Clone Sequence Records
BS10582.3prime Sequence
877 bp (777 high quality bases) assembled on 2006-04-19
> BS10582.3prime
ATGGTCTAGAAAGCTTTCAGACGAAGACGCGCATCAAGTCGCTGCTGGTT
GGAGTGGAGTTGCCTCCCGGATTGGAACTGTTCCCCTTCCAGGGAGGATT
GCTGTTGGCGCTGGGAGTGTTGCTGCTGTTCAAATTGCTGATGTTGTTCA
TGTTGCTGATGTTCATGTTGCTGCTGCTGTCGGACAAGGTGCGCAGCAGC
TGCTTTTTGAGGAGCTGCTGTGGCGAGTGGCTCTGACTTTGGCTGGCGTT
GTGGTTGCTCTGGAGCGGCAGGGTGAAGCTGGGGCGGCCGAGGGGCTGCA
GCTGCTCCAGCTTGCCGGCCAACAGTCGGCGGCGTTTCTCGTAGAAACTG
AAGGTCAGCTTGTTGTCCTCCTCCTTGTCGCGTTCCTTGTCCTTCGTCGG
CTGCTCGCCGCCATCCTCGCTATCCGGTGGTGGCTTCTCCTCCTTCTTCG
CCTTTCCCATTAGCAGTTCATTCAAACGCTTGGCTGTCATGACTCCCGGC
GATCCGCTTGATCCACCACCAGCTTTTCCTCCTACCAGCGCCCTCTTATT
GCACCTCAGGCGATCTTGTGCAATGACATTCGATCGCTGAGCGTAAATGG
TTCTGCCCGAGGCGGGATTCTTACCCGGCAGACCGTTGCTTAACGCTGGC
GAGGGCGGCGGCGGTGTGCGGGCCAGCTGACCGACCACGCCCAGGTGATT
ACCTCCCGACAGGGATAGCAAATTGTTGTTCGCCTTCCGCGTGGTCAACA
GATTCTTGCGGAAGGTGACGCCCAGGCCCTGGGGCAACTTCACCATGCCC
AACGTGTTCATGGCCAANGGACGAGGCGCTCCGGAGTACAGCATCACGTT
AAAGTAGCTGTCCTCGTGGTATTTGGC
BS10582.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9866-PA | 2916 | CG9866-RA | 2056..2916 | 877..17 | 4261 | 99.7 | Minus |
| CG9866-PB | 2916 | CG9866-RB | 2056..2916 | 877..17 | 4261 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atxn7-RD | 3380 | CG9866-RD | 2429..3289 | 877..17 | 4279 | 99.8 | Minus |
| Atxn7-RC | 3655 | CG9866-RC | 2466..3326 | 877..17 | 4279 | 99.8 | Minus |
| Atxn7-RB | 3232 | CG9866-RB | 2281..3141 | 877..17 | 4279 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2379317..2380177 | 877..17 | 4279 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:27:15 has no hits.
BS10582.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:20 Download gff for
BS10582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-PB | 2056..2916 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:06:47 Download gff for
BS10582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-PB | 2056..2916 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:08 Download gff for
BS10582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-RB | 2281..3144 | 12..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:23:35 Download gff for
BS10582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atxn7-RB | 2281..3144 | 12..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:23:35 Download gff for
BS10582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2379317..2380180 | 12..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:08 Download gff for
BS10582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2379317..2380180 | 12..877 | 99 | | Minus |
BS10582.5prime Sequence
803 bp (751 high quality bases) assembled on 2006-04-19
> BS10582.5prime
GAAGTTATCAGTCGACATGCCCCTGAACGATGTGGCCCCCGCCGGTGGTG
GAGCTTATCCGGAAAATGGAACCAAGCACAAGGTGTCGGGAATGTGGAAG
CCGGACTCGTCGGCCGGCTCCAATTCCGGCTCGGGATCGGCGGGACTATC
CCTGTTTAGCCTGCAGGGCCAAAAGTGGCAGCAGGTCTTCGACATGGAAA
