Clone BS10605 Report

Search the DGRC for BS10605

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG8494-RA
Protein status:BS10605.pep: full length peptide match
Sequenced Size:2960

Clone Sequence Records

BS10605.complete Sequence

2960 bp assembled on 2009-12-07

GenBank Submission: KX806220

> BS10605.complete
GAAGTTATCAGTCGACATGAGTTTGAGTTCCAACCCAAATCCGCACAATC
CATATGTAGAGCACCGCAACCGCACCATACACAGCAGCCAGGGCCACACG
CTGGCGAACGGGTATGCCATGGGTGATCCAAGGAGCAGCCGATGTCACGA
CAAACTCTTCAGCGGATCGCTAAAATCGCTTGCACGGCGCGAGGACTCGA
ACGCCAGTGACAGTGAGGGCACAGACACAGCAAAGGGCTCGGGCACGGGA
CTCGTGGGCCTGCAGAACATTGCGAATACCTGCTATATGAACTCGGCACT
ACAGGCACTGAGTAATTTGCCGCCGATGACACACTACTTTATCAACTGCA
GCGACCTTGTGGAGTACATAGCAGAGCAGAGCGCACGTCGCTGCAAGCCC
GGCGGGCTGGCCAAGAGTTATCGTCGCTTGATGCAGGAAATCTGGCAGGA
TGTCGATGATCCCAAAGAGTTTATTGCCCCGCGTGGTATTCTGTATGGCA
TTCGCACGGTTCATCCCATGTTTCGGGGCTATCAGCAACACGATACCCAG
GAGTTCTTGCGGTGCTTCATGGACCAGCTGCACGAGGAGCTGACAGAGCA
GGTCTCAATGCTGCCGCAGACGCAGAATCAGCCGCAATACCAGTCACTTC
AGCAGCAGCAGCCCAGCGAAACGGATGACGAAAACGATGATGAGGCAGCG
CCTGCGTCCTTGTCACATGCATCCGAAAGCGAATACGACACCTGTGAAAG
CAGCATGTCGGAGCGATCGGCAGAGGTGTTGCTAAAGACAGAGTACTTTG
TAACGCCCTGTCGGACAAATGGTTCCAACAGTGGGCTGCCAGAAGGCCAT
TCGGTGCAATTGCAGCAGGCACCGTTGCAGCATCAGCAAAAAAATGCCTC
CTCCGCCGAACAGAAACCTATAGAAGCAGCGCGCTCAATAATCAGCGACG
TGTTCGATGGCAAGCTTTTGTCCTCGGTGCAGTGCCTGACCTGCGATCGT
GTGTCCACACGCGAGGAAACATTCCAGGATCTCTCGCTGCCCATTCCCAA
TCGTGATTTTCTGAACGTTCTTCATCAAACCCATAGCTTAAGCGTGCAAA
GTTTGAATGCCGCTGAAACTTCCGCTAGGACCAACGAAGGCTGGCTGTCC
TGGATGTGGAATATGCTGCGCTCCTGGATTTACGGACCCTCGGTGACGCT
CTACGACTGCATGGCCAGTTTTTTCAGCGCGGATGAGTTGAAGGGAGACA
ACATGTACAGCTGCGAGCGCTGCAACAAACTTCGGACGGGAATAAAGTAC
TCCCGCGTCCTCACCTTGCCAGAGGTTTTGTGTATCCACCTGAAGCGGTT
TCGCAACGATCTTTCTTATAGTTCAAAAATCTCCTCGGACGTTTACTTTC
CGCTGGAGGGCTTCGACATGCGGCCGTACATTCACAAGGATTGCAAGAGC
GAGGTGGCCATTTACAACCTGTCGTCGGTGATTTGCCATCATGGAACAGT
GGGTGGTGGCCATTATACTTGCTTCGCACGCAATACGCTCAACGGAAAGT
GGTATGAGTTCGATGATCAGTTTGTGACGGAGGTTTCTTCGGAGCTGGTG
CAGTCCTGCCAGGCGTATGTTCTCTTTTACCACAAACACAATCCCCAGAT
GAAGCTAGTCAGGGATGAGGCGATGACTTTGTCGACTTCCCATCCCCTGT
GTGATTCGGACATTCAGTTCTATATAACCCGCGAATGGCTCTCAAGATTG
GCCACCTTTTCAGAACCAGGACCTATAAACAACCAGGAGATGTTGTGCCC
CCATGGTGGGATTTTGCATTCCAAGGCGGACGTAATCAGCCAGATTGCGG
TGCCAATCTCTCAGCCGCTATGGGACTATCTCTACCGGACTTTCGGTGGC
GGACCAGCAGTGAATATAATATTCGAGTGCGAGATCTGCAAGCGGGCAGC
AGAGACCCTTTCCCGTCGTCAACAATATGAACTGAACGAGTTCACAAAAT
ACAATGGGCTGCAGAACGAATTTGATTCGACGGCCATTTATGCAATCGCA
ATGCCATGGCTGCGCTCATGGCAGCAGTTTTCGCGCGGAAAAACCCACAA
GGATCCGGGACCGATTACCAACGAGGGCATCGCTGCTCCCACGGAAAATG
GAAGTGCGACTGTGAGCTGCGTGCGTTTGGGCTCGGATTATGCCCAACTG
AATGCGCGCTTGTGGCGATTCCTGCATAACATCTATGGTGGTGGTCCGGA
AATTATACTTCGACAGGCCCTGTCAGATGAGGACGATGCCGAGGAAATAG
AAATCATCGATCAAGATGATGAGTGCGACGATGATGAGGATCAGGATCTG
GAAGGGGAAGGAGAAGACGAGGAGATTGCGGCAGCCAGCTATCAGCACAA
TCATTCCGACACCGAAAGCAATTTGGGTATTCGCAATACCCCGAGTCCAA
GTCCCAGTACCAGCCCCAGTCCAAGCCTAACCGGCACGCGTCAGCCGATG
GAGACGGAGTCGGACCTGCGACCAAGTAGTTCAAAGTCCAAGCGCAGCAG
GTCCAAAATGAAGGTGTCCGCCCTGCGTTTGAATATGCGTAATAGAGGCA
AGCGCAATCGCAGTGCGTTCAAGCAGTACGCCGAGATGTTTGGAGCTAAA
GGAAACTACAATGCCCACAGCAATGCCGAACCCGTAGTGTCTGAGAAAGA
TGAGAAGGATAAGGACAACGACCGAACTGTTGCATTTCCGAGCGAATACA
GCTTACCCATTTCGATACCATTCCAAAGCGACAATTTCCAGGTGAACGGT
GTGCACGAGAAGTCACGTGACAAGGGAAAATTGCGGAATAGTTCAAAAAG
CGGCAGCACTGCTGCCACCAAGGAGAACGTCACGCTTCAAAAGTTCGTGA
CCCTGCGCGAGGCCAATGGGCCGAGTGACGAGACTGATATTTGAAAGCTT
TCTAGACCAT

