Clone Sequence Records
BS10613.complete Sequence
1967 bp assembled on 2009-12-07
GenBank Submission: KX804280
> BS10613.complete
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGCGCAAAAATGGCACCTATGAGTTCCTC
AGCGGCGTACCGATTACGGAGCGAACCCAGTTCCTAGCACTCAACGATGC
CAAAAACTATGACTTCTTTCAAACGGTCATCCACTATATGTACTTTGCCC
AGGGAGCCTACGGTTGGCCCATGTACGTCATCATCAATCGCAGCAAGATG
TGGCATTTGGTGCCGGAACTGAAATGCTTTGGCTGCTGTTGCGGTACAAG
TGATGATACAGAGGTTATCCAGGACAATTGCTGCCTGTGCAACTATGCAG
CGCTGAAGAAGACGCTCCAGCTGGGCGACATCGATATCGTTTACGCCACC
TATCACGTGGATGTGGGCGAGACGCCCTTCTTTGTGGCCATCGACTATAC
ACATCGGGCGGTTGTGATCAGCATACGTGGTACCCTTAGCATGAAGGACA
TACTTACGGATCTGAACGCCGAGGGCGAAGTTCTGCCGCTGCAGCCGCCG
CGTGACGATTGGCTGGGCCACAAGGGAATGGTGCAAGCGGCGATCTACAT
ACGCAACAAGCTGCAGGAGGAGAATCTCATCGAGAGGGCACTGCAACGGA
ATCCGGACCGTCAGACGCACACCTTTGATCTGGTGCTGGTGGGCCATTCG
CTGGGCGCCGGAACAGCGGCCATACTCGCCATTCTCCTTAAGCCCGAGCA
TCCAACGCTCCAGTGCTTCAGTTACTCTCCGCCAGGAGGTCTGCTCAGTA
TGCCAGCCGTGGAGTACTCAAAGTCGTTCATCACCTCGGTGGTGCTGGGC
AAGGATGTAGTGCCGCGCATCGGTCTCAATCAAATGGAGGCCCTGCGAGC
GGACCTTATCAATGCCATTCAGCGCAGCGTGGATCCCAAGTGGAAGACCA
TTTCCTGCTCGGTCATCTGCTGTGGCTGTGGACCCGAACCCACTTCCGTG
GTCAACATGTCCGGCCAGGACACGCACATCAATCAGTACCAGGAGGAGCG
TGGCACTGCCCGTTCGACCAGCGCTCATCCGACGGACAGCTCGATAGCTT
TAACTCTGCACCAGCCCTTATATCCGCCCGGTCGCATCATTCACATAGTG
CGACATCATCCCAAGCCCGACGAGCAAAAATACGACAGTGGTTGGAGGTA
GAAGCTTTCTAGACCAT
BS10613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RA | 1935 | CG33174-PA | 1..1935 | 17..1951 | 9675 | 100 | Plus |
inaE-RF | 2448 | CG33174-PF | 1..1931 | 17..1947 | 9655 | 100 | Plus |
inaE-RE | 3957 | CG33174-PE | 1..1931 | 17..1947 | 9655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RA | 4004 | CG33174-RA | 810..2744 | 17..1951 | 9675 | 100 | Plus |
inaE-RF | 5698 | CG33174-RF | 810..2740 | 17..1947 | 9655 | 100 | Plus |
inaE-RE | 5086 | CG33174-RE | 810..2740 | 17..1947 | 9655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13803326..13803850 | 1024..1548 | 2625 | 100 | Plus |
X | 23542271 | X | 13802846..13803267 | 602..1023 | 2110 | 100 | Plus |
X | 23542271 | X | 13802590..13802770 | 424..604 | 905 | 100 | Plus |
X | 23542271 | X | 13803905..13804050 | 1545..1690 | 730 | 100 | Plus |
X | 23542271 | X | 13804292..13804422 | 1794..1924 | 655 | 100 | Plus |
X | 23542271 | X | 13804121..13804228 | 1689..1796 | 540 | 100 | Plus |
X | 23542271 | X | 13801901..13802008 | 111..218 | 540 | 100 | Plus |
X | 23542271 | X | 13802067..13802171 | 219..323 | 525 | 100 | Plus |
X | 23542271 | X | 13802237..13802338 | 324..425 | 510 | 100 | Plus |
X | 23542271 | X | 13801679..13801773 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:04:55 has no hits.
