Clone Sequence Records
BS10615.3prime Sequence
827 bp (826 high quality bases) assembled on 2006-04-19
> BS10615.3prime
ATGGTCTAGAAAGCTTTCAGTTGGGCCTCAGCGGCAGCATTCCATAATGT
TGCTGCTGTTGTTGCATCATCATCTGTTGCTGCTGCTGCTGCTGTTGTTG
CTGCTGCTGCTGCTGTTGTTGTTGCTGCTGTTGGGCTGTCACCGCTGATC
CTTGCGAGGTTGTGTAGGTCACGGCGCACGCTGCCGGCTGGGATACCACA
ACTGGAGCACTAACTTTTCGCTCCGACTGCGTGCGAATGGGTTGCGGGTG
GGCTGCATTCGGCTGTGGGGGCGGGGCATACATCAGCATGGGCGGTGGCG
GAGGTGATGGCTCCACGCTGGGATGACGAGCTGGCGGCGTGACAGCCGAG
CCGTGATATGAGCCATAGGAGCTGTCGTCCGACTGCGCCGACTGTCCGCG
ATTCCTTGGTCCCGTCACGCCGTACATTTGCTGCGGGTCACGTCGGTCAT
ACTTGTGATTTCCGTCCATCGGCGTCGGATTTGTGCGTGTGCCGTAGACT
GGCTGGAAGCCCTGCGGCTGCTGCTGAGGATCGGACATCATCTGTGGCGG
AGGCTGCATCTGTTGCTGCTGCACTCCCATGTTGGGCTGTTGTTGCTGAA
GCTGCTGCTGCTGCTGCTGTTGTTGTTGCTGCTGGATTGGCTGCTGCTGT
CCGCGCATGGAGCCCCTCATTCCGTAGATGCTCTCGCTGCGCTGCTGCAT
CTGATTCTGGACATTTTGGTTCTGTAAATGGGAAGATTGAGGTGCGGGTG
CCACTTGTTGCTGTTGCTGTTGTTGCTGTTGCTGCTGCTGCTGGGTGCGC
ATGGGATAAAGACTCTGGGCGGGCACC
BS10615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4722-PA | 2091 | bib-RA | 1281..2091 | 827..17 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 3276 | CG4722-RB | 1586..2400 | 827..13 | 4075 | 100 | Minus |
bib-RA | 3276 | CG4722-RA | 1586..2400 | 827..13 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9993848..9994662 | 827..13 | 4075 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2512 | 724..513 | 230 | 61 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2419 | 649..543 | 230 | 71 | Minus |
BS10615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:44:59 Download gff for
BS10615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-PA | 1281..2091 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:41 Download gff for
BS10615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4722-PA | 1281..2091 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:57 Download gff for
BS10615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 1586..2404 | 8..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:05 Download gff for
BS10615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 1586..2404 | 8..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:05 Download gff for
BS10615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9993848..9994666 | 8..827 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:57 Download gff for
BS10615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9993848..9994666 | 8..827 | 99 | | Minus |
BS10615.5prime Sequence
872 bp (852 high quality bases) assembled on 2006-04-19
> BS10615.5prime
GAAGTTATCAGTCGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGG
AGCACAACATAGACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCG
ATGCGTAAGGACTCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTC
CAGCACCCTGCAGGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGC
TGGAGTTTTGGAGATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTAC
GTGTTCATCGTCTGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGT
GTCGTCCGTGCTTTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTA
CACTGACGCAGTGCTTCCTCCACATCTCGGGCGCCCACATCAATCCCGCC
GTAACCCTGGCTCTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGC
CATGTACATAACCGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGC
TTTATGGCGTAACTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATC
TCACATAGCGCTGCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCAT
CCTCACCTTTCTGGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGA
AGAAGTTCATGGGCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCC
TGCTGCTTTGTGTCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCC
TTCGTTTGTGCTTAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGAC
CACTGGTGGGCGGCATGGCCTCTGGCCTGGTGTACGAGTACATCTTCAAC
TCGCGCAACCGCAACCTGCGCC
BS10615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4722-PA | 2091 | bib-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 3276 | CG4722-RB | 302..1161 | 13..872 | 4300 | 100 | Plus |
bib-RA | 3276 | CG4722-RA | 302..1161 | 13..872 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9992254..9992462 | 507..715 | 1045 | 100 | Plus |
2L | 23513712 | 2L | 9984946..9985146 | 13..213 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 9986787..9986956 | 212..381 | 850 | 100 | Plus |
2L | 23513712 | 2L | 9993266..9993423 | 715..872 | 790 | 100 | Plus |
2L | 23513712 | 2L | 9987600..9987727 | 380..507 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 13:15:54 has no hits.
