Clone BS10555 Report

Search the DGRC for BS10555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:105
Well:55
Vector:pDNR-Dual
Associated Gene/Transcriptsimj-RC
Protein status:BS10555.pep: full length peptide match
Sequenced Size:2771

Clone Sequence Records

BS10555.3prime Sequence

886 bp (884 high quality bases) assembled on 2006-04-19

> BS10555.3prime
ATGGTCTAGAAAGCTTTTAGGCCTTCCAGTTGTTCTGCCGACTGCCACTG
GCCCCACTTTGCTGCTGGGGCGGTATCATCTCCAGTAGATATTGGCGCTG
CAGCTCCGCCGCCCGCTGAACTTCCGCCATGCTGTTCGAGCTGCTGGAAT
TCTTCGCCGATCCGGAGGACGAGCTGCTCTTCTTGTTGTTATTGTTGAAG
GCTGCCACTTGTGCCGCCTGCGCCATGGCCATTTGGTAAGAGTACAAAAG
CGGTGCGAACTGCATCATATGCTGCGGATTGCCACCAAGTCCTCTAAAGA
GCTGCTGCTGGAACGCCTGCATGGCTGCCGCCGTAGCAGCTGGCGAGGAA
CCGCTCAGTCCTGCCGCCGGATTAGCCGAACCCGTCGATGCTCCGCCAAA
ATTACCCAATCCTCCCAGCGCAGCCAGATTGCCCAGCTGGCTGAGGTTGC
CCAAATTGCCAAGGTTGCCTAGACTGGCCAAGCTATTGATATTCAATCCG
CCCATGCCGCCAAGAGCACTCAGATGAGCAGCCGCCGCCAGGGTGGCCGC
CGAGTATTTGTCGTAGTTTTGGGCCTGCTGTTGCGACTGCTGATCCCGCT
GCTGCTGATCTCTTTCCCGCTGATCGCGCTGCTGTTGCTGCTGCGACTGA
TGGTGATGATCGAGTCGATCGTTGCGGGAGGATCTCGAGGATGTAGTCGG
CTCATGGTGATGCGCTGGCGACGGCCCAGGACTAAGGATACCCGCCTGCT
GAGCGGCAATAGCTGCTGCAGCGGCGGTGGCCGCCGCTCGCGAGGATCGC
GATCCTCCAGATGACGGCGGTGGTGTGGCTTGACTTTGTGGTGGCGGTGG
CGTTGGACGCGGTGTCGCTGGCGTCGGCGTCTGGCA

BS10555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32067-PC 2739 simj-RC 1870..2739 886..17 4350 100 Minus
CG32067-PB 2751 simj-RB 1870..2464 886..292 2975 100 Minus
CG32067-PA 2751 simj-RA 1870..2464 886..292 2975 100 Minus
CG32067-PB 2751 simj-RB 2475..2751 293..17 1385 100 Minus
CG32067-PA 2751 simj-RA 2475..2751 293..17 1385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RC 3604 CG32067-RC 2542..3414 886..14 4365 100 Minus
simj-RD 3640 CG32067-RD 2566..3450 886..14 4235 98.6 Minus
simj-RA 3616 CG32067-RA 2542..3426 886..14 4235 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10688003..10688598 886..291 2980 100 Minus
3L 28110227 3L 10688924..10689113 203..14 950 100 Minus
3L 28110227 3L 10688689..10688780 293..202 460 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:59:23 has no hits.

BS10555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:43:29 Download gff for BS10555.3prime
Subject Subject Range Query Range Percent Splice Strand
simj-PC 1871..2739 17..885 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:05:37 Download gff for BS10555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32067-PC 1871..2739 17..885 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:54:57 Download gff for BS10555.3prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 2543..3414 14..885 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:33 Download gff for BS10555.3prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 2543..3414 14..885 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:33 Download gff for BS10555.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10688004..10688597 292..885 100 -> Minus
3L 10688691..10688780 202..291 100 -> Minus
3L 10688926..10689113 14..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:54:57 Download gff for BS10555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10681104..10681697 292..885 100 -> Minus
arm_3L 10681791..10681880 202..291 100 -> Minus
arm_3L 10682026..10682213 14..201 100   Minus

