Clone BS10621 Report

Search the DGRC for BS10621

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptSym-RA
Protein status:BS10621.pep: full length peptide match
Sequenced Size:3530

Clone Sequence Records

BS10621.3prime Sequence

903 bp (817 high quality bases) assembled on 2006-04-19

> BS10621.3prime
ATGGTCTAGAAAGCTTCTAGTCCTCGCCAGGCGGCAGGGGCTGGTTAAGA
TCACTGCCTATGGGGGGAGGAACTGGTAGTGGTACTAGAGACGTCAGTAC
GGGCACTGTGGAAATGACACTAATTTCTGATGGATCCGGTGCCTCTTTTT
TAATATGCTCGGCACTGATGTAACCGCCGCTTTCGTCCGTCACGAACACA
TCAACTGATTTCCCGGAGATGATGTCCAGAACCTGCTGGGTTATACCACT
ACCATTCATTGGTTCATCCTGCATGCTCTCCGCGTATTCCGACAATGCTG
GCCTTAAATCGGGGCACTGCTGCAGTGCGTCCACCAGCTGGGCGGGAGGA
AGGTGCAGCAGGATCGGCATTGACTGCGGTTTCAGGCGCTGCACGGTCTT
TAAAAAGCCCTCCCAGATTACTTTTTGCCGCCAGACCTGCTTGATTATCA
GACGCTGCAACAAGTTCATTACAAAGTTTGCCAGACGCGGGTACAGAGTT
AGACTCTGAATTGTTGTGCGCATCATCAGAGTAGGCAGCGGAGTAACCTC
TACAAGCTGTTGCAGCACAGCCATAAGTACCTCCTGTGTGTACAGATCTC
TTTCAGCCAAACATAGGGATGTAGCCTTAACGATGGCTTTAATATCGCAG
ACACTCGTATCGATGGTGTGCAAAGCCACGAGAATATCAGTGGGGGTCAT
GGCCATCGTCTGATGCGCGAATTCGGCACCGATACCAAGCAATCGATTGA
AAACCTCCTTGACCACAGCGGGATTAAGTTTAATCAGCTTCGGCAGAACG
GAAATTAGCTCGGATCGGGTTAAGCCACTTAGCACGGGTATCATCACGCG
CACATCCTTGACCTTGTTCTGGTAGAGATCCCGAACCCGCCGAACCAATC
TTC

BS10621.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2097-PA 3498 CG2097-RA 2616..3498 899..17 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Sym-RA 3986 CG2097-RA 2964..3846 899..17 4415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5738594..5739306 187..899 3565 100 Plus
3R 32079331 3R 5738318..5738489 17..188 860 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:34:23 has no hits.

BS10621.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:10 Download gff for BS10621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2097-PA 2611..3498 17..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:57 Download gff for BS10621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2097-PA 2611..3498 17..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:59 Download gff for BS10621.3prime
Subject Subject Range Query Range Percent Splice Strand
Sym-RA 2959..3850 13..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:09 Download gff for BS10621.3prime
Subject Subject Range Query Range Percent Splice Strand
Sym-RA 2959..3850 13..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:09 Download gff for BS10621.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5738314..5738488 13..187 98 <- Plus
3R 5738595..5739311 188..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:59 Download gff for BS10621.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1564036..1564210 13..187 98 <- Plus
arm_3R 1564317..1565033 188..903 99   Plus

BS10621.5prime Sequence

881 bp (832 high quality bases) assembled on 2006-04-19

> BS10621.5prime
GAAGTTATCAGTCGACATGGATAGCATAATTGGACGCAGCCAGTTTGTCT
CGGAGACGGCCAATCTGTTCACAGACGAGAAGACAGCTACGGCAAGAGCT
AAGGTGGTCGATTGGTGCAATGAGCTGGTCATCGCATCGCCTTCGACAAA
GTGCGAACTGCTGGCTAAGGTGCAGGAGACTGTGCTTGGATCGTGCGCGG
AGCTGGCCGAAGAATTCCTGGAGTCCGTGCTGTCTTTGGCCCACGACTCA
AACATGGAGGTTCGCAAGCAGGTAGTCGCCTTCGTAGAGCAAGTTTGTAA
AGTGAAGGTGGAGTTACTGCCCCATGTCATTAACGTCGTGTCTATGCTGC
TTAGGGATAACTCGGCTCAGGTAATCAAAAGAGTGATCCAAGCCTGCGGT
AGCATCTACAAGAATGGATTGCAGTACTTGTGCAGCCTCATGGAGCCCGG
CGACAGTGCGGAGCAGGCGTGGAACATCCTCAGCTTAATCAAGGCGCAAA
TACTGGACATGATCGACAATGAAAACGACGGCATACGTACAAATGCCATT
AAGTTCTTGGAGGGCGTCGTGGTTCTGCAGAGCTTTGCTGACGAGGACAG
TCTGAAACGAGATGGAGACTTCTCGCTGGCAGATGTCCCCGATCACTGCA
CACTATTCCGCCGTGAAAAGTTGCAAGAGGAGGGCAACAATATTTTAGAT
ATCTTGCTTCAGTTCCACGGAACAACGCATATTTCCTCAGTGAACTTGAT
TGCCTGCACAAGCAGCTTGTGTACAATTGCCAAAATGCGACCCATTTTCA
TGGGCGCCGTGGTGGAAGCCTTTAAGCAGCTGAATGGCCACCTGCCGCCC
ACCCTCACTGACTCGCAAGTAAGCTCCGTGC