AGGTCATCAAGCAACTGCGAACGGCTGAGAAGACGTATCTGCGTGGTGGA
AAGAACTCCTCCGCCGGCGCAGATCAACAGGCGAAGGTGCAGGTCCAGCG
TCTGCAATCGGCGGACATGGCCTACTACGATCTGGCGCCGAAGCTGGCCA
GTCGCGATATAGTACTCTGTAGTTCCTGCTCGGGATGTTACACGAAGGCA
GGTTTCCAGCACCACATTGCGCTGCAGCATCCTAGCGTCTGGGAGGCCAC
ATCCAGCAAAGTGAATCCCAATCCAAATGGGACAGCCATATCCAGCGACT
CTCGTCTCACTGCCACGGAAATCAGTCAGGAGGGCGGGGCTATCGTGCCA
AGTTCGCCCACGGATACGCTTTCGGCCTCGACGCTCTCCAGTTGCTCGAA
CGGGTCCAGCAGCTCGGCTTCACTGCAGCATCCGGCTGCTGCGGGTTCAT
CCAGCACCACGTCGTCTTCGTCTTCGTCGCGTCACAAGAGCAGCAGCAGT
AAAAGTAGCAGTTCCTCCTCGTCTAAGGGCAGCAGCAGCACTTCCGCCGG
AAGTAGGTCGCGTTCGAAGTCGTCAAAGAACCGCCACCACTCCTCGCCAG
CTC
BS10582.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9866-PA | 2916 | CG9866-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
| CG9866-PB | 2916 | CG9866-RB | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atxn7-RD | 3380 | CG9866-RD | 374..1160 | 17..803 | 3935 | 100 | Plus |
| Atxn7-RC | 3655 | CG9866-RC | 411..1197 | 17..803 | 3935 | 100 | Plus |
| Atxn7-RB | 3232 | CG9866-RB | 226..1012 | 17..803 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2377202..2377988 | 17..803 | 3935 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 09:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6882 | 684..740 | 123 | 68.4 | Plus |
BS10582.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:21 Download gff for
BS10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-PB | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:06:49 Download gff for
BS10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-PB | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:12 Download gff for
BS10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-RB | 218..1012 | 6..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:11:26 Download gff for
BS10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atxn7-RB | 218..1012 | 6..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:11:26 Download gff for
BS10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2377194..2377988 | 6..803 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:12 Download gff for
BS10582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2377194..2377988 | 6..803 | 99 | | Plus |
BS10582.complete Sequence
2948 bp assembled on 2010-05-10
GenBank Submission: KX801462
> BS10582.complete
GAAGTTATCAGTCGACATGCCCCTGAACGATGTGGCCCCCGCCGGTGGTG
GAGCTTATCCGGAAAATGGAACCAAGCACAAGGTGTCGGGAATGTGGAAG
CCGGACTCGTCGGCCGGCTCCAATTCCGGCTCGGGATCGGCGGGACTATC
CCTGTTTAGCCTGCAGGGCCAAAAGTGGCAGCAGGTCTTCGACATGGAAA
AGGTCATCAAGCAACTGCGAACGGCTGAGAAGACGTATCTGCGTGGTGGA
AAGAACTCCTCCGCCGGCGCAGATCAACAGGCGAAGGTGCAGGTCCAGCG
TCTGCAATCGGCGGACATGGCCTACTACGATCTGGCGCCGAAGCTGGCCA
GTCGCGATATAGTACTCTGTAGTTCCTGCTCGGGATGTTACACGAAGGCA
GGTTTCCAGCACCACATTGCGCTGCAGCATCCTAGCGTCTGGGAGGCCAC
ATCCAGCAAAGTGAATCCCAATCCAAATGGGACAGCCATATCCAGCGACT
CTCGTCTCACTGCCACGGAAATCAGTCAGGAGGGCGGGGCTATCGTGCCA