BS10615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:00 Download gff for
BS10615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:43 Download gff for
BS10615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4722-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:11 Download gff for
BS10615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 294..1161 | 5..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:16 Download gff for
BS10615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 294..1161 | 5..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:16 Download gff for
BS10615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9984938..9985146 | 5..213 | 98 | -> | Plus |
2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
2L | 9993267..9993423 | 716..872 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:11 Download gff for
BS10615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9984938..9985146 | 5..213 | 98 | -> | Plus |
arm_2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
arm_2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
arm_2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
arm_2L | 9993267..9993423 | 716..872 | 100 | | Plus |
BS10615.complete Sequence
2123 bp assembled on 2008-08-15
GenBank Submission: KX805030
> BS10615.complete
GAAGTTATCAGTCGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGG
AGCACAACATAGACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCG
ATGCGTAAGGACTCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTC
CAGCACCCTGCAGGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGC
TGGAGTTTTGGAGATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTAC
GTGTTCATCGTCTGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGT
GTCGTCCGTGCTTTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTA
CACTGACGCAGTGCTTCCTCCACATCTCGGGCGCCCACATCAATCCCGCC
GTAACCCTGGCTCTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGC
CATGTACATAACCGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGC
TTTATGGCGTAACTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATC
TCACATAGCGCTGCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCAT
CCTCACCTTTCTGGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGA
AGAAGTTCATGGGCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCC
TGCTGCTTTGTGTCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCC
TTCGTTTGTGCTTAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGAC
CACTGGTGGGCGGCATGGCCTCTGGCCTGGTGTACGAGTACATCTTCAAC
TCGCGCAACCGCAACCTGCGCCACAACAAGGGCAGCATCGACAACGATTC
CAGTTCGATTCACTCGGAGGACGAACTGAACTACGACATGGATATGGAGA
AGCCCAACAAGTATCAGCAGTCGCAGGGCACCTACCCGCGTGGCCAGTCC
AATGGCAATGGCGGAGGACAGGCGGCCGGAAATGGTCAGCACCAAGCTGC
CAACATGGGCCAGATGCCGGGCGTAGTGGCCAATGCCGGTCAGGGCAATT
ACTGCCAGAATCTGTACACTGCTCCGCCGCTCTCCTCGAAGTACGATCAG
CAGCAGGAACCTCTGTACGGTGGAACCCGCTCACTGTACTGCCGTTCGCC
CACTCTGACCAGAAGCAACCTGAATCGCTCGCAATCTGTGTACGCCAAGA
GCAACACGGCCATCAATCGAGACATTGTGCCGCGTCCAGGTCCTCTGGTG
CCCGCCCAGAGTCTTTATCCCATGCGCACCCAGCAGCAGCAGCAACAGCA
ACAACAGCAACAGCAACAAGTGGCACCCGCACCTCAATCTTCCCATTTAC
AGAACCAAAATGTCCAGAATCAGATGCAGCAGCGCAGCGAGAGCATCTAC
GGAATGAGGGGCTCCATGCGCGGACAGCAGCAGCCAATCCAGCAGCAACA
ACAACAGCAGCAGCAGCAGCAGCTTCAGCAACAACAGCCCAACATGGGAG
TGCAGCAGCAACAGATGCAGCCTCCGCCACAGATGATGTCCGATCCTCAG
CAGCAGCCGCAGGGCTTCCAGCCAGTCTACGGCACACGCACAAATCCGAC
GCCGATGGACGGAAATCACAAGTATGACCGACGTGACCCGCAGCAAATGT
ACGGCGTGACGGGACCAAGGAATCGCGGACAGTCGGCGCAGTCGGACGAC
AGCTCCTATGGCTCATATCACGGCTCGGCTGTCACGCCGCCAGCTCGTCA
TCCCAGCGTGGAGCCATCACCTCCGCCACCGCCCATGCTGATGTATGCCC
CGCCCCCACAGCCGAATGCAGCCCACCCGCAACCCATTCGCACGCAGTCG
GAGCGAAAAGTTAGTGCTCCAGTTGTGGTATCCCAGCCGGCAGCGTGCGC