BS10621.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2097-PA 3498 CG2097-RA 1..865 17..881 4275 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Sym-RA 3986 CG2097-RA 347..1213 15..881 4305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5741133..5741717 881..297 2895 99.7 Minus
3R 32079331 3R 5741778..5741973 297..102 980 100 Minus
3R 32079331 3R 5742040..5742130 105..15 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:37:49 has no hits.

BS10621.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:11 Download gff for BS10621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2097-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:58 Download gff for BS10621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2097-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:48:08 Download gff for BS10621.5prime
Subject Subject Range Query Range Percent Splice Strand
Sym-RA 344..1213 9..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:59 Download gff for BS10621.5prime
Subject Subject Range Query Range Percent Splice Strand
Sym-RA 344..1213 9..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:59 Download gff for BS10621.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5741133..5741716 298..881 99 <- Minus
3R 5741778..5741971 104..297 100 <- Minus
3R 5742042..5742133 9..103 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:48:08 Download gff for BS10621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1566855..1567438 298..881 99 <- Minus
arm_3R 1567500..1567693 104..297 100 <- Minus
arm_3R 1567764..1567855 9..103 95   Minus

BS10621.complete Sequence

3530 bp assembled on 2008-08-14

GenBank Submission: FJ636695

> BS10621.complete
GAAGTTATCAGTCGACATGGATAGCATAATTGGACGCAGCCAGTTTGTCT
CGGAGACGGCCAATCTGTTCACAGACGAGAAGACAGCTACGGCAAGAGCT
AAGGTGGTCGATTGGTGCAATGAGCTGGTCATCGCATCGCCTTCGACAAA
GTGCGAACTGCTGGCTAAGGTGCAGGAGACTGTGCTTGGATCGTGCGCGG
AGCTGGCCGAAGAATTCCTGGAGTCCGTGCTGTCTTTGGCCCACGACTCA
AACATGGAGGTTCGCAAGCAGGTAGTCGCCTTCGTAGAGCAAGTTTGTAA
AGTGAAGGTGGAGTTACTGCCCCATGTCATTAACGTCGTGTCTATGCTGC
TTAGGGATAACTCGGCTCAGGTAATCAAAAGAGTGATCCAAGCCTGCGGT
AGCATCTACAAGAATGGATTGCAGTACTTGTGCAGCCTCATGGAGCCCGG
CGACAGTGCGGAGCAGGCGTGGAACATCCTCAGCTTAATCAAGGCGCAAA
TACTGGACATGATCGACAATGAAAACGACGGCATACGTACAAATGCCATT
AAGTTCTTGGAGGGCGTCGTGGTTCTGCAGAGCTTTGCTGACGAGGACAG
TCTGAAACGAGATGGAGACTTCTCGCTGGCAGATGTCCCCGATCACTGCA
CACTATTCCGCCGTGAAAAGTTGCAAGAGGAGGGCAACAATATTTTAGAT
ATCTTGCTTCAGTTCCACGGAACAACGCATATTTCCTCAGTGAACTTGAT
TGCCTGCACAAGCAGCTTGTGTACAATTGCCAAAATGCGACCCATTTTCA
TGGGCGCCGTGGTGGAAGCCTTTAAGCAGCTGAATGCCAACCTGCCGCCC
ACCCTCACTGACTCGCAAGTAAGCTCCGTGCGTAAGAGCCTTAAGATGCA
GTTGCAGACATTGCTGAAGAACCGCGGTGCCTTTGAGTTTGCAAGCACTA
