Clone Sequence Records
BS10607.3prime Sequence
948 bp (840 high quality bases) assembled on 2006-04-19
> BS10607.3prime
ATGGTCTAGAAAGCTTTCATTTGAGCAGGGCATCCACATCGCTCTTGGGG
TCGGGTGCCAGTGAGCTCCAGGGCGCATCGCTGCACAGCGGCAGGGAAAC
CTCGCTGTCCGCCTCCACCACGCAGCTCTCACGCAGTTGAAAGAATTGGC
CCACCAATCCGTCAATCCAGCTGTGCAGCTCCTGTCCCAGCATTTTCCCT
TTGGCCAGGGACTCCTCGCGCATGGTGAACTGCTCGTCGTCGGTTTGAAG
GTGCTGCTGCCACTCCACGGGCATCTCAAAATCTTCAGGCAGAGCTACAG
TCAAGCCGGCGTTTAGCGCCTCAGCATCTGAGGACTTTGCTAGCGGATAG
CCCTTGTAGTAGGCCAGTGGAGCTATTAGGAATTTCAACTGCGCATAGAT
CGAATTGCGGCCTATTAACTTGGCTGTCCAGATGCCCGGTGTGATCGGGT
GTTTGAGCAGGGTTTTCGAGTGGTTTATCACATCGCTGGTGGAATCCTCA
ACATGCAATTCATTAAAATCTTGCAATCGGCCCAGCGGATCTATCCACAG
CAGGGTGAGGTTGTACGAATGGGAAGCGGCGCCCGAATCTGCGTTTGCTT
GGAGTGTGTAGCTCAAAAGCAAGTCACTTTGGGGACCCAAGAGCTTTCCA
AAGTTGCGGGCAATCTGCTCCTTTTGATCGAAATCTGTAGAGACCTCAAA
GTTGCGTAATCGCTTGCTGAAGCGAGCATTCCTCGCCAGCTTTCCTTGCT
GCGTCGGTCGCACTCTCGTCTCCAAGTGCAGCGGCTTTCCAGTAGATCCT
CTGGCTCTGTAGCGCACCAGGAACCCCTTGTACTGGTCCCGGTGGAGGTA
GTGAGTGAGTTCAATCAACTCCAGGGGATACAATTTCGCTTGACGCGCAG
ACAGACGCATTACGCTATCTCCAATGCTTCTGGCCAAGTCGTCTCCTG
BS10607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32300-PB | 2631 | oxt-RB | 1700..2631 | 948..17 | 4660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 1959..2890 | 948..17 | 4660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2259329..2260260 | 17..948 | 4660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:37:57 has no hits.
BS10607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:43 Download gff for
BS10607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-PB | 1700..2631 | 17..948 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:21 Download gff for
BS10607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32300-PB | 1700..2631 | 17..948 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:28:44 Download gff for
BS10607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 1959..2892 | 13..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:55:58 Download gff for
BS10607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 1959..2892 | 13..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:55:58 Download gff for
BS10607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2259327..2260260 | 13..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:28:44 Download gff for
BS10607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2259327..2260260 | 13..948 | 99 | | Plus |
BS10607.5prime Sequence
984 bp (863 high quality bases) assembled on 2006-04-19
> BS10607.5prime
GAAGTTATCAGTCGACATGGAGCAGTCTGTGTCCGCCCGCTGGCTGAAGC
GCTATCGCGCATTCTTCCTCATCCTGCTGCTTATCGTGGCCATCCAGTTG
TTCCTGGCCTACAAGTCCCTGGACATCGTAGGCGGCGGTTCCGGTTCCGG
ATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCGCATGCTCAGG
CACGGGTCCAACCGCCCGCCAGGACCAAGCTTACTGCCCAGCAACTGGGC
TTCCAGCCAGAGTGCGACATTCTCGCCAGAGAGGCCATCTCCGCCCTGCA