BS10555.5prime Sequence

847 bp (813 high quality bases) assembled on 2006-04-19

> BS10555.5prime
GAAGTTATCAGTCGACATGGCCAAAATGGAGGTCGACGATGTGGTCGACT
TGAGTTTGGGGTCCGGTCGTGACCCGGCGTTGACCATAACGCCGGCTCCG
CCGCCGGCGGCGCTCAGTAATCGGGATCTGCGTGCGCTGACAGCCAACAA
TGCTGGCCTGACCATCACTCCGTCAGCATCGCCGGCGACCAATAATGGCA
CCACCTCCAATAGCAGTAACACAAACTCCAACAGCAGCAGCACCACCACC
ACCACCAACAACAACAACAACAGTAGCAGTAACACCAATAGCTCCAGCGC
AAACAACAATAACAACAACAACAGCATTAACGCCAGTGATGGTGTCACAG
GTGCGACAAGTGGATCCATAGGCGGCGGTCAGGATGAGAACAAGGTTCAG
CGGAGAGTACTGCGACCACGAACCGAACCCAAATCCTATGCCGAGGCCCC
AGACATTGTGTTACTACCCGCTCGCACAAATGGCCGTCAGCAGAATGGAA
ACATCGATTCGGAGACGGATGACGAGGAGATGCCCCCGTATGTGCCCATC
AAGGAGCTGAGCCATGCAGAGCTCAAGGAGCGCGAGAAGAGTCTGAGGAA
GCTGCGGCAGGATCTGCGCAATGAGGAGACCAAACTGATGCTGCTCAAGA
AACTCAAGCAGTCGCAGCAGGTGATGAAGGAGAATCTGGTGGTGACGCCG
ACCAGCGTATCGCCCAACAATCCGCTATCGGCGATACCCGCCGCTCTCAC
CTCGAAGGGATCGCTGAGTGTGACGCCCACGTCGGCGGTACCCCTGCCCG
CCCACAGCAAGGGCAGCAGGAGCAGTTTGAGCGGCAGCGGCGGACCG

BS10555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32067-PB 2751 simj-RB 1..831 17..847 4155 100 Plus
CG32067-PA 2751 simj-RA 1..831 17..847 4155 100 Plus
CG32067-PC 2739 simj-RC 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RE 5110 CG32067-RE 673..1503 17..847 4155 100 Plus
simj-RD 3640 CG32067-RD 673..1503 17..847 4155 100 Plus
simj-RC 3604 CG32067-RC 673..1503 17..847 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10685050..10685880 17..847 4155 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:49:01 has no hits.

BS10555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:43:30 Download gff for BS10555.5prime
Subject Subject Range Query Range Percent Splice Strand
simj-PB 1..831 17..847 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:05:38 Download gff for BS10555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32067-PC 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:26 Download gff for BS10555.5prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 666..1503 10..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:32 Download gff for BS10555.5prime
Subject Subject Range Query Range Percent Splice Strand
simj-RC 666..1503 10..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:32 Download gff for BS10555.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10685043..10685880 10..847 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:26 Download gff for BS10555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10678143..10678980 10..847 99   Plus