TCCGAGGAATGTTAGTTGATCTGGGGTCCTCCACAAATGAGATCCAGAAG
CTTATTCCCAAAATGGACAAACAGGAAATGGCTCGTAGACAAAAACGCAT
CCTCGAAAATGCTGCGCAAAGTCTTGCAAAGCGTGCGCGCTTGGCCTGTG
AGCAGCAGGATCAGCAGCAGCGAGAAATGGAGCTAGACACTGAGGAATTG
GAACGACAGAAACAGAAGTCTACTCGAGTTAACGAAAAGTTTCTGGCAGA
GCATTTCCGTAATCCTGAAACTGTTGTGACCCTGGTGCTGGAGTTCCTGC
CCAGTCTGCCCACTGAGGTGCCACAAAAGTTCCTTCAGGAATATACACCC
ATTCGCGAAATGTCTATTCAGCAGCAGGTAACCAATATCTCCAGATTTTT
TGGCGAACAACTATCTGAAAAGCGCCTAGGCCCAGGTGCCGCAACCTTCA
GTCGAGAGCCGCCAATGCGGGTTAAGAAAGTGCAAGCGATTGAATCAACA
CTAACTGCAATGGAAGTGGACGAGGATGCTGTTCAAAAACTGAGTGAGGA
AGAGTTTCAGCGTAAGGAGGAAGCAACCAAGAAGCTGCGCGAGACCATGG
AGCGCGCCAAGGGTGAGCAGACTGTTATTGAAAAGATGAAGGAGCGCGCC
AAGACGCTGAAGCTGCAGGAGATCACCAAGCCTCTGCCACGCAACTTAAA
AGAGAAGTTCCTAACTGATGCAGTGCGTCGCATCCTCAACTCGGAGCGGC
AATGCATTAAGGGAGGAGTGTCATCAAAGCGCCGTAAGCTGGTCACCGTG
ATTGCTGCCACCTTTCCCGATAACGTACGTTACGGCATCATGGAGTTCAT
CCTGGAGGATATAAAACAGCGTATCGATTTGGCATTTTCCTGGCTCTTTG
AGGAGTACTCTCTGCTGCAAGGATTTACAAGGCACACTTATGTTAAGACA
GAGAACAGACCCGATCACGCCTACAACGAGTTGCTGAATAAGCTTATCTT
CGGCATTGGAGAGCGTTGCGATCACAAGGATAAGATTATTTTGATTCGTC
GAGTATATCTAGAAGCACCCATTCTTCCGGAAGTCTCAATTGGACATCTA
GTTCAATTAAGCCTGGACGACGAGTTCTCCCAGCACGGCCTGGAGCTAAT
CAAGGACCTTGCAGTGCTTAGGCCGCCGCGAAAGAATCGTTTCGTTAGAG
TGTTGCTCAACTTTTCTGTGCATGAGCGACTGGATCTGCGGGATCTGGCA
CAGGCCCACCTGGTCAGTCTGTACCATGTACACAAAATACTACCGGCTCG
AATAGACGAATTCGCTCTGGAGTGGCTTAAATTTATCGAACAGGAATCTC
CGCCGGCAGCTGTTTTCTCGCAGGACTTTGGTCGACCAACCGAGGAGCCT
GATTGGCGGGAAGACACTACCAAGGTGTGCTTTGGTTTGGCCTTTACCCT
GCTGCCCTATAAACCGGAAGTTTACTTACAGCAAATTTGTCAAGTGTTTG
TTTCTACATCTGCCGAACTGAAACGCACGATCTTGCGCAGTCTAGATATT
CCCATAAAAAAGATGGGTGTAGAAAGCCCGACGTTGCTGCAACTAATCGA
GGATTGTCCTAAGGGTATGGAGACCTTAGTGATCCGTATAATTTACATAC
TGACAGAGCGAGTGCCATCCCCCCATGAAGAATTGGTTCGGCGGGTTCGG
GATCTCTACCAGAACAAGGTCAAGGATGTGCGCGTGATGATACCCGTGCT
AAGTGGCTTAACCCGATCCGAGCTAATTTCCGTTCTGCCGAAGCTGATTA
AACTTAATCCCGCTGTGGTCAAGGAGGTTTTCAATCGATTGCTTGGTATC
GGTGCCGAATTCGCGCATCAGACGATGGCCATGACCCCCACTGATATTCT
CGTGGCTTTGCACACCATCGATACGAGTGTCTGCGATATTAAAGCCATCG
TTAAGGCTACATCCCTATGTTTGGCTGAAAGAGATCTGTACACACAGGAG
GTACTTATGGCTGTGCTGCAACAGCTTGTAGAGGTTACTCCGCTGCCTAC
TCTGATGATGCGCACAACAATTCAGAGTCTAACTCTGTACCCGCGTCTGG
CAAACTTTGTAATGAACTTGTTGCAGCGTCTGATAATCAAGCAGGTCTGG
CGGCAAAAAGTAATCTGGGAGGGCTTTTTAAAGACCGTGCAGCGCCTGAA
ACCGCAGTCAATGCCGATCCTGCTGCACCTTCCTCCCGCCCAGCTGGTGG
ACGCACTGCAGCAGTGCCCCGATTTAAGGCCAGCATTGTCGGAATACGCG
GAGAGCATGCAGGATGAACCAATGAATGGTAGTGGTATAACCCAGCAGGT
TCTGGACATCATCTCCGGGAAATCAGTTGATGTGTTCGTGACGGACGAAA
GCGGCGGTTACATCAGTGCCGAGCATATTAAAAAAGAGGCACCGGATCCA
TCAGAAATTAGTGTCATTTCCACAGTGCCCGTACTGACGTCTCTAGTACC
ACTACCAGTTCCTCCCCCCATAGGCAGTGATCTTAACCAGCCCCTGCCGC
CTGGCGAGGACTAGAAGCTTTCTAGACCAT

