVPPVKTTKSK
VPSAPVDPSKGVATETLYEPGHVDEEIDAERICPKGGEFIKLLVLISSAM
SHDAARMSIRQTWMHYGTRRDVGMAFVLGRGTNETINKALTQENFIYGDL
IRGNFIDSYNNLTLKTISTLEWADVHCPKAKYILKTDDDMFINVPKLLTF
LDKHKDKRTIYGRLAKKWKPIRNKKSKYYVSVDQFAAGVFPSFTTGPAYV
LTGDIVHELYVRSLKTVYLKLEDVFTTGIVAKSLNVKRVQANEFVNRRIS
FNPCNIRNAISVHMIKSNEQFDLWKKLLDQTTKCK*

BS10526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8668-PB 585 CG8668-PB 1..585 1..585 3015 100 Plus
CG8668-PA 585 CG8668-PA 1..585 1..585 3015 100 Plus
CG8673-PA 420 CG8673-PA 140..416 308..584 1006 66.4 Plus
CG11357-PD 434 CG11357-PD 134..393 340..580 289 27.3 Plus
CG30036-PA 388 CG30036-PA 60..370 342..584 288 26.8 Plus