Clone Sequence Records
BS10617.3prime Sequence
914 bp (886 high quality bases) assembled on 2006-04-19
> BS10617.3prime
ATGGTCTAGAAAGCTTTCAACGACGCCAGGAGCGATCCTCGGACTCCTCA
TCCTCCTCCTCATCTTCCAGGCGCAGCTCCGGCAGCGTGTCGCTGCCTAA
CAGACTCTCGCTCTCACTGACGGACTGGATTAATTGTTTGGGGTTCTCTA
GGCTAACGGACATGTCACCTGGTGCAGCGGACTTCTCAACAGGGGCGGCC
ATTGGAGCTGGAGCGGGAGTCACCACGGGAGCCCACGAGATCTGCAGGCG
CTTGTCTTTGTACATTTTGCCCCGGAGCACAGCCTGTTCGGCGTTGAGAC
GGGTTGCGTATGAGAGTATTAACTGTGGAATCTCACGGTCTACATCATGC
TTAGAAATCTCGCCGAAGTTCTTAAAGTGCCCGAGGACAAAGTCTGCCTC
TTCGGCCGCAAAGCCAGTGACCACGATGGCCTTTGGCCGCCTGTCGACAC
GAGTGGGTCCCTCCGGCAGATTCGGACGCTTGCGTCCTGCACCGCCACCG
GGTGCCCCGGAAGCAGGTGCATAGTGGGTAGACTTGTTATTCGCAGCTGA
GCCAACACCAAGATTGCGCTGTAACTCCTCCAATCGCTTCTGAATGGCTG
TAGTGTCGTTGCCCTCCTGTTGCTGGGCGATTAGCTCCAGTTCCATGTCA
AGCAATTCCTTCTTCTGCTGCTCCTTGGTCTTCTTGACGGGCGGCTGTTG
CTGCTGCTGTTGTTGCTGCATTTGTGCTTGCAACTGATCCTGGTCGGCCT
TGATTTCCTTTCGTAGTTTGTCGATTGTCATCTGCAGCACCTTTATTGTC
TGCAGAGTAGGGGCCCTCTGAGGATCCTGCTGGTCCATTCGCTCCACCAG
TTCCAGAGCAGTCTTCATCTGCTTCATATAGCTCTGGAGCAATTCTTGTT
TGCGTTTGCGCAAC
BS10617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10084-PA | 3189 | swm-RA | 2292..3189 | 914..17 | 4490 | 100 | Minus |
| CG10084-PB | 3189 | swm-RB | 2292..3189 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-RD | 3974 | CG10084-RD | 2626..3523 | 914..17 | 4490 | 100 | Minus |
| swm-RC | 4151 | CG10084-RC | 2660..3557 | 914..17 | 4490 | 100 | Minus |
| swm-RB | 4114 | CG10084-RB | 2623..3520 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19496326..19496869 | 914..371 | 2720 | 100 | Minus |
| 2L | 23513712 | 2L | 19497157..19497384 | 244..17 | 1140 | 100 | Minus |
| 2L | 23513712 | 2L | 19496959..19497089 | 372..242 | 655 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..2955 | 745..568 | 201 | 60.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6855..7020 | 759..593 | 201 | 63.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1032..1139 | 760..652 | 182 | 65.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6858 | 744..660 | 173 | 67.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6881 | 732..562 | 170 | 59.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6901 | 746..564 | 170 | 60.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6924 | 877..633 | 166 | 58.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6908 | 744..597 | 162 | 64.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1434..1581 | 806..652 | 153 | 60.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6833 | 744..652 | 151 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2537 | 744..584 | 148 | 58.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2405 | 744..656 | 147 | 68.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2589..2854 | 745..485 | 147 | 55.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2951 | 741..564 | 146 | 59.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2892 | 718..600 | 140 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2425 | 772..604 | 132 | 59.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2396 | 799..656 | 131 | 57.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1185 | 741..651 | 130 | 64.5 | Minus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4497..4588 | 751..663 | 128 | 63 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2664 | 776..694 | 127 | 65.5 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3309 | 727..694 | 125 | 85.3 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..723 | 665..719 | 122 | 69.