BS10605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8494-RA 2928 CG8494-PA 1..2928 17..2944 14640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8494-RA 3423 CG8494-RA 99..3026 17..2944 14640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14241484..14242878 1258..2652 6975 100 Plus
2R 25286936 2R 14240633..14241427 466..1260 3975 100 Plus
2R 25286936 2R 14240210..14240577 100..467 1840 100 Plus
2R 25286936 2R 14242964..14243258 2650..2944 1475 100 Plus
2R 25286936 2R 14240030..14240113 17..100 420 100 Plus
Blast to na_te.dros performed 2014-11-28 02:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1059..1158 573..671 155 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6823 569..674 138 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2421 571..662 127 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6821 573..662 126 60 Plus

BS10605.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:20 Download gff for BS10605.complete
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 94..3020 17..2943 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:20 Download gff for BS10605.complete
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 99..3025 17..2943 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:31 Download gff for BS10605.complete
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 94..3020 17..2943 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:32 Download gff for BS10605.complete
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 99..3025 17..2943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:32 Download gff for BS10605.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14240030..14240113 17..100 100 -> Plus
2R 14240211..14240577 101..467 100 -> Plus
2R 14240635..14241427 468..1260 100 -> Plus
2R 14241487..14242877 1261..2651 100 -> Plus
2R 14242966..14243257 2652..2943 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:20 Download gff for BS10605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10127535..10127618 17..100 100 -> Plus
arm_2R 10127716..10128082 101..467 100 -> Plus
arm_2R 10128140..10128932 468..1260 100 -> Plus
arm_2R 10128992..10130382 1261..2651 100 -> Plus
arm_2R 10130471..10130762 2652..2943 100   Plus

