Clone BS10613 Report

Search the DGRC for BS10613

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptinaE-RA
Protein status:BS10613.pep: full length peptide match
Sequenced Size:1967

Clone Sequence Records

BS10613.complete Sequence

1967 bp assembled on 2009-12-07

GenBank Submission: KX804280

> BS10613.complete
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGCGCAAAAATGGCACCTATGAGTTCCTC
AGCGGCGTACCGATTACGGAGCGAACCCAGTTCCTAGCACTCAACGATGC
CAAAAACTATGACTTCTTTCAAACGGTCATCCACTATATGTACTTTGCCC
AGGGAGCCTACGGTTGGCCCATGTACGTCATCATCAATCGCAGCAAGATG
TGGCATTTGGTGCCGGAACTGAAATGCTTTGGCTGCTGTTGCGGTACAAG
TGATGATACAGAGGTTATCCAGGACAATTGCTGCCTGTGCAACTATGCAG
CGCTGAAGAAGACGCTCCAGCTGGGCGACATCGATATCGTTTACGCCACC
TATCACGTGGATGTGGGCGAGACGCCCTTCTTTGTGGCCATCGACTATAC
ACATCGGGCGGTTGTGATCAGCATACGTGGTACCCTTAGCATGAAGGACA
TACTTACGGATCTGAACGCCGAGGGCGAAGTTCTGCCGCTGCAGCCGCCG
CGTGACGATTGGCTGGGCCACAAGGGAATGGTGCAAGCGGCGATCTACAT
ACGCAACAAGCTGCAGGAGGAGAATCTCATCGAGAGGGCACTGCAACGGA
ATCCGGACCGTCAGACGCACACCTTTGATCTGGTGCTGGTGGGCCATTCG
CTGGGCGCCGGAACAGCGGCCATACTCGCCATTCTCCTTAAGCCCGAGCA
TCCAACGCTCCAGTGCTTCAGTTACTCTCCGCCAGGAGGTCTGCTCAGTA
TGCCAGCCGTGGAGTACTCAAAGTCGTTCATCACCTCGGTGGTGCTGGGC
AAGGATGTAGTGCCGCGCATCGGTCTCAATCAAATGGAGGCCCTGCGAGC
GGACCTTATCAATGCCATTCAGCGCAGCGTGGATCCCAAGTGGAAGACCA
TTTCCTGCTCGGTCATCTGCTGTGGCTGTGGACCCGAACCCACTTCCGTG
GTCAACATGTCCGGCCAGGACACGCACATCAATCAGTACCAGGAGGAGCG
TGGCACTGCCCGTTCGACCAGCGCTCATCCGACGGACAGCTCGATAGCTT
TAACTCTGCACCAGCCCTTATATCCGCCCGGTCGCATCATTCACATAGTG
CGACATCATCCCAAGCCCGACGAGCAAAAATACGACAGTGGTTGGAGGTA
GAAGCTTTCTAGACCAT

BS10613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RA 1935 CG33174-PA 1..1935 17..1951 9675 100 Plus
inaE-RF 2448 CG33174-PF 1..1931 17..1947 9655 100 Plus
inaE-RE 3957 CG33174-PE 1..1931 17..1947 9655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RA 4004 CG33174-RA 810..2744 17..1951 9675 100 Plus
inaE-RF 5698 CG33174-RF 810..2740 17..1947 9655 100 Plus
inaE-RE 5086 CG33174-RE 810..2740 17..1947 9655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13803326..13803850 1024..1548 2625 100 Plus
X 23542271 X 13802846..13803267 602..1023 2110 100 Plus
X 23542271 X 13802590..13802770 424..604 905 100 Plus
X 23542271 X 13803905..13804050 1545..1690 730 100 Plus
X 23542271 X 13804292..13804422 1794..1924 655 100 Plus
X 23542271 X 13804121..13804228 1689..1796 540 100 Plus
X 23542271 X 13801901..13802008 111..218 540 100 Plus
X 23542271 X 13802067..13802171 219..323 525 100 Plus
X 23542271 X 13802237..13802338 324..425 510 100 Plus
X 23542271 X 13801679..13801773 17..111 475 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:04:55 has no hits.