BS10613.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:22 Download gff for
BS10613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-RA | 688..2622 | 17..1951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:25 Download gff for
BS10613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 810..2744 | 17..1951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:08 Download gff for
BS10613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-RA | 688..2622 | 17..1951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:35 Download gff for
BS10613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 810..2744 | 17..1951 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:35 Download gff for
BS10613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13801679..13801773 | 17..111 | 100 | -> | Plus |
X | 13801902..13802008 | 112..218 | 100 | -> | Plus |
X | 13802067..13802171 | 219..323 | 100 | -> | Plus |
X | 13802237..13802338 | 324..425 | 100 | -> | Plus |
X | 13802592..13802769 | 426..603 | 100 | -> | Plus |
X | 13802848..13803267 | 604..1023 | 100 | -> | Plus |
X | 13803326..13803850 | 1024..1548 | 100 | -> | Plus |
X | 13803909..13804050 | 1549..1690 | 100 | -> | Plus |
X | 13804123..13804227 | 1691..1795 | 100 | -> | Plus |
X | 13804294..13804421 | 1796..1923 | 100 | -> | Plus |
X | 13805452..13805479 | 1924..1951 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:25 Download gff for
BS10613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13695712..13695806 | 17..111 | 100 | -> | Plus |
arm_X | 13695935..13696041 | 112..218 | 100 | -> | Plus |
arm_X | 13696100..13696204 | 219..323 | 100 | -> | Plus |
arm_X | 13696270..13696371 | 324..425 | 100 | -> | Plus |
arm_X | 13696625..13696802 | 426..603 | 100 | -> | Plus |
arm_X | 13696881..13697300 | 604..1023 | 100 | -> | Plus |
arm_X | 13697359..13697883 | 1024..1548 | 100 | -> | Plus |
arm_X | 13697942..13698083 | 1549..1690 | 100 | -> | Plus |
arm_X | 13698156..13698260 | 1691..1795 | 100 | -> | Plus |
arm_X | 13698327..13698454 | 1796..1923 | 100 | -> | Plus |
arm_X | 13699485..13699512 | 1924..1951 | 100 | | Plus |
BS10613.3prime Sequence
886 bp (787 high quality bases) assembled on 2006-04-19
> BS10613.3prime
ATGGTCTAGAAAGCTTCTACCTCCAACCACTGTCGTATTTTTGCTCGTCG
GGCTTGGGATGATGTCGCACTATGTGAATGATGCGACCGGGCGGATATAA
GGGCTGGTGCAGAGTTAAAGCTATCGAGCTGTCCGTCGGATGAGCGCTGG
TCGAACGGGCAGTGCCACGCTCCTCCTGGTACTGATTGATGTGCGTGTCC
TGGCCGGACATGTTGACCACGGAAGTGGGTTCGGGTCCACAGCCACAGCA
GATGACCGAGCAGGAAATGGTCTTCCACTTGGGATCCACGCTGCGCTGAA
TGGCATTGATAAGGTCCGCTCGCAGGGCCTCCATTTGATTGAGACCGATG
CGCGGCACTACATCCTTGCCCAGCACCACCGAGGTGATGAACGACTTTGA
GTACTCCACGGCTGGCATACTGAGCAGACCTCCTGGCGGAGAGTAACTGA
AGCACTGGAGCGTTGGATGCTCGGGCTTAAGGAGAATGGCGAGTATGGCC
GCTGTTCCGGCGCCCAGCGAATGGCCCACCAGCACCAGATCAAAGGTGTG
CGTCTGACGGTCCGGATTCCGTTGCAGTGCCCTCTCGATGAGATTCTCCT
CCTGCAGCTTGTTGCGTATGTAGATCGCCGCTTGCACCATTCCCTTGTGG
CCCAGCCAATCGTCACGCGGCGGCTGCAGCGGCAGAACTTCGCCCTCGGC
GTTCAGATCCGTAAGTATGTCCTTCATGCTAAGGGTACCACGTATGCTGA
TCACAACCGCCCGATGTGTATAGTCGATGGCCACAAAGAAGGGCGTCTCG
CCCACATCCACGTGATAGGTGGCGTAAACGATATCGATGTCGCCCAGCTG
GAGCGTCTTCTTCAGCGCTGCATAGTTGCACAGGCA
BS10613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33174-PA | 1935 | CG33174-RA | 1066..1935 | 886..17 | 4350 | 100 | Minus |
CG33174-PD | 2214 | CG33174-RD | 1066..1931 | 886..21 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RA | 4004 | CG33174-RA | 1875..2744 | 886..17 | 4350 | 100 | Minus |
inaE-RF | 5698 | CG33174-RF | 1875..2740 | 886..21 | 4330 | 100 | Minus |
inaE-RE | 5086 | CG33174-RE | 1875..2740 | 886..21 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13803384..13803850 | 886..420 | 2335 | 100 | Minus |
X | 23542271 | X | 13803905..13804050 | 423..278 | 730 | 100 | Minus |
X | 23542271 | X | 13804292..13804422 | 174..44 | 655 | 100 | Minus |
X | 23542271 | X | 13804121..13804228 | 279..172 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:39:06 has no hits.