AGTTCGCCCACGGATACGCTTTCGGCCTCGACGCTCTCCAGTTGCTCGAA
CGGGTCCAGCAGCTCGGCTTCACTGCAGCATCCGGCTGCTGCGGGTTCAT
CCAGCACCACGTCGTCTTCGTCTTCGTCGCGTCACAAGAGCAGCAGCAGT
AAAAGTAGCAGTTCCTCCTCGTCTAAGGGCAGCAGCAGCACTTCCGCCGG
AAGTAGGTCGCGTTCGAAGTCGTCAAAGAACCGCCACCACTCCTCGCCAG
CTCCGGCCCTGCTGGAGTCCAATCACAAGGAGTCAAAGGGATCGAAGAAG
AGTTCGGCCATAGCCGCTCCTCCCGTCGTCGCTGCTGTTGTTAAGGAGGA
GCCACCATCTGTGGGTGCTGCTCCGGCTGCCATAACCATGTTCTCCTCCT
CCAGCAACTCATCCTGCAGCTTACCGCCCACTCCCACGTTGGGAGCGGCC
TCCAGCGAGGTGGCGATGGGGGTCAACTATTCACCTGCCCAGCTTCAGAC
GGATGCGGAAAAGCTGCCCGAGCTGCAGCCAAAGAAAAAGTTGAAGGGCT
CCAGCGATCATCGAATAAAAGCGGAAAAGGAGAAGAACAAAGATAAGTCT
CTGGTGAATTCCTACGAGCAGCAGCAAGTGCTCAGCGAACTGGACCAGGC
AGTGTCTTCCATCACGGGAGCGGTTTCCGCCGAGCAGGTGGCGCCCGATG
AGGAGGAACTGCCCTTGCCCAACACCTCCGACGAGAACTCCATTTCGCAG
ACGCTCGACGAAATGCTGGACAGCAAGCTGATCAACGAGATTCTGAATAA
CTTCGATGAGAGCGCTCTGGACACATCGCAACAGCAGTCACAACAGCAAG
CGCAGAATGGATCGCTATCGCATCCCGCACAGGCCACTAAAAGGCTGCGC
TTTGAGGACGGAACCATTGGCGAGGATTACGCCGTGTACCAGCAGCAGGC
GGTTCAGCAGGTTTATGGCGAGGAAGAGCATCAGCAGGAGCTGACCACCA
TCGATGCCATGCAGTTGCAGCAACTGATTTACCAGCAGCAGCAGATGCTC
GAGCAGCAGCAACTGCAAGAGCAGCAGCAACAGCAGCAGCAGGATCAGAA
GCTTCAGGATCACGAGCAGCAGCGCCAGTTCAGCGTCTACAACGTGCCGT
CTCTGACGGATGAGGCAATGGTCAATCCACAGCAACAGCAGCTGGAGGAG
CACATGATCCTGCCCAGTATTATATACGAGATCACCGAGTCGAATCCCGT
TTCCATGCTGGAGCAGAAGGTCTTAGCCGAATTCCTAACCAACGCGGGCT
ACGAAAATGTGGACGTGAATGTCGTGCAATCGGGCGGCATACAAACCAAC
TTGAGTTCTGGAACGGAGGCAAACCAACTGGCGGATGAACTGGCCGACTT
TGAGTTCAGTAAACTGGAGACTGTTAGCGACACCGTAAAGACTGTTAAGC
TGGAGGCCAAGGCCGCCAGCCAGCCACCCACAACAAATCCTCAAATCAAT
CACCATCCATCGCTGGCCAATGCCAAATACCACGAGGACAGCTACTTTAA
CGTGATGCTGTACTCCGGAGCGCCTCGTCCCTTGGCCATGAACACGTTTG
GCATGGTGAAGTTGCCCCAGGGCCTGGGCGTCACCTTCCGCAAGAATCTG
TTGACCACGCGGAAGGCGAACAACAATTTGCTATCCCTGTCGGGAGGTAA
TCACCTGGGCGTGGTCGGTCAGCTGGCCCGCACACCGCCGCCGCCCTCGC
CAGCGTTAAGCAACGGTCTGCCGGGTAAGAATCCCGCCTCGGGCAGAACC
ATTTACGCTCAGCGATCGAATGTCATTGCACAAGATCGCCTGAGGTGCAA
TAAGAGGGCGCTGGTAGGAGGAAAAGCTGGTGGTGGATCAAGCGGATCGC
CGGGAGTCATGACAGCCAAGCGTTTGAATGAACTGCTAATGGGAAAGGCG
AAGAAGGAGGAGAAGCCACCACCGGATAGCGAGGATGGCGGCGAGCAGCC
GACGAAGGACAAGGAACGCGACAAGGAGGAGGACAACAAGCTGACCTTCA
GTTTCTACGAGAAACGCCGCCGACTGTTGGCCGGCAAGCTGGAGCAGCTG
CAGCCCCTCGGCCGCCCCAGCTTCACCCTGCCGCTCCAGAGCAACCACAA
CGCCAGCCAAAGTCAGAGCCACTCGCCACAGCAGCTCCTCAAAAAGCAGC
TGCTGCGCACCTTGTCCGACAGCAGCAGCAACATGAACATCAGCAACATG
AACAACATCAGCAATTTGAACAGCAGCAACACTCCCAGCGCCAACAGCAA
TCCTCCCTGGAAGGGGAACAGTTCCAATCCGGGAGGCAACTCCACTCCAA
CCAGCAGCGACTTGATGCGCGTCTTCGTCTGAAAGCTTTCTAGACCAT
BS10582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atxn7-RD | 2916 | CG9866-PD | 1..2916 | 17..2932 | 14580 | 100 | Plus |
| Atxn7-RC | 2916 | CG9866-PC | 1..2916 | 17..2932 | 14580 | 100 | Plus |
| Atxn7-RB | 2916 | CG9866-PB | 1..2916 | 17..2932 | 14580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atxn7-RD | 3380 | CG9866-RD | 374..3289 | 17..2932 | 14580 | 100 | Plus |
| Atxn7-RC | 3655 | CG9866-RC | 411..3326 | 17..2932 | 14580 | 100 | Plus |