BS10613.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:22 Download gff for BS10613.complete
Subject Subject Range Query Range Percent Splice Strand
CG33174-RA 688..2622 17..1951 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:25 Download gff for BS10613.complete
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 810..2744 17..1951 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:08 Download gff for BS10613.complete
Subject Subject Range Query Range Percent Splice Strand
CG33174-RA 688..2622 17..1951 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:35 Download gff for BS10613.complete
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 810..2744 17..1951 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:35 Download gff for BS10613.complete
Subject Subject Range Query Range Percent Splice Strand
X 13801679..13801773 17..111 100 -> Plus
X 13801902..13802008 112..218 100 -> Plus
X 13802067..13802171 219..323 100 -> Plus
X 13802237..13802338 324..425 100 -> Plus
X 13802592..13802769 426..603 100 -> Plus
X 13802848..13803267 604..1023 100 -> Plus
X 13803326..13803850 1024..1548 100 -> Plus
X 13803909..13804050 1549..1690 100 -> Plus
X 13804123..13804227 1691..1795 100 -> Plus
X 13804294..13804421 1796..1923 100 -> Plus
X 13805452..13805479 1924..1951 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:25 Download gff for BS10613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13695712..13695806 17..111 100 -> Plus
arm_X 13695935..13696041 112..218 100 -> Plus
arm_X 13696100..13696204 219..323 100 -> Plus
arm_X 13696270..13696371 324..425 100 -> Plus
arm_X 13696625..13696802 426..603 100 -> Plus
arm_X 13696881..13697300 604..1023 100 -> Plus
arm_X 13697359..13697883 1024..1548 100 -> Plus
arm_X 13697942..13698083 1549..1690 100 -> Plus
arm_X 13698156..13698260 1691..1795 100 -> Plus
arm_X 13698327..13698454 1796..1923 100 -> Plus
arm_X 13699485..13699512 1924..1951 100   Plus

BS10613.3prime Sequence

886 bp (787 high quality bases) assembled on 2006-04-19

> BS10613.3prime
ATGGTCTAGAAAGCTTCTACCTCCAACCACTGTCGTATTTTTGCTCGTCG
GGCTTGGGATGATGTCGCACTATGTGAATGATGCGACCGGGCGGATATAA
GGGCTGGTGCAGAGTTAAAGCTATCGAGCTGTCCGTCGGATGAGCGCTGG
TCGAACGGGCAGTGCCACGCTCCTCCTGGTACTGATTGATGTGCGTGTCC
TGGCCGGACATGTTGACCACGGAAGTGGGTTCGGGTCCACAGCCACAGCA
GATGACCGAGCAGGAAATGGTCTTCCACTTGGGATCCACGCTGCGCTGAA
TGGCATTGATAAGGTCCGCTCGCAGGGCCTCCATTTGATTGAGACCGATG
CGCGGCACTACATCCTTGCCCAGCACCACCGAGGTGATGAACGACTTTGA
GTACTCCACGGCTGGCATACTGAGCAGACCTCCTGGCGGAGAGTAACTGA
AGCACTGGAGCGTTGGATGCTCGGGCTTAAGGAGAATGGCGAGTATGGCC
GCTGTTCCGGCGCCCAGCGAATGGCCCACCAGCACCAGATCAAAGGTGTG
CGTCTGACGGTCCGGATTCCGTTGCAGTGCCCTCTCGATGAGATTCTCCT
CCTGCAGCTTGTTGCGTATGTAGATCGCCGCTTGCACCATTCCCTTGTGG
CCCAGCCAATCGTCACGCGGCGGCTGCAGCGGCAGAACTTCGCCCTCGGC
GTTCAGATCCGTAAGTATGTCCTTCATGCTAAGGGTACCACGTATGCTGA
TCACAACCGCCCGATGTGTATAGTCGATGGCCACAAAGAAGGGCGTCTCG
CCCACATCCACGTGATAGGTGGCGTAAACGATATCGATGTCGCCCAGCTG
GAGCGTCTTCTTCAGCGCTGCATAGTTGCACAGGCA

BS10613.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33174-PA 1935 CG33174-RA 1066..1935 886..17 4350 100 Minus
CG33174-PD 2214 CG33174-RD 1066..1931 886..21 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RA 4004 CG33174-RA 1875..2744 886..17 4350 100 Minus
inaE-RF 5698 CG33174-RF 1875..2740 886..21 4330 100 Minus
inaE-RE 5086 CG33174-RE 1875..2740 886..21 4330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13803384..13803850 886..420 2335 100 Minus
X 23542271 X 13803905..13804050 423..278 730 100 Minus
X 23542271 X 13804292..13804422 174..44 655 100 Minus
X 23542271 X 13804121..13804228 279..172 540 100 Minus
Blast to na_te.dros performed on 2015-02-06 17:39:06 has no hits.