BS10613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:55 Download gff for
BS10613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1067..1935 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:35 Download gff for
BS10613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1067..1935 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:33:51 Download gff for
BS10613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 1876..2746 | 13..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:34:20 Download gff for
BS10613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 1876..2746 | 13..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:34:20 Download gff for
BS10613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13803385..13803850 | 420..885 | 100 | -> | Minus |
X | 13803909..13804050 | 278..419 | 100 | -> | Minus |
X | 13804123..13804227 | 173..277 | 100 | -> | Minus |
X | 13804294..13804421 | 45..172 | 100 | -> | Minus |
X | 13805452..13805481 | 13..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:33:51 Download gff for
BS10613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13697418..13697883 | 420..885 | 100 | -> | Minus |
arm_X | 13697942..13698083 | 278..419 | 100 | -> | Minus |
arm_X | 13698156..13698260 | 173..277 | 100 | -> | Minus |
arm_X | 13698327..13698454 | 45..172 | 100 | -> | Minus |
arm_X | 13699485..13699514 | 13..44 | 93 | | Minus |
BS10613.5prime Sequence
918 bp (866 high quality bases) assembled on 2006-04-19
> BS10613.5prime
GAAGTTATCAGTCGACATGCCTGGACTTGTGGTCTTCAGACGTCGCTGGT
CTGTGGGCTCTGATGATCTCGTGGTGCCGGGCGCATTTCTCCTGACGATT
CATTTTATATGTTTTGTGATTGTTAGCGTCTCGTTGGTTATCTTTGAGTA
TAATACACGAATTTTAAGCGTAAAATTATTGTTCTATCATCTAATAGGCT
ACTTGTTGATACTATTTTTTTCAATATGTGTAGAAATAGGTATATGTGTG
ATCTCGATGCGTGGCAGTATTCTGGATGCCGAGGCGCGCACCTCAATCAA
CATTTGGATATATCTCAAGAGCTTGGTTATCCTGTTCGATATTGCCTGGC
TGGCGGTGGGATCCGTTTGGCTGGGGCATTACTACACCACTGCACCGATC
GATGATCCCAAAAAGGTCTACATAGCAATTATCATCTGCAATTGGGCTCT
GGTGGTGATCACCCTAATCACGATATGGTGCACCTTCGATGCTGCCGGAA
GATCCTGGGTAAAGATGAAGAAGTACCAGCGATCAATGCGCGAAACAGAG
TCTCGGTTTAACTACAAGCGGAGCAACAGTATGAACCGCAACTGGCGACA
AAGGAAAGTGATGCGAGCCTACCAGGATAGTTGGGATCATCGCTGCCGCC
TGCTATTCTGCTGCATGGGCTCCTCGGAGCGCAACCGAAACTCATTCACG
GACATCGCCCGTCTGCTGAGCGACTTCTTTCGGGAGTTGGACGTGGTGCC
GTCGGATGTGGTGGCCGGATTAGTTCTGCTTCGCAAGTTTCAGCGTCTCG
AACGCGAGGCCATTGTGAGGCAGCGCAAAAATGGCACCTATGAGTTCCTC
AGCGGCGTACCGATTACGGAGCGAACCCAGTTCCTAGCACTTCACGATGC
CAAAAACTATGACTTCTT
BS10613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33174-PD | 2214 | CG33174-RD | 1..902 | 17..918 | 4460 | 99.7 | Plus |
CG33174-PA | 1935 | CG33174-RA | 1..902 | 17..918 | 4460 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-RF | 5698 | CG33174-RF | 810..1711 | 17..918 | 4480 | 99.8 | Plus |
inaE-RE | 5086 | CG33174-RE | 810..1711 | 17..918 | 4480 | 99.8 | Plus |
inaE-RA | 4004 | CG33174-RA | 810..1711 | 17..918 | 4480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13802846..13803162 | 602..918 | 1555 | 99.4 | Plus |
X | 23542271 | X | 13802590..13802770 | 424..604 | 905 | 100 | Plus |
X | 23542271 | X | 13801901..13802008 | 111..218 | 540 | 100 | Plus |
X | 23542271 | X | 13802067..13802171 | 219..323 | 525 | 100 | Plus |
X | 23542271 | X | 13802237..13802338 | 324..425 | 510 | 100 | Plus |
X | 23542271 | X | 13801679..13801773 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:49:18 has no hits.