CGTGACCTACACAACCTCGCAAGGATCAGCGGTGACAGCCCAACAGCAGC
AACAACAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAG
ATGATGATGCAACAACAGCAGCAACATTATGGAATGCTGCCGCTGAGGCC
CAACTGAAAGCTTTCTAGACCAT
BS10615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 2214 | CG4722-PB | 1..2095 | 17..2111 | 10475 | 100 | Plus |
bib-RA | 2091 | CG4722-PA | 1..2091 | 17..2107 | 10455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 3276 | CG4722-RB | 302..2400 | 13..2111 | 10495 | 100 | Plus |
bib-RA | 3276 | CG4722-RA | 302..2400 | 13..2111 | 10495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9993266..9994662 | 715..2111 | 6985 | 100 | Plus |
2L | 23513712 | 2L | 9992254..9992462 | 507..715 | 1045 | 100 | Plus |
2L | 23513712 | 2L | 9984946..9985146 | 13..213 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 9986787..9986956 | 212..381 | 850 | 100 | Plus |
2L | 23513712 | 2L | 9987600..9987727 | 380..507 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2512 | 1400..1611 | 230 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2419 | 1475..1581 | 230 | 71 | Plus |
BS10615.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:24:26 Download gff for
BS10615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 292..2402 | 5..2116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:48 Download gff for
BS10615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 306..2395 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:26 Download gff for
BS10615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 304..2393 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:40 Download gff for
BS10615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 306..2395 | 17..2106 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:40 Download gff for
BS10615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9984950..9985146 | 17..213 | 100 | -> | Plus |
2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
2L | 9993267..9994657 | 716..2106 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:48 Download gff for
BS10615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9984950..9985146 | 17..213 | 100 | -> | Plus |
arm_2L | 9986789..9986955 | 214..380 | 100 | -> | Plus |
arm_2L | 9987601..9987727 | 381..507 | 100 | -> | Plus |
arm_2L | 9992255..9992462 | 508..715 | 100 | -> | Plus |
arm_2L | 9993267..9994657 | 716..2106 | 100 | | Plus |
BS10615.pep Sequence
Translation from 16 to 2106
> BS10615.pep
MADESLHTVPLEHNIDYHIVTLFERLEAMRKDSHGGGHGVNNRLSSTLQA
PKRSMQAEIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSVLL
ATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITA
QCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLV
VLCYFVSTDPMKKFMGNSAASIGCAYSACCFVSMPYLNPARSLGPSFVLN
KWDSHWVYWFGPLVGGMASGLVYEYIFNSRNRNLRHNKGSIDNDSSSIHS
EDELNYDMDMEKPNKYQQSQGTYPRGQSNGNGGGQAAGNGQHQAANMGQM
PGVVANAGQGNYCQNLYTAPPLSSKYDQQQEPLYGGTRSLYCRSPTLTRS
NLNRSQSVYAKSNTAINRDIVPRPGPLVPAQSLYPMRTQQQQQQQQQQQQ
QVAPAPQSSHLQNQNVQNQMQQRSESIYGMRGSMRGQQQPIQQQQQQQQQ
QQLQQQQPNMGVQQQQMQPPPQMMSDPQQQPQGFQPVYGTRTNPTPMDGN
HKYDRRDPQQMYGVTGPRNRGQSAQSDDSSYGSYHGSAVTPPARHPSVEP
SPPPPPMLMYAPPPQPNAAHPQPIRTQSERKVSAPVVVSQPAACAVTYTT
SQGSAVTAQQQQQQQQQQQQQQQQQQQQMMMQQQQQHYGMLPLRPN*
BS10615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-PB | 737 | CG4722-PB | 1..696 | 1..696 | 3677 | 100 | Plus |
bib-PA | 696 | CG4722-PA | 1..696 | 1..696 | 3677 | 100 | Plus |
Drip-PE | 239 | CG9023-PE | 15..236 | 63..295 | 365 | 36.1 | Plus |
Drip-PD | 242 | CG9023-PD | 18..239 | 63..295 | 365 | 36.1 | Plus |
Drip-PC | 243 | CG9023-PC | 19..240 | 63..295 | 365 | 36.1 | Plus |