Clone BS10622 Report

Search the DGRC for BS10622

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCycG-RA
Protein status:BS10622.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10622.3prime Sequence

900 bp (830 high quality bases) assembled on 2006-04-19

> BS10622.3prime
ATGGTCTAGAAAGCTTCTAACATTGTTCGAAAATTGGAATTATGGGTGAA
GTGGGCCAGTCCTCCTCCTCCTCGGAGCTAATACTCTCGGTTCTAGAACG
CAGGCCATCGTCGAGGGCGTTGGGGATGCCTTCCTCAATGGTGGGCAGGT
CGGAGGAGAAGCGGTTGATCGGGCGCAAGACGCGCAGCGTGCGACTGGAC
AGCTTCCAGACAAGCCGCTGCTTGTAGGGCGCCTTGTTCTGCCCGTTGTA
ATGGGACAGAATACCCGAAACGATGCTGAAGCCGCAGGTGAAAACGCGAT
CAGGAATCCTCATGTACTGCTGCAGGAAGAGAATGTACTCGAAGACGTGC
TTCAGCTCCGGACTGCCGCGGGTGTACGACTCCTTGATGTGGAAGTCCAG
GTGCAGGCAGATGAGCACCAGCGCCAGCGTCGAGGGCGTGATCACCGTGG
TCTTCACGTCGCACATCAGGATCTCCAGGCGGTTCTCCAGTTCCTCCAGC
TTGATGAGCTGCTGGTAGAACTTGAAAAAGTCGCCGCCGATCTCCTTCGC
CAAGTTGCGGAAGAGGGCGTAGTAGATGCGCAGGTAGCTCACAGAAGTGA
TCGGTGCATGTCCCATCTGGACGCCCAGCTTGTTGGCAATCACGCCGGCC
ATGCGTTCCAGATCACCAGCGGTACAACCACACTGAGATATTGTAACCAG
ATCCTCGGCGGGAATGGGTTTCAAGTCCAGCTGCTTGATGGCCAAGTGGA
ACGAGGCCACGCTCATGCAGGCCATGTGCTTCGGCTTGACGGCCATGCGA
TCCAGGAAGCGGTCCACCAGGCTCATGGCCGAGAACAGGACGTCGGAGGG
CAGCTCGTACCACATCTTCAGGCAGCGCAGCACGTAAGCGGATCCATCTC

BS10622.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11525-PD 1701 CycG-RD 818..1701 900..17 4395 99.8 Minus
CG11525-PA 1701 CycG-RA 818..1701 900..17 4395 99.8 Minus
CG11525-PB 1701 CycG-RB 818..1701 900..17 4395 99.8 Minus
CG11525-PC 1701 CycG-RC 818..1701 900..17 4395 99.8 Minus
CG11525-PE 849 CycG-RE 1..849 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
CycG-RF 4450 CG11525-RF 936..1819 900..17 4405 99.9 Minus
CycG-RC 2687 CG11525-RC 1334..2217 900..17 4405 99.9 Minus
CycG-RB 3132 CG11525-RB 1779..2662 900..17 4405 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31600674..31601051 308..685 1890 100 Plus
3R 32079331 3R 31600389..31600604 93..308 1080 100 Plus
3R 32079331 3R 31601112..31601329 683..900 1075 99.5 Plus
3R 32079331 3R 31599273..31599354 17..98 395 98.8 Plus
Blast to na_te.dros performed on 2015-02-01 10:49:37 has no hits.

BS10622.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:12 Download gff for BS10622.3prime
Subject Subject Range Query Range Percent Splice Strand
CycG-PD 818..1701 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:07:59 Download gff for BS10622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11525-PC 818..1701 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:31:49 Download gff for BS10622.3prime
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 1785..2668 17..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:38 Download gff for BS10622.3prime
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 1779..2662 17..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:38 Download gff for BS10622.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31599273..31599348 17..92 100 <- Plus
3R 31600389..31600603 93..307 100 <- Plus
3R 31600674..31601048 308..682 100 <- Plus
3R 31601112..31601329 683..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:31:49 Download gff for BS10622.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27424995..27425070 17..92 100 <- Plus
arm_3R 27426111..27426325 93..307 100 <- Plus
arm_3R 27426396..27426770 308..682 100 <- Plus
arm_3R 27426834..27427051 683..900 99   Plus

