Clone BS10614 Report

Search the DGRC for BS10614

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)3-3-RA
Protein status:BS10614.pep: full length peptide match
Sequenced Size:2705

Clone Sequence Records

BS10614.3prime Sequence

908 bp (864 high quality bases) assembled on 2006-04-19

> BS10614.3prime
ATGGTCTAGAAAGCTTTTACTGTAGCTCCGTAGAGTCGGCAGTGTTTGAG
TTTGAATTCTCCTCCGACTTCTTTGACGACGGGGAGGAGTCAGATAGATT
GGGCGAGAGGTCGCGCAGCTTGACAACATTTCCCACGGACACCAGATTGG
CCGCCTCAGCCACCGAGTAGCCAATGTCCGGCGGTGTTCCCTCTGGATAG
CCGAGATAGTAATCCGCAATACGTCCCGCCTCGCGCAATCCGCTCAAGTA
CGCTCCATGCACAGTGGCCGGATAATTCCGTATCGTATGCTCACCCGCGA
AGAATAGCCGTGGCAATCCTTCCGCATCCTTACTGGACGGCGGAATGACC
GGCGCCGCCAGCAGATCGTAGTCACTGCCCGAGGAACCAACGGATACGTA
GCTGTACGACCCACGGGCCCAGGGATCGCTGCGCCAACGCGTTACCACTG
TTTCCTTGGGTTGTGGAACAGAGGTATTCCCGAAGATGTTTTTTAGCACC
GACATACAACGCCCGATTATGATGTCATCCGTCACGCTCTCCACCAGATT
CGCTGCCATTCCGGCGACTAGAGCGAGCAACACCGGAGATGAGCTTATAC
TCCAGAACAGAAACATTTCTCCTCTACTCGCCGTCGTGCTGCCCACGTGT
CCGAAGAGATTAGCGTTGGGATCCCAAAAAATGCGATCGAAGCAGAGCAC
AACCTTATTGAGATTCCCAAATCCCAGCCTTTTGATGGCCTGCTGTTTCC
AGTCCGGCAATGGCGGGTCGAACTTGACTGTGTTACTCTGCTGTGACTCC
TTATGTGCTACCGCCACTTTGAGGACGCCCAGAGTAAGTGTGCAGACGAC
AAGGTCTGCCTTGTATGTCATCTGCGAATTGGATGTCTTCAAGTTTTCAG
CCACTACT

BS10614.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17149-PA 2673 CG17149-RA 1782..2673 908..17 4460 100 Minus
CG17149-PB 2673 CG17149-RB 1782..2673 908..17 4460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-3-RC 3555 CG17149-RC 2091..2982 908..17 4460 100 Minus
Su(var)3-3-RB 3615 CG17149-RB 2151..3042 908..17 4460 100 Minus
Su(var)3-3-RA 3681 CG17149-RA 2217..3108 908..17 4460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20229071..20229677 623..17 3035 100 Minus
3L 28110227 3L 20228669..20228956 908..621 1440 100 Minus
Blast to na_te.dros performed on 2015-01-31 17:08:33 has no hits.

BS10614.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:57 Download gff for BS10614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17149-PA 1782..2673 17..908 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:38 Download gff for BS10614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17149-PB 1782..2673 17..908 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:34 Download gff for BS10614.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 2217..3108 17..908 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:54:06 Download gff for BS10614.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 2217..3108 17..908 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:06 Download gff for BS10614.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20228669..20228955 622..908 100 -> Minus
3L 20229073..20229677 17..621 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:34 Download gff for BS10614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20221769..20222055 622..908 100 -> Minus
arm_3L 20222173..20222777 17..621 100   Minus