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5640..5674 | 726..692 | 121 | 82.9 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7095..7129 | 726..692 | 121 | 82.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1511..1588 | 770..693 | 119 | 64.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6922 | 744..662 | 118 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6572 | 712..674 | 116 | 80 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1509..1566 | 754..694 | 109 | 67.2 | Minus |
BS10617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:03 Download gff for
BS10617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-PA | 2292..3189 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:48 Download gff for
BS10617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10084-PB | 2292..3189 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:17 Download gff for
BS10617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RB | 2623..3520 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:47 Download gff for
BS10617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RB | 2623..3520 | 17..914 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:47 Download gff for
BS10617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19497160..19497384 | 17..241 | 100 | | Minus |
| 2L | 19496326..19496869 | 371..914 | 100 | -> | Minus |
| 2L | 19496961..19497089 | 242..370 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:17 Download gff for
BS10617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19496326..19496869 | 371..914 | 100 | -> | Minus |
| arm_2L | 19496961..19497089 | 242..370 | 100 | -> | Minus |
| arm_2L | 19497160..19497384 | 17..241 | 100 | | Minus |
BS10617.5prime Sequence
858 bp (836 high quality bases) assembled on 2006-04-19
> BS10617.5prime
GAAGTTATCAGTCGACATGATTCTGGAGAATTCGGACAAGCTCAAGGATT
GGCTGAGCGTGGTCCTGGAGCCACTCTGCGATGCGGACTCCTCGGCCTTG
GCGCGATATGTCATCGCGCTGCTCAAGAAGGACAAATCGGATAAAGACCT
TAAGCGGATCATGATCGAACAGCTCGATGTTTTCCTGTCCGAGGAGACGA
CACGTTTCGTTGAACGCCTCTTCGATGCCATTGCCAGCGAGGAATACCTG
ACGGTCCCTGCTGCCCCTCTAATAACAGCCTCTAGTGCATCCACCGCTGA
GCTAACAGTCGACCAGGAACTGGCCCTGGTCATTGATGGGCCCCAGGACG
ACATCGAAGCGGTTTTGGTTGCCGATTCCCCTCCACCGCCTCCTAAAGAT
AATGTGATAAAACCCGATAGCAATCAGGTCAAGTTAGAGCAGGCCAGTCA
AGATGCCAGGGAAGCTGAGGCCCTAGCTTTTATCAGCCAGGAAGCCGGCA
TTGCCATGCACGTCCCTACAGATGCCAAGCCAGCCTTTGATCATAAAACC
AAAGACTCCCACAATCAACAGTCAGCCTCCAACTACCAACACCATCATGT
GCGCAGTGCCAGCCCACCGGGCAGAAGCAGCGGCGTCAGCGGAAGTGGAG
GAGGTGGTCCCGGCGGAGCAGGTCTTGCGGCGGGTTATGCTGACAAGGAA
AACCAGCCGCGCGACAGTCGACGACGACGTGCTTCCCTGCGATCCCGTTC
CCGCTCTCGATCGCGTTCTAACGAGCGCGCTTTTCGGCGGTCCAGGTCAC
GCGACCGACGGGTGAACGAACGCGAGAAAACTCAACGACAATTCCGTAAC
AAATCTCC
BS10617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10084-PA | 3189 | swm-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
| CG10084-PB | 3189 | swm-RB | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-RB | 4114 | CG10084-RB | 331..1173 | 16..858 | 4215 | 100 | Plus |
| swm-RA | 4005 | CG10084-RA | 365..1207 | 16..858 | 4215 | 100 | Plus |
| swm-RD | 3974 | CG10084-RD | 331..1176 | 16..858 | 4175 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19494033..19494498 | 76..541 | 2330 | 100 | Plus |
| 2L | 23513712 | 2L | 19494560..19494876 | 542..858 | 1585 | 100 | Plus |
| 2L | 23513712 | 2L | 19493898..19493957 | 16..75 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:34:50 has no hits.