BS10613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:56 Download gff for
BS10613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:36 Download gff for
BS10613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33174-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:17:28 Download gff for
BS10613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 808..1711 | 13..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:57 Download gff for
BS10613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaE-RA | 808..1711 | 13..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:57 Download gff for
BS10613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13801675..13801773 | 12..111 | 98 | -> | Plus |
X | 13801902..13802008 | 112..218 | 100 | -> | Plus |
X | 13802067..13802171 | 219..323 | 100 | -> | Plus |
X | 13802237..13802338 | 324..425 | 100 | -> | Plus |
X | 13802592..13802769 | 426..603 | 100 | -> | Plus |
X | 13802848..13803162 | 604..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:17:28 Download gff for
BS10613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13695708..13695806 | 12..111 | 98 | -> | Plus |
arm_X | 13695935..13696041 | 112..218 | 100 | -> | Plus |
arm_X | 13696100..13696204 | 219..323 | 100 | -> | Plus |
arm_X | 13696270..13696371 | 324..425 | 100 | -> | Plus |
arm_X | 13696625..13696802 | 426..603 | 100 | -> | Plus |
arm_X | 13696881..13697195 | 604..918 | 99 | | Plus |
BS10613.pep Sequence
Translation from 16 to 1950
> BS10613.pep
MPGLVVFRRRWSVGSDDLVVPGAFLLTIHFICFVIVSVSLVIFEYNTRIL
SVKLLFYHLIGYLLILFFSICVEIGICVISMRGSILDAEARTSINIWIYL
KSLVILFDIAWLAVGSVWLGHYYTTAPIDDPKKVYIAIIICNWALVVITL
ITIWCTFDAAGRSWVKMKKYQRSMRETESRFNYKRSNSMNRNWRQRKVMR
AYQDSWDHRCRLLFCCMGSSERNRNSFTDIARLLSDFFRELDVVPSDVVA
GLVLLRKFQRLEREAIVRQRKNGTYEFLSGVPITERTQFLALNDAKNYDF
FQTVIHYMYFAQGAYGWPMYVIINRSKMWHLVPELKCFGCCCGTSDDTEV
IQDNCCLCNYAALKKTLQLGDIDIVYATYHVDVGETPFFVAIDYTHRAVV
ISIRGTLSMKDILTDLNAEGEVLPLQPPRDDWLGHKGMVQAAIYIRNKLQ
EENLIERALQRNPDRQTHTFDLVLVGHSLGAGTAAILAILLKPEHPTLQC
FSYSPPGGLLSMPAVEYSKSFITSVVLGKDVVPRIGLNQMEALRADLINA
IQRSVDPKWKTISCSVICCGCGPEPTSVVNMSGQDTHINQYQEERGTARS
TSAHPTDSSIALTLHQPLYPPGRIIHIVRHHPKPDEQKYDSGWR*
BS10613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaE-PF | 815 | CG33174-PF | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PE | 1318 | CG33174-PE | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PA | 644 | CG33174-PA | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PD | 737 | CG33174-PD | 1..644 | 1..644 | 3417 | 100 | Plus |
inaE-PH | 729 | CG33174-PH | 1..636 | 1..636 | 3368 | 100 | Plus |