BS10621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sym-RA 3498 CG2097-PA 1..3498 17..3514 17490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Sym-RA 3986 CG2097-RA 347..3846 15..3514 17500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5739594..5741717 2420..297 10620 100 Minus
3R 32079331 3R 5738594..5739519 3344..2419 4630 100 Minus
3R 32079331 3R 5741778..5741973 297..102 980 100 Minus
3R 32079331 3R 5738318..5738489 3514..3343 860 100 Minus
3R 32079331 3R 5742040..5742130 105..15 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:58:30 has no hits.

BS10621.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:03 Download gff for BS10621.complete
Subject Subject Range Query Range Percent Splice Strand
CG2097-RA 314..3820 9..3518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:24 Download gff for BS10621.complete
Subject Subject Range Query Range Percent Splice Strand
Sym-RA 349..3846 17..3514 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:07 Download gff for BS10621.complete
Subject Subject Range Query Range Percent Splice Strand
CG2097-RA 319..3816 17..3514 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:50 Download gff for BS10621.complete
Subject Subject Range Query Range Percent Splice Strand
Sym-RA 349..3846 17..3514 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:50 Download gff for BS10621.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5738318..5738488 3344..3514 100 <- Minus
3R 5738595..5739517 2421..3343 100 <- Minus
3R 5739594..5741716 298..2420 100 <- Minus
3R 5741778..5741971 104..297 100 <- Minus
3R 5742042..5742128 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:24 Download gff for BS10621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1564040..1564210 3344..3514 100 <- Minus
arm_3R 1565316..1567438 298..2420 100 <- Minus
arm_3R 1564317..1565239 2421..3343 100 <- Minus
arm_3R 1567500..1567693 104..297 100 <- Minus
arm_3R 1567764..1567850 17..103 100   Minus

BS10621.pep Sequence

Translation from 16 to 3513

> BS10621.pep
MDSIIGRSQFVSETANLFTDEKTATARAKVVDWCNELVIASPSTKCELLA
KVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL
LPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQ
AWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDG
DFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSS
LCTIAKMRPIFMGAVVEAFKQLNANLPPTLTDSQVSSVRKSLKMQLQTLL
KNRGAFEFASTIRGMLVDLGSSTNEIQKLIPKMDKQEMARRQKRILENAA
QSLAKRARLACEQQDQQQREMELDTEELERQKQKSTRVNEKFLAEHFRNP
ETVVTLVLEFLPSLPTEVPQKFLQEYTPIREMSIQQQVTNISRFFGEQLS
EKRLGPGAATFSREPPMRVKKVQAIESTLTAMEVDEDAVQKLSEEEFQRK
EEATKKLRETMERAKGEQTVIEKMKERAKTLKLQEITKPLPRNLKEKFLT
DAVRRILNSERQCIKGGVSSKRRKLVTVIAATFPDNVRYGIMEFILEDIK
QRIDLAFSWLFEEYSLLQGFTRHTYVKTENRPDHAYNELLNKLIFGIGER
CDHKDKIILIRRVYLEAPILPEVSIGHLVQLSLDDEFSQHGLELIKDLAV
LRPPRKNRFVRVLLNFSVHERLDLRDLAQAHLVSLYHVHKILPARIDEFA
LEWLKFIEQESPPAAVFSQDFGRPTEEPDWREDTTKVCFGLAFTLLPYKP
EVYLQQICQVFVSTSAELKRTILRSLDIPIKKMGVESPTLLQLIEDCPKG
METLVIRIIYILTERVPSPHEELVRRVRDLYQNKVKDVRVMIPVLSGLTR
SELISVLPKLIKLNPAVVKEVFNRLLGIGAEFAHQTMAMTPTDILVALHT
IDTSVCDIKAIVKATSLCLAERDLYTQEVLMAVLQQLVEVTPLPTLMMRT
TIQSLTLYPRLANFVMNLLQRLIIKQVWRQKVIWEGFLKTVQRLKPQSMP
ILLHLPPAQLVDALQQCPDLRPALSEYAESMQDEPMNGSGITQQVLDIIS
GKSVDVFVTDESGGYISAEHIKKEAPDPSEISVISTVPVLTSLVPLPVPP
PIGSDLNQPLPPGED*

BS10621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sym-PA 1165 CG2097-PA 1..1165 1..1165 5871 100 Plus