BS10617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:05 Download gff for
BS10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:49 Download gff for
BS10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10084-PB | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:17 Download gff for
BS10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 365..1207 | 16..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:55 Download gff for
BS10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 365..1207 | 16..858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:55 Download gff for
BS10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19493898..19493957 | 16..75 | 100 | -> | Plus |
| 2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
| 2L | 19494560..19494876 | 542..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:17 Download gff for
BS10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19493898..19493957 | 16..75 | 100 | -> | Plus |
| arm_2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
| arm_2L | 19494560..19494876 | 542..858 | 100 | | Plus |
BS10617.complete Sequence
3221 bp assembled on 2010-04-27
GenBank Submission: KX804069
> BS10617.complete
GAAGTTATCAGTCGACATGATTCTGGAGAATTCGGACAAGCTCAAGGATT
GGCTGAGCGTGGTCCTGGAGCCACTCTGCGATGCGGACTCCTCGGCCTTG
GCGCGATATGTCATCGCGCTGCTCAAGAAGGACAAATCGGATAAAGACCT
TAAGCGGATCATGATCGAACAGCTCGATGTTTTCCTGTCCGAGGAGACGA
CACGTTTCGTTGAACGCCTCTTCGATGCCATTGCCAGCGAGGAATACCTG
ACGGTCCCTGCTGCCCCTCTAATAACAGCCTCTAGTGCATCCACCGCTGA
GCTAACAGTCGACCAGGAACTGGCCCTGGTCATTGATGGGCCCCAGGACG
ACATCGAAGCGGTTTTGGTTGCCGATTCCCCTCCACCGCCTCCTAAAGAT
AATGTGATAAAACCCGATAGCAATCAGGTCAAGTTAGAGCAGGCCAGTCA
AGATGCCAGGGAAGCTGAGGCCCTAGCTTTTATCAGCCAGGAAGCCGGCA
TTGCCATGCACGTCCCTACAGATGCCAAGCCAGCCTTTGATCATAAAACC
AAAGACTCCCACAATCAACAGTCAGCCTCCAACTACCAACACCATCATGT
GCGCAGTGCCAGCCCACCGGGCAGAAGCAGCGGCGTCAGCGGAAGTGGAG
GAGGTGGTCCCGGCGGAGCAGGTCTTGCGGCGGGTTATGCTGACAAGGAA
AACCAGCCGCGCGACAGTCGACGACGACGTGCTTCCCTGCGATCCCGTTC
CCGCTCTCGATCGCGTTCTAACGAGCGCGCTTTTCGGCGGTCCAGGTCAC
GCGACCGACGGGTGAACGAACGCGAGAAAACTCAACGACAATTCCGTAAC
AAATCTCCACCAGGCTCGCAGACCGACAATCGCCATCATGGTCGGCGCAA
CTTTGATCGCCGGCGCATCGGTGGCAACGCAGATGATCGTCCTCGATTTG
GCAACAATAAGAGCCGGCGCTCTCACAGTCGGTCAATGTCACCGGAACGA
AACGCGCGGCGCAACCAGAACTCCCCGGACCGAGTACAAACAGCCCAAGC
TAACCTAATTCCCGCTCCAGTGGCGCCGCCAGCACCCGTTGAGCATCCGG
CTTCCCATCCTCGTCAGCGCTGCCGGGACTTTGACGAGAAGGGCTATTGT
GTCAGGGGTGAAACATGTCCCTGGGACCATGGCGTCAATCCGGTAGTGTT
CGAGGGCATCAACAACACGTCCCTCATGATGTCAATGCGCGAGTACAATC
CGGATGCGCCCGAAATATGGGCTAGGAGCGGAGGTCCGCCACCAGGAGCT
GGTCAGGGACCAGTGCCTCCACCAACGCAACCAGGACAGACCACCATTAA
CCCCTTCAGCGGTAATGTGCGACCAACCACGCTAATGAGCGGCTCTGGGC
CCAGTCCGATGGGCGTTCCGAATCCCGCTGACTACGCGCGCAATCCAGGC
GCTCCGCCGCAGGCGGCCATGATGCCATTCCCTTTCAATCCCACTGCGGT
TACCACTCCCTTGCAGCGGCAGCTGATACCTATTCCCGTGGTTGATGGCG
CTCCCACGGGAGGCGTTGCTGAGGTTGGTAAGCGACGTTTCGAACTGGAG
GATACAGTGGCCATTGCCGATGTGCCAACGAAACGAAAGGTGCCGATCAA
CAGTCGTCTTGGCCCGCGTGTCAATCCCAACATGCAGCAGCATAACAGTT
CGCTGGAGCTGAGGAAGGTACCGCGCGGACTTAACACCATCGCTCATTTG
AACAACCACTTTGCTAAGTTCGGAAAGATCGTTAACATTCAGGTTTCGTA
CGAAGGCGATCCAGAGGCAGCTATCGTGACTTTTTCCACTCATGCTGAAG
CTAATGTGGCCTACAGGAGCACGGAGGCGGTGCTAAACAACCGATTTATT
AAGGTCTTCTGGCATAACGACAGCAGCGGAGCGGATGTGGGACAGATGAA
CCAGATGGGCGGCGGTGGAGGAGGCGGTGGACGGAAGAACGCCAGCCAGT
ACCATCTGCATAACGTTCCGGCAGTGCCAACACCCAATGCGGATGGTGCG
AAGATCAGCAATGCCAATCCTCTGACTGAGGCGGGAGCTGGTAACATTGG
CACCCCTGCCACGGAACAGGCCAACACAGCGGCTCCGGCATCAATGCGTC
TCAAGCTAAATACAACGACAGCTGGCGGCTCAGCTGGAGGAGCAGCTGGT