GCGCGCCAAAACGAAAGACTGTCGAGAACATATCGCGCAGATCGCCTGCG
CAATCCAAGCCGGACGCTTCTATGCGCCGCAGCTCCGGAGCAGCTGTCCA
GCTGGTAATCACACGGCGAACGTTTCTTTGGGATGCTTCAAGGATGAGAA
AGATCGCCGCCTTCTGGCCGGCTACTACAGCAGCTCCAAGACCTCCAATT
CTCCGGCCAAATGCGTGGAGCTATGTCTGCAAAGCGGTTACCCGTACGCA
GGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGTTACGACCCGCCTCCTAA
AGCGTCGAAGCTGCCGGACTCCAGTTGCAACACCAAGTGCCTGGGCAACG
CCAAGGAAATCTGCGGCGGATTCTATGCCATGAACATATACGAGACCGGA
ATAGCCAAGTTCACCGCTCAACTGGCGGCCACCACTCCTTCGGAGGAAAC
GAAGCGCGTGCGGATCGCATTTCTGCTGACGCTCAACGGAAGAGCGCTGC
GTCAGGTGCACCGACTTCTGAAGGCGCTCTATGCACCGGAGCACGTTTAC
TACATCCATGTGGACGAGCGCCAAGATTACCTGTAACGAAAGCTGCTGGA
GTTGGAGTCAAAGTTCCCCAACATACGTTTGGCTCGGAAGCGATTCTCCA
CCATATGGGGTGAAGCCTCTCTCCTGACCATGCT
BS10607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32300-PB | 2631 | oxt-RB | 1..968 | 17..984 | 4790 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 259..1227 | 16..984 | 4815 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2261715..2262406 | 707..16 | 3460 | 100 | Minus |
| 3L | 28110227 | 3L | 2261453..2261613 | 868..708 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 2260992..2261109 | 984..867 | 560 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:37:34 has no hits.
BS10607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:44 Download gff for
BS10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-PB | 1..968 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:23 Download gff for
BS10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32300-PB | 1..968 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:48:03 Download gff for
BS10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 259..1227 | 16..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:25 Download gff for
BS10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 259..1227 | 16..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:25 Download gff for
BS10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2260992..2261107 | 869..984 | 98 | <- | Minus |
| 3L | 2261453..2261613 | 708..868 | 100 | <- | Minus |
| 3L | 2261715..2262406 | 16..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:48:03 Download gff for
BS10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2260992..2261107 | 869..984 | 98 | <- | Minus |
| arm_3L | 2261453..2261613 | 708..868 | 100 | <- | Minus |
| arm_3L | 2261715..2262406 | 16..707 | 100 | | Minus |
BS10607.complete Sequence
2663 bp assembled on 2007-12-11
GenBank Submission: FJ636693
> BS10607.complete
GAAGTTATCAGTCGACATGGAGCAGTCTGTGTCCGCCCGCTGGCTGAAGC
GCTATCGCGCATTCTTCCTCATCCTGCTGCTTATCGTGGCCATCCAGTTG
TTCCTGGCCTACAAGTCCCTGGACATCGTAGGCGGCGGTTCCGGTTCCGG
ATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCGCATGCTCAGG
CACGGGTCCAACCGCCCGCCAGGACCAAGCTTACTGCCCAGCAACTGGGC
TTCCAGCCAGAGTGCGACATTCTCGCCAGAGAGGCCATCTCCGCCCTGCA
GCGCGCCAAAACGAAAGACTGTCGAGAACATATCGCGCAGATCGCCTGCG