BS10555.complete Sequence

2771 bp assembled on 2010-05-10

GenBank Submission: KX806195

> BS10555.complete
GAAGTTATCAGTCGACATGGCCAAAATGGAGGTCGACGATGTGGTCGACT
TGAGTTTGGGGTCCGGTCGTGACCCGGCGTTGACCATAACGCCGGCTCCG
CCGCCGGCGGCGCTCAGTAATCGGGATCTGCGTGCGCTGACAGCCAACAA
TGCTGGCCTGACCATCACTCCGTCAGCATCGCCGGCGACCAATAATGGCA
CCACCTCCAATAGCAGTAACACAAACTCCAACAGCAGCAGCACCACCACC
ACCACCAACAACAACAACAACAGTAGCAGTAACACCAATAGCTCCAGCGC
AAACAACAATAACAACAACAACAGCATTAACGCCAGTGATGGTGTCACAG
GTGCGACAAGTGGATCCATAGGCGGCGGTCAGGATGAGAACAAGGTTCAG
CGGAGAGTACTGCGACCACGAACCGAACCCAAATCCTATGCCGAGGCCCC
AGACATTGTGTTACTACCCGCTCGCACAAATGGCCGTCAGCAGAATGGAA
ACATCGATTCGGAGACGGATGACGAGGAGATGCCCCCGTATGTGCCCATC
AAGGAGCTGAGCCATGCAGAGCTCAAGGAGCGCGAGAAGAGTCTGAGGAA
GCTGCGGCAGGATCTGCGCAATGAGGAGACCAAACTGATGCTGCTCAAGA
AACTCAAGCAGTCGCAGCAGGTGATGAAGGAGAATCTGGTGGTGACGCCG
ACCAGCGTATCGCCCAACAATCCGCTATCGGCGATACCCGCCGCTCTCAC
CTCGAAGGGATCGCTGAGTGTGACGCCCACGTCGGCGGTACCCCTGCCCG
CCCACAGCAAGGGCAGCAGGAGCAGTTTGAGCGGCAGCGGCGGACCGGCA
GTGAGCATAAGCGCCACCAACAGTCGAACGGGCAGCTCGAGTTCAGCGGC
GGCGGCTGCTTCGGCAATTGCAGCGGCCGCCATGAGCGGCCAACATCGCA
GCGGTAGCAACTCCATACTGCCGCCGCCACGATCATCGCTGCCCGCTGGT
GCCACCTTGGCCGCCGGCACTACCATCACGCCCGCCACCTCCTCATCGCA
CCGCTCGAGCAATTTGCCGCCGCGCACCAACCTGCCGAATCTCACCATCA
CGCCATCGGTGACCATCACGCCCACATCGGCACCGCCCTCCAGTCTGAAA
CCACGCAATGTACCTGGGACCATAAGCAATTCTGTTTCCATCACGCCGGC
GCTACCACTGTCCCAATCGCATCAGAATCAGCACAACGATCAGAAGAATG
ATCGCTCCACGCCAAGAGAAGATGCCCAGACACCAGCTCAAAGACAGGCG
GCGGCTAAAATGGCGCTACGCAAGCAGCTGGAAAAGACGCTGCTTCAGAT
TCCGCCACCAAAGCCACCACCGCCAGAGATGCACTTCATTCCCAATCCCA
GCAACACGGATTTTGTGTATCTTCTTGGTTTGGAAACCGTTGTGGATTAT
CTGACCGTCAACAAGAAGGCCAATGCTGTGGCAGCACCATTCCGTTGTGC
CCAGTGCAAGATTGATTTTACACCCGTGTGGAAGTGGGAGAAACAGACCA
ACAAAGATCCCAAAGTGATTTGCGAGCAGTGCGTCACCTCGAATGTGAAG
AAGGCACTCAAGGCGGAGCACACCAACCGACTGAAACAGGCATTCGTTAA
GGCGCTGCAGCAGGAGCAGGAGATCGAACAGCGTTTGGCCAGCCAGAGCA
GTCCATCGCCGGTGGACAACCATGGATCGAGTGGCGGCGGCAATTCGCTG
TCTGTCTCCGCGGTGTCTAGCAATTCCTCATCGTCGCATATGCAGCGGGA
ACGGGAACAGCTGCAGGCGTCGCATGCATCGGCGGCTGCTGCACTTGTCA
ATCTGCCGCCGTCGGTGACAGTGATACCCACCAAATGCCAGACGCCGACG
CCAGCGACACCGCGTCCAACGCCACCGCCACCACAAAGTCAAGCCACACC
ACCGCCGTCATCTGGAGGATCGCGATCCTCGCGAGCGGCGGCCACCGCCG
CTGCAGCAGCTATTGCCGCTCAGCAGGCGGGTATCCTTAGTCCTGGGCCG
TCGCCAGCGCATCACCATGAGCCGACTACATCCTCGAGATCCTCCCGCAA
CGATCGACTCGATCATCACCATCAGTCGCAGCAGCAACAGCAGCGCGATC
AGCGGGAAAGAGATCAGCAGCAGCGGGATCAGCAGTCGCAACAGCAGGCC
CAAAACTACGACAAATACTCGGCGGCCACCCTGGCGGCGGCTGCTCATCT
GAGTGCTCTTGGCGGCATGGGCGGATTGAATATCAATAGCTTGGCCAGTC
TAGGCAACCTTGGCAATTTGGGCAACCTCAGCCAGCTGGGCAATCTGGCT
GCGCTGGGAGGATTGGGTAATTTTGGCGGAGCATCGACGGGTTCGGCTAA
TCCGGCGGCAGGACTGAGCGGTTCCTCGCCAGCTGCTACGGCGGCAGCCA
TGCAGGCGTTCCAGCAGCAGCTCTTTAGAGGACTTGGTGGCAATCCGCAG
CATATGATGCAGTTCGCACCGCTTTTGTACTCTTACCAAATGGCCATGGC
GCAGGCGGCACAAGTGGCAGCCTTCAACAATAACAACAAGAAGAGCAGCT
CGTCCTCCGGATCGGCGAAGAATTCCAGCAGCTCGAACAGCATGGCGGAA
GTTCAGCGGGCGGCGGAGCTGCAGCGCCAATATCTACTGGAGATGATACC
GCCCCAGCAGCAAAGTGGGGCCAGTGGCAGTCGGCAGAACAACTGGAAGG
CCTAAAAGCTTTCTAGACCAT

BS10555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RC 2739 CG32067-PC 1..2739 17..2755 13695 100 Plus
simj-RA 2751 CG32067-PA 1..2751 17..2755 13540 99.6 Plus
simj-RB 2751 CG32067-PB 1..2751 17..2755 13540 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
simj-RC 3604 CG32067-RC 673..3414 17..2758 13710 100 Plus
simj-RA 3616 CG32067-RA 673..3426 17..2758 13555 99.6 Plus
simj-RB 3375 CG32067-RB 432..3185 17..2758 13555 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10687665..10688598 1548..2481 4670 100 Plus
3L 28110227 3L 10685050..10685894 17..861 4225 100 Plus
3L 28110227 3L 10685962..10686263 860..1161 1510 100 Plus
3L 28110227 3L 10687402..10687603 1346..1547 1010 100 Plus
3L 28110227 3L 10688924..10689113 2569..2758 950 100 Plus
3L 28110227 3L 10687236..10687339 1245..1348 520 100 Plus
3L 28110227 3L 10688689..10688780 2479..2570 460 100 Plus
3L 28110227 3L 10687076..10687162 1160..1246 435 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:54:52 has no hits.