BS10613.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:55 Download gff for BS10613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1067..1935 17..885 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:35 Download gff for BS10613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1067..1935 17..885 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:33:51 Download gff for BS10613.3prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 1876..2746 13..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:34:20 Download gff for BS10613.3prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 1876..2746 13..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:34:20 Download gff for BS10613.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13803385..13803850 420..885 100 -> Minus
X 13803909..13804050 278..419 100 -> Minus
X 13804123..13804227 173..277 100 -> Minus
X 13804294..13804421 45..172 100 -> Minus
X 13805452..13805481 13..44 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:33:51 Download gff for BS10613.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13697418..13697883 420..885 100 -> Minus
arm_X 13697942..13698083 278..419 100 -> Minus
arm_X 13698156..13698260 173..277 100 -> Minus
arm_X 13698327..13698454 45..172 100 -> Minus
arm_X 13699485..13699514 13..44 93   Minus

BS10613.5prime Sequence

918 bp (866 high quality bases) assembled on 2006-04-19

> BS10613.5prime
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGCGCAAAAATGGCACCTATGAGTTCCTC
AGCGGCGTACCGATTACGGAGCGAACCCAGTTCCTAGCACTTCACGATGC
CAAAAACTATGACTTCTT

BS10613.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG33174-PD 2214 CG33174-RD 1..902 17..918 4460 99.7 Plus
CG33174-PA 1935 CG33174-RA 1..902 17..918 4460 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-RF 5698 CG33174-RF 810..1711 17..918 4480 99.8 Plus
inaE-RE 5086 CG33174-RE 810..1711 17..918 4480 99.8 Plus
inaE-RA 4004 CG33174-RA 810..1711 17..918 4480 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13802846..13803162 602..918 1555 99.4 Plus
X 23542271 X 13802590..13802770 424..604 905 100 Plus
X 23542271 X 13801901..13802008 111..218 540 100 Plus
X 23542271 X 13802067..13802171 219..323 525 100 Plus
X 23542271 X 13802237..13802338 324..425 510 100 Plus
X 23542271 X 13801679..13801773 17..111 475 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:49:18 has no hits.

BS10613.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:56 Download gff for BS10613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:36 Download gff for BS10613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33174-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:17:28 Download gff for BS10613.5prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 808..1711 13..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:57 Download gff for BS10613.5prime
Subject Subject Range Query Range Percent Splice Strand
inaE-RA 808..1711 13..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:57 Download gff for BS10613.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13801675..13801773 12..111 98 -> Plus
X 13801902..13802008 112..218 100 -> Plus
X 13802067..13802171 219..323 100 -> Plus
X 13802237..13802338 324..425 100 -> Plus
X 13802592..13802769 426..603 100 -> Plus
X 13802848..13803162 604..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:17:28 Download gff for BS10613.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13695708..13695806 12..111 98 -> Plus
arm_X 13695935..13696041 112..218 100 -> Plus
arm_X 13696100..13696204 219..323 100 -> Plus
arm_X 13696270..13696371 324..425 100 -> Plus
arm_X 13696625..13696802 426..603 100 -> Plus
arm_X 13696881..13697195 604..918 99   Plus

BS10613.pep Sequence

Translation from 16 to 1950

> BS10613.pep
MPGLVVFRRRWSVGSDDLVVPGAFLLTIHFICFVIVSVSLVIFEYNTRIL
SVKLLFYHLIGYLLILFFSICVEIGICVISMRGSILDAEARTSINIWIYL
KSLVILFDIAWLAVGSVWLGHYYTTAPIDDPKKVYIAIIICNWALVVITL
ITIWCTFDAAGRSWVKMKKYQRSMRETESRFNYKRSNSMNRNWRQRKVMR
AYQDSWDHRCRLLFCCMGSSERNRNSFTDIARLLSDFFRELDVVPSDVVA
GLVLLRKFQRLEREAIVRQRKNGTYEFLSGVPITERTQFLALNDAKNYDF
FQTVIHYMYFAQGAYGWPMYVIINRSKMWHLVPELKCFGCCCGTSDDTEV
IQDNCCLCNYAALKKTLQLGDIDIVYATYHVDVGETPFFVAIDYTHRAVV
ISIRGTLSMKDILTDLNAEGEVLPLQPPRDDWLGHKGMVQAAIYIRNKLQ
EENLIERALQRNPDRQTHTFDLVLVGHSLGAGTAAILAILLKPEHPTLQC
FSYSPPGGLLSMPAVEYSKSFITSVVLGKDVVPRIGLNQMEALRADLINA
IQRSVDPKWKTISCSVICCGCGPEPTSVVNMSGQDTHINQYQEERGTARS
TSAHPTDSSIALTLHQPLYPPGRIIHIVRHHPKPDEQKYDSGWR*

BS10613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
inaE-PF 815 CG33174-PF 1..644 1..644 3417 100 Plus
inaE-PE 1318 CG33174-PE 1..644 1..644 3417 100 Plus
inaE-PA 644 CG33174-PA 1..644 1..644 3417 100 Plus
inaE-PD 737 CG33174-PD 1..644 1..644 3417 100 Plus
inaE-PH 729 CG33174-PH 1..636 1..636 3368 100 Plus