GCGGGAGCACCGGGATCAGGTCGTCCTTTGAACCCTGCCGCCAATGCCGC
TAGCATACGCAAGAAGCAGGAGGAGCAGCAGAAAGCAGTTCACCAACTGG
CTAACGGGTTGCGCAAACGCAAACAAGAATTGCTCCAGAGCTATATGAAG
CAGATGAAGACTGCTCTGGAACTGGTGGAGCGAATGGACCAGCAGGATCC
TCAGAGGGCCCCTACTCTGCAGACAATAAAGGTGCTGCAGATGACAATCG
ACAAACTACGAAAGGAAATCAAGGCCGACCAGGATCAGTTGCAAGCACAA
ATGCAGCAACAACAGCAGCAGCAACAGCCGCCCGTCAAGAAGACCAAGGA
GCAGCAGAAGAAGGAATTGCTTGACATGGAACTGGAGCTAATCGCCCAGC
AACAGGAGGGCAACGACACTACAGCCATTCAGAAGCGATTGGAGGAGTTA
CAGCGCAATCTTGGTGTTGGCTCAGCTGCGAATAACAAGTCTACCCACTA
TGCACCTGCTTCCGGGGCACCCGGTGGCGGTGCAGGACGCAAGCGTCCGA
ATCTGCCGGAGGGACCCACTCGTGTCGACAGGCGGCCAAAGGCCATCGTG
GTCACTGGCTTTGCGGCCGAAGAGGCAGACTTTGTCCTCGGGCACTTTAA
GAACTTCGGCGAGATTTCTAAGCATGATGTAGACCGTGAGATTCCACAGT
TAATACTCTCATACGCAACCCGTCTCAACGCCGAACAGGCTGTGCTCCGG
GGCAAAATGTACAAAGACAAGCGCCTGCAGATCTCGTGGGCTCCCGTGGT
GACTCCCGCTCCAGCTCCAATGGCCGCCCCTGTTGAGAAGTCCGCTGCAC
CAGGTGACATGTCCGTTAGCCTAGAGAACCCCAAACAATTAATCCAGTCC
GTCAGTGAGAGCGAGAGTCTGTTAGGCAGCGACACGCTGCCGGAGCTGCG
CCTGGAAGATGAGGAGGAGGATGAGGAGTCCGAGGATCGCTCCTGGCGTC
GTTGAAAGCTTTCTAGACCAT
BS10617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-RB | 3189 | CG10084-PB | 1..3189 | 17..3205 | 15945 | 100 | Plus |
| swm-RA | 3189 | CG10084-PA | 1..3189 | 17..3205 | 15945 | 100 | Plus |
| swm-RD | 3192 | CG10084-PD | 1..3192 | 17..3205 | 15880 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-RB | 4114 | CG10084-RB | 331..3520 | 16..3205 | 15950 | 100 | Plus |
| swm-RA | 4005 | CG10084-RA | 365..3554 | 16..3205 | 15950 | 100 | Plus |
| swm-RD | 3974 | CG10084-RD | 331..3523 | 16..3205 | 15885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19494560..19496869 | 542..2851 | 11550 | 100 | Plus |
| 2L | 23513712 | 2L | 19494033..19494498 | 76..541 | 2330 | 100 | Plus |
| 2L | 23513712 | 2L | 19497157..19497384 | 2978..3205 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 19496959..19497089 | 2850..2980 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 19493898..19493957 | 16..75 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..2955 | 2477..2654 | 201 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6855..7020 | 2463..2629 | 201 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1032..1139 | 2462..2570 | 182 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6858 | 2478..2562 | 173 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6881 | 2490..2660 | 170 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6901 | 2476..2658 | 170 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6924 | 2345..2589 | 166 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6908 | 2478..2625 | 162 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1434..1581 | 2416..2570 | 153 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6833 | 2478..2570 | 151 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2537 | 2478..2638 | 148 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2405 | 2478..2566 | 147 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2589..2854 | 2477..2737 | 147 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2951 | 2481..2658 | 146 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2892 | 2504..2622 | 140 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2425 | 2450..2618 | 132 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2396 | 2423..2566 | 131 | 57.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1185 | 2481..2571 | 130 | 64.5 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4497..4588 | 2471..2559 | 128 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2664 | 2446..2528 | 127 | 65.