BS10622.5prime Sequence

945 bp (831 high quality bases) assembled on 2006-04-19

> BS10622.5prime
GAAGTTATCAGTCGACATGTCTGTCCCTGTACGCTACTCCTCTGCTGCCG
CCGAATACGCCGCCGAAGTTGATTGTGAGTTGGAGAGCACTCTGCAACAG
CAGCAACAGTTGCACTTGCAACAGCAATACGAGCAATACCAGCACTACCA
GTACCAACGGGAGCAGGATATCGCCTACTATTGCCAGTTGCAGGCGGCGC
GGCAGCAGGAGCAGTTGATGCAGCAGAGGACATCGATGTCGTCGTCGGTT
ATGCCAGGCCTAGCCTTGCCCCAGGATCACCAGGACCACCCAGCCGCCCT
TTTGAACGGACCCCACAACAACAACATCGGACTCGCCATGGACGCCCACA
GCATCAACGCCATTCTGGTCGACGACGAGCAGCCCTCGACTTCGGCCCAG
GCTGCCGCCGCTGCTGCCGCATCCGCGGGTGGATCTGCTGGTGCGGGATC
GGGATCGGGATTGGGTGGTGCTATCGGTGGGGGCAAGCTGGCCAACGGCA
TTAACCGCAATGCAGAGATGCCAACTGATTGGATGAGGATTGCGGACGAG
GGCCGGTATGGGACACCGGGTGCTGCTGGCTTGGAATATCAGAAGTACGA
ACAACAACAACAACTGGAGGATCTGGCGGAGTCCGAGGCAGGAGCCGTCG
GTGGAGCCAGCAACAACAACGGCGAATCGTCGTCGTCCTTGAAAAAGCTA
GAGGATCAGCTGCACGCCCTCACCTCGGACGAGTTGTACGAAACCCTCAA
GGAGTACGACGTCCTGCAGGACAAGTTCCACACGGTGCTGCTGTTGCCCA
AGGAATCAAGGCGTGAGGTTACTGCCGGAGGACGAGATGGATCCGCCTAC
GTGCTGCGCTGCCTGAAGATGTGGTACGAGCTGCCCTCCGACGTCCTGTT
CTCGGCCATGAGCCTGGTGGACCGCTTCCTGGATCGCATGGCCGT

BS10622.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11525-PD 1701 CycG-RD 1..929 17..945 4645 100 Plus
CG11525-PA 1701 CycG-RA 1..929 17..945 4645 100 Plus
CG11525-PB 1701 CycG-RB 1..929 17..945 4645 100 Plus
CG11525-PC 1701 CycG-RC 1..929 17..945 4645 100 Plus
CG11525-PE 849 CycG-RE 1..77 869..945 385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CycG-RF 4450 CG11525-RF 119..1047 17..945 4645 100 Plus
CycG-RC 2687 CG11525-RC 517..1445 17..945 4645 100 Plus
CycG-RB 3132 CG11525-RB 962..1890 17..945 4645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31601416..31602210 811..17 3975 100 Minus
3R 32079331 3R 31601218..31601352 945..811 675 100 Minus
Blast to na_te.dros performed 2015-02-10 04:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..7006 95..292 215 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6861 95..225 188 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6910 95..226 173 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2496 84..234 170 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6840 96..225 161 62.3 Plus
roo 9092 roo DM_ROO 9092bp 1079..1146 95..168 158 73 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6889 95..226 153 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2380 94..168 150 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6867 95..168 147 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2392 86..165 145 66.2 Plus
roo 9092 roo DM_ROO 9092bp 1081..1162 84..166 142 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1585 95..144 133 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6903 96..171 130 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2853 92..158 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6842..6915 95..168 127 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2870 95..160 114 63.6 Plus

BS10622.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:14 Download gff for BS10622.5prime
Subject Subject Range Query Range Percent Splice Strand
CycG-PD 1..929 17..945 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:01 Download gff for BS10622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11525-PC 1..929 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:30 Download gff for BS10622.5prime
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 963..1896 8..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:26:10 Download gff for BS10622.5prime
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 957..1890 8..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:26:10 Download gff for BS10622.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31601218..31601351 812..945 100 <- Minus
3R 31601416..31602215 8..811 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:30 Download gff for BS10622.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27426940..27427073 812..945 100 <- Minus
arm_3R 27427138..27427937 8..811 99   Minus