BS10614.5prime Sequence

948 bp (889 high quality bases) assembled on 2006-04-19

> BS10614.5prime
GAAGTTATCAGTCGACATGAAACCCACCCAGTTCGGAGGCAGTAGCTCCA
AGATGACCGAGCCAATTGAGTATGTGACGCTAATTAGCGACGATTCCGAT
GGTGAGCCCACGCCCAAAAGAAACGTCAATCACCCGCCGTCGGCATTGTC
AGCACCCAATCCTGGTCAGAAACAAAAGCACCCGGATGAGGACTCAAATG
ACGCACCTGCCACCAGCGATGAGCGACGCACAAGTAGGCGCAATCGGCCA
AAAGTGGATTATAGTAACAGGCCTAGTGGAAGTGGAGACACCGCCTCCAA
TGACAAGTCAGGATCGGCATCCATGGGACCTAACAACCAGCAAGCAGAGC
GTCGCAGCCAAAGCCAAACCCGCAAGTCAGAAGCCAATGCTACCTCCTCC
TCCGTGTCCGGACCCAGTGCCGGAAATTCCAGACCGTCCCAGAACGGAGA
TTCCAAGGACCGGGATGCCGGCACGCCCACGGTTTTGTCTGGCCAAGAGG
GCGCCGTCTTCCAATCTCGCCTGCCATTTAACAAAATGACACCCAACGAA
GAGGCCTGCTTTCCGGACATCAGTCGCTCGGGCATTCTCGGCCATCGGGT
ATTCCTCAACATTCGTAACAGCCTCTTGCACATGTGGGTGGACAATCCCA
AGATCCAGCTGAGCTTCGAGATCGCCCTGAAGAACCTGCCGCCGCCATTC
GACAGCGAGCCCAGTTTGGTAAGGCGAGTACACTCGTTTCTGGAGCGTCA
TGGCTTCATTAACTTCGGCATCTTTAAGCGACTTAAGCCTATACCCGCCA
AAAAGCTGGGCAAAGTCATAGTGATTGGGGCAGGGATCTCCGGCTTAGCA
GTGGCACACCAGTTGCAGCAGTTCGGCATGGATGTGATCGTCTTGGAAGC
GCGGGATCGGGTAGGGGGACGGATATCTACGTTTCGGAAGACAGCTAT

BS10614.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17149-PA 2673 CG17149-RA 1..925 17..941 4625 100 Plus
CG17149-PB 2673 CG17149-RB 1..925 17..941 4625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-3-RB 3615 CG17149-RB 370..1302 17..948 4640 99.9 Plus
Su(var)3-3-RA 3681 CG17149-RA 436..1368 17..948 4640 99.9 Plus
Su(var)3-3-RC 3555 CG17149-RC 370..1071 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20226816..20227740 17..941 4625 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:54:57 has no hits.

BS10614.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:58 Download gff for BS10614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17149-PA 1..933 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:40 Download gff for BS10614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17149-PB 1..933 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:01 Download gff for BS10614.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 428..1368 7..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:03 Download gff for BS10614.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 428..1368 7..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:03 Download gff for BS10614.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20226808..20227748 7..948 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:01 Download gff for BS10614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20219908..20220848 7..948 99   Plus