BS10555.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:24 Download gff for BS10555.complete
Subject Subject Range Query Range Percent Splice Strand
simj-RC 669..3405 17..2753 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:53 Download gff for BS10555.complete
Subject Subject Range Query Range Percent Splice Strand
simj-RC 673..3409 17..2753 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:21 Download gff for BS10555.complete
Subject Subject Range Query Range Percent Splice Strand
simj-RC 673..3409 17..2753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:21 Download gff for BS10555.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10685050..10685894 17..861 100 -> Plus
3L 10685964..10686261 862..1159 100 -> Plus
3L 10687076..10687162 1160..1246 100 -> Plus
3L 10687238..10687339 1247..1348 100 -> Plus
3L 10687405..10687603 1349..1547 100 -> Plus
3L 10687665..10688597 1548..2480 100 -> Plus
3L 10688691..10688780 2481..2570 100 -> Plus
3L 10688926..10689108 2571..2753 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:53 Download gff for BS10555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10678150..10678994 17..861 100 -> Plus
arm_3L 10679064..10679361 862..1159 100 -> Plus
arm_3L 10680176..10680262 1160..1246 100 -> Plus
arm_3L 10680338..10680439 1247..1348 100 -> Plus
arm_3L 10680505..10680703 1349..1547 100 -> Plus
arm_3L 10680765..10681697 1548..2480 100 -> Plus
arm_3L 10681791..10681880 2481..2570 100 -> Plus
arm_3L 10682026..10682208 2571..2753 100   Plus

BS10555.pep Sequence

Translation from 16 to 2754

> BS10555.pep
MAKMEVDDVVDLSLGSGRDPALTITPAPPPAALSNRDLRALTANNAGLTI
TPSASPATNNGTTSNSSNTNSNSSSTTTTTNNNNNSSSNTNSSSANNNNN
NNSINASDGVTGATSGSIGGGQDENKVQRRVLRPRTEPKSYAEAPDIVLL
PARTNGRQQNGNIDSETDDEEMPPYVPIKELSHAELKEREKSLRKLRQDL
RNEETKLMLLKKLKQSQQVMKENLVVTPTSVSPNNPLSAIPAALTSKGSL
SVTPTSAVPLPAHSKGSRSSLSGSGGPAVSISATNSRTGSSSSAAAAASA
IAAAAMSGQHRSGSNSILPPPRSSLPAGATLAAGTTITPATSSSHRSSNL
PPRTNLPNLTITPSVTITPTSAPPSSLKPRNVPGTISNSVSITPALPLSQ
SHQNQHNDQKNDRSTPREDAQTPAQRQAAAKMALRKQLEKTLLQIPPPKP
PPPEMHFIPNPSNTDFVYLLGLETVVDYLTVNKKANAVAAPFRCAQCKID
FTPVWKWEKQTNKDPKVICEQCVTSNVKKALKAEHTNRLKQAFVKALQQE
QEIEQRLASQSSPSPVDNHGSSGGGNSLSVSAVSSNSSSSHMQREREQLQ
ASHASAAAALVNLPPSVTVIPTKCQTPTPATPRPTPPPPQSQATPPPSSG
GSRSSRAAATAAAAAIAAQQAGILSPGPSPAHHHEPTTSSRSSRNDRLDH
HHQSQQQQQRDQRERDQQQRDQQSQQQAQNYDKYSAATLAAAAHLSALGG
MGGLNINSLASLGNLGNLGNLSQLGNLAALGGLGNFGGASTGSANPAAGL
SGSSPAATAAAMQAFQQQLFRGLGGNPQHMMQFAPLLYSYQMAMAQAAQV
AAFNNNNKKSSSSSGSAKNSSSSNSMAEVQRAAELQRQYLLEMIPPQQQS
GASGSRQNNWKA*

BS10555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
simj-PC 912 CG32067-PC 1..912 1..912 4616 100 Plus
simj-PA 916 CG32067-PA 1..916 1..912 4601 99.6 Plus
simj-PB 916 CG32067-PB 1..916 1..912 4601 99.6 Plus
simj-PD 924 CG32067-PD 1..924 1..912 4582 98.7 Plus
simj-PE 937 CG32067-PE 1..937 1..912 4565 97.2 Plus