BS10622.complete Sequence

1733 bp assembled on 2006-11-01

GenBank Submission: FJ636696

> BS10622.complete
GAAGTTATCAGTCGACATGTCTGTCCCTGTACGCTACTCCTCTGCTGCCG
CCGAATACGCCGCCGAAGTTGATTGTGAGTTGGAGAGCACTCTGCAACAG
CAGCAACAGTTGCACTTGCAACAGCAATACGAGCAATACCAGCACTACCA
GTACCAACGGGAGCAGGATATCGCCTACTATTGCCAGTTGCAGGCGGCGC
GGCAGCAGGAGCAGTTGATGCAGCAGAGGACATCGATGTCGTCGTCGGTT
ATGCCAGGCCTAGCCTTGCCCCAGGATCACCAGGACCACCCAGCCGCCCT
TTTGAACGGACCCCACAACAACAACATCGGACTCGCCATGGACGCCCACA
GCATCAACGCCATTCTGGTCGACGACGAGCAGCCCTCGACTTCGGCCCAG
GCTGCCGCCGCTGCTGCCGCATCCGCGGGTGGATCTGCTGGTGCGGGATC
GGGATCGGGATTGGGTGGTGCTATCGGTGGGGGCAAGCTGGCCAACGGCA
TTAACCGCAATGCAGAGATGCCAACTGATTGGATGAGGATTGCGGACGAG
GGCCGGTATGGGACACCGGGTGCTGCTGGCTTGGAATATCAGAAGTACGA
ACAACAACAACAACTGGAGGATCTGGCGGAGTCCGAGGCAGGAGCCGTCG
GTGGAGCCAGCAACAACAACGGCGAATCGTCGTCGTCCTTGAAAAAGCTA
GAGGATCAGCTGCACGCCCTCACCTCGGACGAGTTGTACGAAACCCTCAA
GGAGTACGACGTCCTGCAGGACAAGTTCCACACGGTGCTGCTGTTGCCCA
AGGAATCAAGGCGTGAGGTTACTGCCGGAGGACGAGATGGATCCGCCTAC
GTGCTGCGCTGCCTGAAGATGTGGTACGAGCTGCCCTCCGACGTCCTGTT
CTCGGCCATGAGCCTGGTGGACCGCTTCCTGGATCGCATGGCCGTCAAGC
CGAAGCACATGGCCTGCATGAGCGTGGCCTCGTTCCACTTGGCCATCAAG
CAGCTGGACTTGAAACCCATTCCCGCCGAGGATCTGGTTACAATATCTCA
GTGTGGTTGTACCGCTGGTGATCTGGAACGCATGGCCGGCGTGATTGCCA
ACAAGCTGGGCGTCCAGATGGGACATGCACCGATCACTTCTGTGAGCTAC
CTGCGCATCTACTACGCCCTCTTCCGCAACTTGGCGAAGGAGATCGGCGG
CGACTTTTTCAAGTTCTACCAGCAGCTCATCAAGCTGGAGGAACTGGAGA
ACCGCCTGGAGATCCTGATGTGCGACGTGAAGACCACGGTGATCACGCCC
TCGACGCTGGCGCTGGTGCTCATCTGCCTGCACCTGGACTTCCACATCAA
GGAGTCGTACACCCGCGGCAGTCCGGAGCTGAAGCACGTCTTCGAGTACA
TTCTCTTCCTGCAGCAGTACATGAGGATTCCTGATCGCGTTTTCACCTGC
GGCTTCAGCATCGTTTCGGGTATTCTGTCCCATTACAACGGGCAGAACAA
GGCGCCCTACAAGCAGCGGCTTGTCTGGAAGCTGTCCAGTCGCACGCTGC
GCGTCTTGCGCCCGATCAACCGCTTCTCCTCCGACCTGCCCACCATTGAG
GAAGGCATCCCCAACGCCCTCGACGATGGCCTGCGTTCTAGAACCGAGAG
TATTAGCTCCGAGGAGGAGGAGGACTGGCCCACTTCACCCATAATTCCAA
TTTTCGAACAATGTTAGAAGCTTTCTAGACCAT