BS10614.complete Sequence

2705 bp assembled on 2009-08-24

GenBank Submission: KX801710

> BS10614.complete
GAAGTTATCAGTCGACATGAAACCCACCCAGTTCGGAGGCAGTAGCTCCA
AGATGACCGAGCCAATTGAGTATGTGACGCTAATTAGCGACGATTCCGAT
GGTGAGCCCACGCCCAAAAGAAACGTCAATCACCCGCCGTCGGCATTGTC
AGCACCCAATCCTGGTCAGAAACAAAAGCACCCGGATGAGGACTCAAATG
ACGCACCTGCCACCAGCGATGAGCGACGCACAAGTAGGCGCAATCGGCCA
AAAGTGGATTATAGTAACAGGCCTAGTGGAAGTGGAGACACCGCCTCCAA
TGACAAGTCAGGATCGGCATCCATGGGACCTAACAACCAGCAAGCAGAGC
GTCGCAGCCAAAGCCAAACCCGCAAGTCAGAAGCCAATGCTACCTCCTCC
TCCGTGTCCGGACCCAGTGCCGGAAATTCCAGACCGTCCCAGAACGGAGA
TTCCAAGGACCGGGATGCCGGCACGCCCACGGTTTTGTCTGGCCAAGAGG
GCGCCGTCTTCCAATCTCGCCTGCCATTTAACAAAATGACACCCAACGAA
GAGGCCTGCTTTCCGGACATCAGTCGCTCGGGCATTCTCGGCCATCGGGT
ATTCCTCAACATTCGTAACAGCCTCTTGCACATGTGGGTGGACAATCCCA
AGATCCAGCTGAGCTTCGAGATCGCCCTGAAGAACCTGCCGCCGCCATTC
GACAGCGAGCCCAGTTTGGTAAGGCGAGTACACTCGTTTCTGGAGCGTCA
TGGCTTCATTAACTTCGGCATCTTTAAGCGACTTAAGCCTATACCCGCCA
AAAAGCTGGGCAAAGTCATAGTGATTGGGGCAGGGATCTCCGGCTTAGCA
GTGGCACACCAGTTGCAGCAGTTCGGCATGGATGTGATCGTCTTGGAAGC
GCGGGATCGGGTAGGGGGACGGATATCTACGTTTCGGAAGAACAGCTATA
TTGCCGATGTGGGAGCAATGGTGGTTACCGGCGTCTATGGCAATCCAATG
ACGATCCTCAGCAAGCAGATCGGTATGGACCTAGTTCCCATCCAGCAGAC
ATGTCCACTTTACGGCCCAGATGGAAAGCCCGTGCCCAAGGAGAAGGATG
ACGTGATCGAGAGAGAATTTAACCGACTGCTGGAATCAGCCAGCTACCTG
TCCCACCGCCTTGATTTTAACTACGCCGGCGATTGCCCAGTTTCGCTGGG
CGATGCCTTGGAGTGGATAATCAGTATGCAGGAGATGCAGGTGATGCACA
AACGGGGGCAGCACATGCAGGAGATCATAGCCACCCAAACGAAGATCATT
GAACAGCGTCGTCGACTGAAAACCCTTAGAGATACCATCGGCAAACTAAA
GAATGAGCACTTGGCAATGATCAACCAGCGGAAACCCAAAGGCACGGATG
GCGATCTGAAATACTGTTACCAAGAGTTTAACATTCGGAACACCCAGATC
AAAATGGAGGAAACGATCAGTACGTTTCACGATCTCCATGCCGAGGAAAA
GCAGATGTTAGCCAAACTCCACGAACTGGAGCAGAACCGACCTAGCGATG
TGTACCTCTCGTCCCGCGACCGCCTGATCTTGGACTGGCATTTTGCCAAC
TTGGAATTTGCTAATGCCACCCGACTAAATAACCTGTCGTTGAAGCACTG
GGATCAGGACGATGACTTCGAGTTTATTGGCCACCACACAACTGTGCGGA
ACGGTTATTCATGTGTGCCTGTAGCTCTTACTGAAAACCTGGACATCCGT
GTCAATAGCGCCGTCAAGGAGATAAAGTACGGCACCAAAGGTGTGGAAGT
AGTGGCTGAAAACTTGAAGACATCCAATTCGCAGATGACATACAAGGCAG
ACCTTGTCGTCTGCACACTTACTCTGGGCGTCCTCAAAGTGGCGGTAGCA
CATAAGGAGTCACAGCAGAGTAACACAGTCAAGTTCGACCCGCCATTGCC
GGACTGGAAACAGCAGGCCATCAAAAGGCTGGGATTTGGGAATCTCAATA
AGGTTGTGCTCTGCTTCGATCGCATTTTTTGGGATCCCAACGCTAATCTC
TTCGGACACGTGGGCAGCACGACGGCGAGTAGAGGAGAAATGTTTCTGTT
CTGGAGTATAAGCTCATCTCCGGTGTTGCTCGCTCTAGTCGCCGGAATGG
CAGCGAATCTGGTGGAGAGCGTGACGGATGACATCATAATCGGGCGTTGT
ATGTCGGTGCTAAAAAACATCTTCGGGAATACCTCTGTTCCACAACCCAA
GGAAACAGTGGTAACGCGTTGGCGCAGCGATCCCTGGGCCCGTGGGTCGT
ACAGCTACGTATCCGTTGGTTCCTCGGGCAGTGACTACGATCTGCTGGCG
GCGCCGGTCATTCCGCCGTCCAGTAAGGATGCGGAAGGATTGCCACGGCT
ATTCTTCGCGGGTGAGCATACGATACGGAATTATCCGGCCACTGTGCATG
GAGCGTACTTGAGCGGATTGCGCGAGGCGGGACGTATTGCGGATTACTAT
CTCGGCTATCCAGAGGGAACACCGCCGGACATTGGCTACTCGGTGGCTGA
GGCGGCCAATCTGGTGTCCGTGGGAAATGTTGTCAAGCTGCGCGACCTCT
CGCCCAATCTATCTGACTCCTCCCCGTCGTCAAAGAAGTCGGAGGAGAAT
TCAAACTCAAACACTGCCGACTCTACGGAGCTACAGTAAAAGCTTTCTAG
ACCAT