CAATCCAAGCCGGACGCTTCTATGCGCCGCAGCTCCGGAGCAGCTGTCCA
GCTGGTAATCACACGGCGAACGTTTCTTTGGGATGCTTCAAGGATGAGAA
AGATCGCCGCCTTCTGGCCGGCTACTACAGCAGCTCCAAGACCTCCAATT
CTCCGGCCAAATGCGTGGAGCTATGTCTGCAAAGCGGTTACCCGTACGCA
GGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGTTACGACCCGCCTCCTAA
AGCGTCGAAGCTGCCGGACTCCAGTTGCAACACCAAGTGCCTGGGCAACG
CCAAGGAAATCTGCGGCGGATTCTATGCCATGAACATATACGAGACCGGA
ATAGCCAAGTTCACCGCTCAACTGGCGGCCACCACTCCTTCGGAGGAAAC
GAAGCGCGTGCGGATCGCATTTCTGCTGACGCTCAACGGAAGAGCGCTGC
GTCAGGTGCACCGACTTCTGAAGGCGCTCTATGCACCGGAGCACGTTTAC
TACATCCATGTGGACGAGCGCCAAGATTACCTGTACCGAAAGCTGCTGGA
GTTGGAGTCAAAGTTCCCCAACATACGTTTGGCTCGGAAGCGATTCTCCA
CCATATGGGGTGGAGCCTCTCTCCTGACCATGCTGCTCCAGTGCATGGAG
GACCTACTGCAGTCCAACTGGCACTGGGACTTTGTGATCAACCTTAGCGA
AAGTGATTTTCCAGTGAAGACCCTCGACAAGTTGGTGGATTTCTTGAGCG
CCAATCCTGGCAGGAACTTTGTTAAGGGCCACGGCCGGGAGACACAGAAG
TTCATCCAGAAGCAGGGCTTGGACAAGACGTTCGTCGAGTGCGACACGCA
CATGTGGAGAATAGGAGATCGGAAGTTGCCAGCTGGCATTCAAGTGGACG
GAGGCAGTGACTGGGTGGCGCTATCACGACCTTTTGTGGGCTATGTTACT
CATCCCAGGGAAGACGATGAGTTGTTGCAGGCTCTTCTAAAGCTCTTCCG
ACACACGCTCCTGCCGGCGGAATCGTTTTTCCACACGGTCCTCAGGAATA
CCAAGCATTGCACGAGCTATGTGGACAACAACCTGCACGTCACCAACTGG
AAGCGGAAGCAGGGTTGCAAATGCCAGTACAAGCATGTGGTGGATTGGTG
CGGATGCAGTCCAAACGACTTTAAGCCAGAAGATTGGCCCAGGCTGCAGG
CCACGGAGCAGAAATCACTGTTCTTCGCCCGCAAGTTTGAGCCCGTTATC
AACCAGGCGGTGCTGCTCCAGCTGGAGGAGTGGCTCTACGGGCCATACAC
CAGCGAATACGCCAATCTGCACGGCTACTGGCAGTCGCTGTATCACCACG
AGGATGTCCATGGATCAGGAGACGACTTGGCCAGAAGCATTGGAGATAGC
GTAATGCGTCTGTCTGCGCGTCAAGCGAAATTGTATCCCCTGGAGTTGAT
TGAACTCACTCACTACCTCCACCGGGACCAGTACAAGGGGTTCCTGGTGC
GCTACAGAGCCAGAGGATCTACTGGAAAGCCGCTGCACTTGGAGACGAGA
GTGCGACCGACGCAGCAAGGAAAGCTGGCGAGGAATGCTCGCTTCAGCAA
GCGATTACGCAACTTTGAGGTCTCTACAGATTTCGATCAAAAGGAGCAGA
TTGCCCGCAACTTTGGAAAGCTCTTGGGTCCCCAAAGTGACTTGCTTTTG
AGCTACACACTCCAAGCAAACGCAGATTCGGGCGCCGCTTCCCATTCGTA
CAACCTCACCCTGCTGTGGATAGATCCGCTGGGCCGATTGCAAGATTTTA
ATGAATTGCATGTTGAGGATTCCACCAGCGATGTGATAAACCACTCGAAA
ACCCTGCTCAAACACCCGATCACACCGGGCATCTGGACAGCCAAGTTAAT
AGGCCGCAATTCGATCTATGCGCAGTTGAAATTCCTAATAGCTCCACTGG
CCTACTACAAGGGCTATCCGCTAGCAAAGTCCTCAGATGCTGAGGCGCTA
AACGCCGGCTTGACTGTAGCTCTGCCTGAAGATTTTGAGATGCCCGTGGA
GTGGCAGCAGCACCTTCAAACCGACGACGAGCAGTTCACCATGCGCGAGG
AGTCCCTGGCCAAAGGGAAAATGCTGGGACAGGAGCTGCACAGCTGGATT
GACGGATTGGTGGGCCAATTCTTTCAACTGCGTGAGAGCTGCGTGGTGGA
GGCGGACAGCGAGGTTTCCCTGCCGCTGTGCAGCGATGCGCCCTGGAGCT
CACTGGCACCCGACCCCAAGAGCGATGTGGATGCCCTGCTCAAATGAAAG
CTTTCTAGACCAT
BS10607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 2631 | CG32300-PB | 1..2631 | 17..2647 | 13155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 259..2890 | 16..2647 | 13160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2259329..2261109 | 2647..867 | 8905 | 100 | Minus |
| 3L | 28110227 | 3L | 2261715..2262406 | 707..16 | 3460 | 100 | Minus |
| 3L | 28110227 | 3L | 2261453..2261613 | 868..708 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:59:18 has no hits.