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3309 | 2495..2528 | 125 | 85.3 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..723 | 2557..2503 | 122 | 69.1 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5640..5674 | 2496..2530 | 121 | 82.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7095..7129 | 2496..2530 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1511..1588 | 2452..2529 | 119 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6922 | 2478..2560 | 118 | 66.7 | Plus |
BS10617.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-27 15:38:37 Download gff for
BS10617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RB | 329..3516 | 17..3204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:11 Download gff for
BS10617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 366..3553 | 17..3204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:04 Download gff for
BS10617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 366..3553 | 17..3204 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:04 Download gff for
BS10617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19493899..19493957 | 17..75 | 100 | -> | Plus |
| 2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
| 2L | 19494560..19496869 | 542..2851 | 100 | -> | Plus |
| 2L | 19496961..19497089 | 2852..2980 | 100 | -> | Plus |
| 2L | 19497160..19497383 | 2981..3204 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:11 Download gff for
BS10617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19493899..19493957 | 17..75 | 100 | -> | Plus |
| arm_2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
| arm_2L | 19494560..19496869 | 542..2851 | 100 | -> | Plus |
| arm_2L | 19496961..19497089 | 2852..2980 | 100 | -> | Plus |
| arm_2L | 19497160..19497383 | 2981..3204 | 100 | | Plus |
BS10617.pep Sequence
Translation from 16 to 3204
> BS10617.pep
MILENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMI
EQLDVFLSEETTRFVERLFDAIASEEYLTVPAAPLITASSASTAELTVDQ
ELALVIDGPQDDIEAVLVADSPPPPPKDNVIKPDSNQVKLEQASQDAREA
EALAFISQEAGIAMHVPTDAKPAFDHKTKDSHNQQSASNYQHHHVRSASP
PGRSSGVSGSGGGGPGGAGLAAGYADKENQPRDSRRRRASLRSRSRSRSR
SNERAFRRSRSRDRRVNEREKTQRQFRNKSPPGSQTDNRHHGRRNFDRRR
IGGNADDRPRFGNNKSRRSHSRSMSPERNARRNQNSPDRVQTAQANLIPA
PVAPPAPVEHPASHPRQRCRDFDEKGYCVRGETCPWDHGVNPVVFEGINN
TSLMMSMREYNPDAPEIWARSGGPPPGAGQGPVPPPTQPGQTTINPFSGN
VRPTTLMSGSGPSPMGVPNPADYARNPGAPPQAAMMPFPFNPTAVTTPLQ
RQLIPIPVVDGAPTGGVAEVGKRRFELEDTVAIADVPTKRKVPINSRLGP
RVNPNMQQHNSSLELRKVPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDPE
AAIVTFSTHAEANVAYRSTEAVLNNRFIKVFWHNDSSGADVGQMNQMGGG
GGGGGRKNASQYHLHNVPAVPTPNADGAKISNANPLTEAGAGNIGTPATE
QANTAAPASMRLKLNTTTAGGSAGGAAGAGAPGSGRPLNPAANAASIRKK
QEEQQKAVHQLANGLRKRKQELLQSYMKQMKTALELVERMDQQDPQRAPT
LQTIKVLQMTIDKLRKEIKADQDQLQAQMQQQQQQQQPPVKKTKEQQKKE
LLDMELELIAQQQEGNDTTAIQKRLEELQRNLGVGSAANNKSTHYAPASG
APGGGAGRKRPNLPEGPTRVDRRPKAIVVTGFAAEEADFVLGHFKNFGEI
SKHDVDREIPQLILSYATRLNAEQAVLRGKMYKDKRLQISWAPVVTPAPA
PMAAPVEKSAAPGDMSVSLENPKQLIQSVSESESLLGSDTLPELRLEDEE
EDEESEDRSWRR*
BS10617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-PB | 1062 | CG10084-PB | 1..1062 | 1..1062 | 5498 | 100 | Plus |
| swm-PA | 1062 | CG10084-PA | 1..1062 | 1..1062 | 5498 | 100 | Plus |
| swm-PD | 1063 | CG10084-PD | 1..1063 | 1..1062 | 5486 | 99.9 | Plus |
| swm-PC | 1063 | CG10084-PC | 1..1063 | 1..1062 | 5486 | 99.9 | Plus |