BS10614.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-3-RB 2673 CG17149-PB 1..2673 17..2689 13365 100 Plus
Su(var)3-3-RA 2673 CG17149-PA 1..2673 17..2689 13365 100 Plus
Su(var)3-3-RC 2613 CG17149-PC 702..2613 778..2689 9560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-3-RB 3615 CG17149-RB 370..3042 17..2689 13365 100 Plus
Su(var)3-3-RA 3681 CG17149-RA 436..3108 17..2689 13365 100 Plus
Su(var)3-3-RC 3555 CG17149-RC 1071..2982 778..2689 9560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20226816..20228344 17..1545 7645 100 Plus
3L 28110227 3L 20229071..20229677 2083..2689 3035 100 Plus
3L 28110227 3L 20228415..20228956 1544..2085 2710 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:27:07 has no hits.

BS10614.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:26 Download gff for BS10614.complete
Subject Subject Range Query Range Percent Splice Strand
Hdm-RB 314..2984 17..2687 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:00 Download gff for BS10614.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 436..3106 17..2687 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:54 Download gff for BS10614.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 436..3106 17..2687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:54 Download gff for BS10614.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20226816..20228344 17..1545 100 -> Plus
3L 20228417..20228955 1546..2084 100 -> Plus
3L 20229073..20229675 2085..2687 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:00 Download gff for BS10614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20219916..20221444 17..1545 100 -> Plus
arm_3L 20221517..20222055 1546..2084 100 -> Plus
arm_3L 20222173..20222775 2085..2687 100   Plus

BS10614.pep Sequence

Translation from 16 to 2688

> BS10614.pep
MKPTQFGGSSSKMTEPIEYVTLISDDSDGEPTPKRNVNHPPSALSAPNPG
QKQKHPDEDSNDAPATSDERRTSRRNRPKVDYSNRPSGSGDTASNDKSGS
ASMGPNNQQAERRSQSQTRKSEANATSSSVSGPSAGNSRPSQNGDSKDRD
AGTPTVLSGQEGAVFQSRLPFNKMTPNEEACFPDISRSGILGHRVFLNIR
NSLLHMWVDNPKIQLSFEIALKNLPPPFDSEPSLVRRVHSFLERHGFINF
GIFKRLKPIPAKKLGKVIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVG
GRISTFRKNSYIADVGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPLYG
PDGKPVPKEKDDVIEREFNRLLESASYLSHRLDFNYAGDCPVSLGDALEW
IISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLA
MINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAK
LHELEQNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDD
FEFIGHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENL
KTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQ
AIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISS
SPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVT
RWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGE
HTIRNYPATVHGAYLSGLREAGRIADYYLGYPEGTPPDIGYSVAEAANLV
SVGNVVKLRDLSPNLSDSSPSSKKSEENSNSNTADSTELQ*

BS10614.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)3-3-PB 890 CG17149-PB 1..890 1..890 4629 100 Plus
Su(var)3-3-PA 890 CG17149-PA 1..890 1..890 4629 100 Plus
Su(var)3-3-PC 870 CG17149-PC 1..870 1..890 4491 97.8 Plus
CG8032-PB 583 CG8032-PB 334..548 609..817 284 31.4 Plus
CG8032-PA 583 CG8032-PA 334..548 609..817 284 31.4 Plus