BS10605.3prime Sequence

862 bp (861 high quality bases) assembled on 2006-04-19

> BS10605.3prime
ATGGTCTAGAAAGCTTTCAAATATCAGTCTCGTCACTCGGCCCATTGGCC
TCGCGCAGGGTCACGAACTTTTGAAGCGTGACGTTCTCCTTGGTGGCAGC
AGTGCTGCCGCTTTTTGAACTATTCCGCAATTTTCCCTTGTCACGTGACT
TCTCGTGCACACCGTTCACCTGGAAATTGTCGCTTTGGAATGGTATCGAA
ATGGGTAAGCTGTATTCGCTCGGAAATGCAACAGTTCGGTCGTTGTCCTT
ATCCTTCTCATCTTTCTCAGACACTACGGGTTCGGCATTGCTGTGGGCAT
TGTAGTTTCCTTTAGCTCCAAACATCTCGGCGTACTGCTTGAACGCACTG
CGATTGCGCTTGCCTCTATTACGCATATTCAAACGCAGGGCGGACACCTT
CATTTTGGACCTGCTGCGCTTGGACTTTGAACTACTTGGTCGCAGGTCCG
ACTCCGTCTCCATCGGCTGACGCGTGCCGGTTAGGCTTGGACTGGGGCTG
GTACTGGGACTTGGACTCGGGGTATTGCGAATACCCAAATTGCTTTCGGT
GTCGGAATGATTGTGCTGATAGCTGGCTGCCGCAATCTCCTCGTCTTCTC
CTTCCCCTTCCAGATCCTGATCCTCATCATCGTCGCACTCATCATCTTGA
TCGATGATTTCTATTTCCTCGGCATCGTCCTCATCTGACAGGGCCTGTCG
AAGTATAATTTCCGGACCACCACCATAGATGTTATGCAGGAATCGCCACA
AGCGCGCATTCAGTTGGGCATAATCCGAGCCCAAACGCACGCAGCTCACA
GTCGCACTTCCATTTTCCGTGGGAGCAGCGATGCCCTCGTTGGTAATCGG
TCCCGGATCCTT

BS10605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8494-PA 2928 CG8494-RA 2083..2928 862..17 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8494-RA 3423 CG8494-RA 2181..3026 862..17 4230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14242325..14242878 862..309 2770 100 Minus
2R 25286936 2R 14242964..14243258 311..17 1475 100 Minus
Blast to na_te.dros performed 2015-02-09 02:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2222..2268 669..623 109 70.2 Minus
transib4 2656 transib4 TRANSIB4 2656bp 562..683 342..220 108 55.3 Minus

BS10605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:41 Download gff for BS10605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-PA 2083..2928 17..862 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:18 Download gff for BS10605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-PA 2083..2928 17..862 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:49:35 Download gff for BS10605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 2181..3026 17..862 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:22:59 Download gff for BS10605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 2181..3026 17..862 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:22:59 Download gff for BS10605.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14242325..14242877 310..862 100 -> Minus
2R 14242966..14243258 17..309 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:49:35 Download gff for BS10605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10129830..10130382 310..862 100 -> Minus
arm_2R 10130471..10130763 17..309 100   Minus

BS10605.5prime Sequence

842 bp (818 high quality bases) assembled on 2006-04-19

> BS10605.5prime
GAAGTTATCAGTCGACATGAGTTTGAGTTCCAACCCAAATCCGCACAATC
CATATGTAGAGCACCGCAACCGCACCATACACAGCAGCCAGGGCCACACG
CTGGCGAACGGGTATGCCATGGGTGATCCAAGGAGCAGCCGATGTCACGA
CAAACTCTTCAGCGGATCGCTAAAATCGCTTGCACGGCGCGAGGACTCGA
ACGCCAGTGACAGTGAGGGCACAGACACAGCAAAGGGCTCGGGCACGGGA
CTCGTGGGCCTGCAGAACATTGCGAATACCTGCTATATGAACTCGGCACT
ACAGGCACTGAGTAATTTGCCGCCGATGACACACTACTTTATCAACTGCA
GCGACCTTGTGGAGTACATAGCAGAGCAGAGCGCACGTCGCTGCAAGCCC
GGCGGGCTGGCCAAGAGTTATCGTCGCTTGATGCAGGAAATCTGGCAGGA
TGTCGATGATCCCAAAGAGTTTATTGCCCCGCGTGGTATTCTGTATGGCA
TTCGCACGGTTCATCCCATGTTTCGGGGCTATCAGCAACACGATACCCAG
GAGTTCTTGCGGTGCTTCATGGACCAGCTGCACGAGGAGCTGACAGAGCA
GGTCTCAATGCTGCCGCAGACGCAGAATCAGCCGCAATACCAGTCACTTC
AGCAGCAGCAGCCCAGCGAAACGGATGACGAAAACGATGATGAGGCAGCG
CCTGCGTCCTTGTCACATGCATCCGAAAGCGAATACGACACCTGTGAAAG
CAGCATGTCGGAGCGATCGGCAGAGGTGTTGCTAAAGACAGAGTACTTTG
TAACGCCCTGTCGGACAAATGGTTCCAACAGTGGGCTGCCAG