BS10607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:12:58 Download gff for
BS10607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 1..2631 | 17..2647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:39 Download gff for
BS10607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 256..2889 | 16..2651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:30 Download gff for
BS10607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 260..2889 | 17..2646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:25 Download gff for
BS10607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 257..2886 | 17..2646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:58 Download gff for
BS10607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 260..2889 | 17..2646 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:58 Download gff for
BS10607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2259330..2261107 | 869..2646 | 100 | <- | Minus |
| 3L | 2261453..2261613 | 708..868 | 100 | <- | Minus |
| 3L | 2261715..2262405 | 17..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:30 Download gff for
BS10607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2259330..2261107 | 869..2646 | 100 | <- | Minus |
| arm_3L | 2261453..2261613 | 708..868 | 100 | <- | Minus |
| arm_3L | 2261715..2262405 | 17..707 | 100 | | Minus |
BS10607.pep Sequence
Translation from 16 to 2646
> BS10607.pep
MEQSVSARWLKRYRAFFLILLLIVAIQLFLAYKSLDIVGGGSGSGFDAAE
APASPPPPHAQARVQPPARTKLTAQQLGFQPECDILAREAISALQRAKTK
DCREHIAQIACAIQAGRFYAPQLRSSCPAGNHTANVSLGCFKDEKDRRLL
AGYYSSSKTSNSPAKCVELCLQSGYPYAGVQYGRECFCGYDPPPKASKLP
DSSCNTKCLGNAKEICGGFYAMNIYETGIAKFTAQLAATTPSEETKRVRI
AFLLTLNGRALRQVHRLLKALYAPEHVYYIHVDERQDYLYRKLLELESKF
PNIRLARKRFSTIWGGASLLTMLLQCMEDLLQSNWHWDFVINLSESDFPV
KTLDKLVDFLSANPGRNFVKGHGRETQKFIQKQGLDKTFVECDTHMWRIG
DRKLPAGIQVDGGSDWVALSRPFVGYVTHPREDDELLQALLKLFRHTLLP
AESFFHTVLRNTKHCTSYVDNNLHVTNWKRKQGCKCQYKHVVDWCGCSPN
DFKPEDWPRLQATEQKSLFFARKFEPVINQAVLLQLEEWLYGPYTSEYAN
LHGYWQSLYHHEDVHGSGDDLARSIGDSVMRLSARQAKLYPLELIELTHY
LHRDQYKGFLVRYRARGSTGKPLHLETRVRPTQQGKLARNARFSKRLRNF
EVSTDFDQKEQIARNFGKLLGPQSDLLLSYTLQANADSGAASHSYNLTLL
WIDPLGRLQDFNELHVEDSTSDVINHSKTLLKHPITPGIWTAKLIGRNSI
YAQLKFLIAPLAYYKGYPLAKSSDAEALNAGLTVALPEDFEMPVEWQQHL
QTDDEQFTMREESLAKGKMLGQELHSWIDGLVGQFFQLRESCVVEADSEV
SLPLCSDAPWSSLAPDPKSDVDALLK*
BS10607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-PB | 876 | CG32300-PB | 1..876 | 1..876 | 4654 | 100 | Plus |