BS10622.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
CycG-RF 1701 CG11525-PF 1..1701 17..1717 8505 100 Plus
CycG-RC 1701 CG11525-PC 1..1701 17..1717 8505 100 Plus
CycG-RB 1701 CG11525-PB 1..1701 17..1717 8505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CycG-RF 4450 CG11525-RF 119..1819 17..1717 8505 100 Plus
CycG-RC 2687 CG11525-RC 517..2217 17..1717 8505 100 Plus
CycG-RB 3132 CG11525-RB 962..2662 17..1717 8505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31601416..31602210 811..17 3975 100 Minus
3R 32079331 3R 31600674..31601051 1426..1049 1890 100 Minus
3R 32079331 3R 31601112..31601352 1051..811 1205 100 Minus
3R 32079331 3R 31600389..31600604 1641..1426 1080 100 Minus
3R 32079331 3R 31599273..31599354 1717..1636 395 98.8 Minus
Blast to na_te.dros performed 2014-11-27 14:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..7006 95..292 215 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6861 95..225 188 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6910 95..226 173 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2496 84..234 170 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6840 96..225 161 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6889 95..226 153 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2380 94..168 150 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6867 95..168 147 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2392 86..165 145 66.2 Plus
roo 9092 roo DM_ROO 9092bp 1081..1162 84..166 142 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1585 95..144 133 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6903 96..171 130 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2853 92..158 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6842..6915 95..168 127 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2870 95..160 114 63.6 Plus

BS10622.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:16 Download gff for BS10622.complete
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 1..1701 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:53 Download gff for BS10622.complete
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 963..2668 8..1717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:39 Download gff for BS10622.complete
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 968..2668 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:16 Download gff for BS10622.complete
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 963..2668 8..1717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:32 Download gff for BS10622.complete
Subject Subject Range Query Range Percent Splice Strand
CycG-RB 962..2662 17..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:32 Download gff for BS10622.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31600674..31601048 1052..1426 100 <- Minus
3R 31601112..31601351 812..1051 100 <- Minus
3R 31599273..31599348 1642..1717 100 <- Minus
3R 31600389..31600603 1427..1641 100 <- Minus
3R 31601416..31602210 17..811 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:39 Download gff for BS10622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27424995..27425070 1642..1717 100 <- Minus
arm_3R 27426111..27426325 1427..1641 100 <- Minus
arm_3R 27426396..27426770 1052..1426 100 <- Minus
arm_3R 27426834..27427073 812..1051 100 <- Minus
arm_3R 27427138..27427932 17..811 100   Minus

BS10622.pep Sequence

Translation from 16 to 1716

> BS10622.pep
MSVPVRYSSAAAEYAAEVDCELESTLQQQQQLHLQQQYEQYQHYQYQREQ
DIAYYCQLQAARQQEQLMQQRTSMSSSVMPGLALPQDHQDHPAALLNGPH
NNNIGLAMDAHSINAILVDDEQPSTSAQAAAAAAASAGGSAGAGSGSGLG
GAIGGGKLANGINRNAEMPTDWMRIADEGRYGTPGAAGLEYQKYEQQQQL
EDLAESEAGAVGGASNNNGESSSSLKKLEDQLHALTSDELYETLKEYDVL
QDKFHTVLLLPKESRREVTAGGRDGSAYVLRCLKMWYELPSDVLFSAMSL
VDRFLDRMAVKPKHMACMSVASFHLAIKQLDLKPIPAEDLVTISQCGCTA
GDLERMAGVIANKLGVQMGHAPITSVSYLRIYYALFRNLAKEIGGDFFKF
YQQLIKLEELENRLEILMCDVKTTVITPSTLALVLICLHLDFHIKESYTR
GSPELKHVFEYILFLQQYMRIPDRVFTCGFSIVSGILSHYNGQNKAPYKQ
RLVWKLSSRTLRVLRPINRFSSDLPTIEEGIPNALDDGLRSRTESISSEE
EEDWPTSPIIPIFEQC*

BS10622.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
CycG-PF 566 CG11525-PF 1..566 1..566 2917 100 Plus
CycG-PC 566 CG11525-PC 1..566 1..566 2917 100 Plus
CycG-PB 566 CG11525-PB 1..566 1..566 2917 100 Plus
CycG-PA 566 CG11525-PA 1..566 1..566 2917 100 Plus
CycG-PD 566 CG11525-PD 1..566 1..566 2917 100 Plus