BS10605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8494-PA 2928 CG8494-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8494-RA 3423 CG8494-RA 99..924 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14240633..14241009 466..842 1885 100 Plus
2R 25286936 2R 14240210..14240577 100..467 1840 100 Plus
2R 25286936 2R 14240030..14240113 17..100 420 100 Plus
Blast to na_te.dros performed 2015-02-11 10:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1059..1158 573..671 155 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6823 569..674 138 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2421 571..662 127 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6821 573..662 126 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6931 572..675 118 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2368 608..671 115 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6788 597..662 114 63.6 Plus

BS10605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:42 Download gff for BS10605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:19 Download gff for BS10605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:30:21 Download gff for BS10605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 99..924 17..842 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:27 Download gff for BS10605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8494-RA 99..924 17..842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:27 Download gff for BS10605.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14240030..14240113 17..100 100 -> Plus
2R 14240211..14240577 101..467 100 -> Plus
2R 14240635..14241009 468..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:30:21 Download gff for BS10605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10127535..10127618 17..100 100 -> Plus
arm_2R 10127716..10128082 101..467 100 -> Plus
arm_2R 10128140..10128514 468..842 100   Plus

BS10605.pep Sequence

Translation from 16 to 2943

> BS10605.pep
MSLSSNPNPHNPYVEHRNRTIHSSQGHTLANGYAMGDPRSSRCHDKLFSG
SLKSLARREDSNASDSEGTDTAKGSGTGLVGLQNIANTCYMNSALQALSN
LPPMTHYFINCSDLVEYIAEQSARRCKPGGLAKSYRRLMQEIWQDVDDPK
EFIAPRGILYGIRTVHPMFRGYQQHDTQEFLRCFMDQLHEELTEQVSMLP
QTQNQPQYQSLQQQQPSETDDENDDEAAPASLSHASESEYDTCESSMSER
SAEVLLKTEYFVTPCRTNGSNSGLPEGHSVQLQQAPLQHQQKNASSAEQK
PIEAARSIISDVFDGKLLSSVQCLTCDRVSTREETFQDLSLPIPNRDFLN
VLHQTHSLSVQSLNAAETSARTNEGWLSWMWNMLRSWIYGPSVTLYDCMA
SFFSADELKGDNMYSCERCNKLRTGIKYSRVLTLPEVLCIHLKRFRNDLS
YSSKISSDVYFPLEGFDMRPYIHKDCKSEVAIYNLSSVICHHGTVGGGHY
TCFARNTLNGKWYEFDDQFVTEVSSELVQSCQAYVLFYHKHNPQMKLVRD
EAMTLSTSHPLCDSDIQFYITREWLSRLATFSEPGPINNQEMLCPHGGIL
HSKADVISQIAVPISQPLWDYLYRTFGGGPAVNIIFECEICKRAAETLSR
RQQYELNEFTKYNGLQNEFDSTAIYAIAMPWLRSWQQFSRGKTHKDPGPI
TNEGIAAPTENGSATVSCVRLGSDYAQLNARLWRFLHNIYGGGPEIILRQ
ALSDEDDAEEIEIIDQDDECDDDEDQDLEGEGEDEEIAAASYQHNHSDTE
SNLGIRNTPSPSPSTSPSPSLTGTRQPMETESDLRPSSSKSKRSRSKMKV
SALRLNMRNRGKRNRSAFKQYAEMFGAKGNYNAHSNAEPVVSEKDEKDKD
NDRTVAFPSEYSLPISIPFQSDNFQVNGVHEKSRDKGKLRNSSKSGSTAA
TKENVTLQKFVTLREANGPSDETDI*

BS10605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8494-PA 975 CG8494-PA 1..975 1..975 5161 100 Plus
Ubpy-PB 367 CG5798-PB 139..357 282..538 305 32.1 Plus
Ubpy-PA 896 CG5798-PA 668..886 282..538 305 32.1 Plus
not-PC 496 CG4166-PC 262..491 284..541 257 28.8 Plus
not-PB 496 CG4166-PB 262..491 284..541 257 28.8 Plus
Ubpy-PB 367 CG5798-PB 30..139 76..192 190 37.6 Plus
Ubpy-PA 896 CG5798-PA 559..668 76..192 190 37.6 Plus