| Atxn7-RB | 3232 | CG9866-RB | 226..3141 | 17..2932 | 14580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2378334..2380177 | 1089..2932 | 9220 | 100 | Plus |
| 2L | 23513712 | 2L | 2377202..2378275 | 17..1090 | 5370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6908 | 1521..1693 | 276 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6848 | 1567..1693 | 234 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6882 | 684..740 | 123 | 68.4 | Plus |
BS10582.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:26 Download gff for
BS10582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-RB | 148..3062 | 17..2931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:56 Download gff for
BS10582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-RB | 226..3140 | 17..2931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:25 Download gff for
BS10582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atxn7-RB | 226..3140 | 17..2931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:25 Download gff for
BS10582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2377202..2378275 | 17..1090 | 100 | -> | Plus |
| 2L | 2378336..2380176 | 1091..2931 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:56 Download gff for
BS10582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2377202..2378275 | 17..1090 | 100 | -> | Plus |
| arm_2L | 2378336..2380176 | 1091..2931 | 100 | | Plus |
BS10582.pep Sequence
Translation from 16 to 2931
> BS10582.pep
MPLNDVAPAGGGAYPENGTKHKVSGMWKPDSSAGSNSGSGSAGLSLFSLQ
GQKWQQVFDMEKVIKQLRTAEKTYLRGGKNSSAGADQQAKVQVQRLQSAD
MAYYDLAPKLASRDIVLCSSCSGCYTKAGFQHHIALQHPSVWEATSSKVN
PNPNGTAISSDSRLTATEISQEGGAIVPSSPTDTLSASTLSSCSNGSSSS
ASLQHPAAAGSSSTTSSSSSSRHKSSSSKSSSSSSSKGSSSTSAGSRSRS
KSSKNRHHSSPAPALLESNHKESKGSKKSSAIAAPPVVAAVVKEEPPSVG
AAPAAITMFSSSSNSSCSLPPTPTLGAASSEVAMGVNYSPAQLQTDAEKL
PELQPKKKLKGSSDHRIKAEKEKNKDKSLVNSYEQQQVLSELDQAVSSIT
GAVSAEQVAPDEEELPLPNTSDENSISQTLDEMLDSKLINEILNNFDESA
LDTSQQQSQQQAQNGSLSHPAQATKRLRFEDGTIGEDYAVYQQQAVQQVY
GEEEHQQELTTIDAMQLQQLIYQQQQMLEQQQLQEQQQQQQQDQKLQDHE
QQRQFSVYNVPSLTDEAMVNPQQQQLEEHMILPSIIYEITESNPVSMLEQ
KVLAEFLTNAGYENVDVNVVQSGGIQTNLSSGTEANQLADELADFEFSKL
ETVSDTVKTVKLEAKAASQPPTTNPQINHHPSLANAKYHEDSYFNVMLYS
GAPRPLAMNTFGMVKLPQGLGVTFRKNLLTTRKANNNLLSLSGGNHLGVV
GQLARTPPPPSPALSNGLPGKNPASGRTIYAQRSNVIAQDRLRCNKRALV
GGKAGGGSSGSPGVMTAKRLNELLMGKAKKEEKPPPDSEDGGEQPTKDKE
RDKEEDNKLTFSFYEKRRRLLAGKLEQLQPLGRPSFTLPLQSNHNASQSQ
SHSPQQLLKKQLLRTLSDSSSNMNISNMNNISNLNSSNTPSANSNPPWKG
NSSNPGGNSTPTSSDLMRVFV*
BS10582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atxn7-PD | 971 | CG9866-PD | 1..971 | 1..971 | 4914 | 100 | Plus |
| Atxn7-PC | 971 | CG9866-PC | 1..971 | 1..971 | 4914 | 100 | Plus |
| Atxn7-PB | 971 | CG9866-PB | 1..971 | 1..971 | 4914 | 100 | Plus |
| Atxn7-PA | 971 | CG9866-PA | 1..971 | 1..971 | 4914 | 100 | Plus |
| sr-PE | 906 | CG7847-PE | 44..429 | 157..556 | 209 | 22.9 | Plus |
