Clone BS10626 Report

Search the DGRC for BS10626

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG12054-RA
Protein status:BS10626.pep: full length peptide match
Sequenced Size:1919

Clone Sequence Records

BS10626.complete Sequence

1919 bp assembled on 2009-12-07

GenBank Submission: KX801656

> BS10626.complete
GAAGTTATCAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACA
ATGGCTGCGGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATC
GAGGACACCCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCA
GGCCCAGCCTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCG
AGGAGAACCGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCC
CCACCGACCACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAA
TGTGGAGCTCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGT
CCTCGTCCAACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGAC
GAAATGGTGGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGA
GGAGTTTAGCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTG
GTGGAAGCAATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTT
CCGGGATGCAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTC
GAAGAACGGTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTC
ACTGCGGCAAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTG
CACACACACAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAA
TGCGTTGGCCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCA
GCAACACCTCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAAC
TCGCCGTCTCAGTCGCTGGGCTCGTTGAGTCCGTCGAGCATCAGCAACAT
GTCGAGCAGCGCCAGCAGTTGCCATGGAGGCAGCGGCAGTCTGTCGAACG
GGAATAATGGCAACAATGGGAGCACTACTAGCAACACTGCCATTCTCACT
AGCAACGGGAATGTCCTGCAGCAGCTCAGTGCCGGGAATGTGGTCACCCT
GACCAATCTTCCCACGCAACAGCATCAGCAGCAACAGCCGCAGCCGCAAC
AGCAGCAGCAGCAGCAACTCCATCAAAACACTGCAACAGGTAACAGCAAC
AACAACAATTTAATGCGCAGCACACTCGGTTTAGTATCCATTAAAACCAA
CAACACGCCGACAGCCAAGTCGGTTAGCAATCTGATGGCTGCTAATGCCA
CAGCCAGCAAGATACTCAAGCTGGCCACCAATGTGGCCAATGGTGGCTCC
TCTATGGACATTGTGCAGCAGCAACAGCAGCACAACAAGACCACAACTAC
TGGCCAAACAGTGCTCAATGGCAGCAAACCGCTGCCCAATTTGGTCAACT
TGGGCATTCTCACGCCGGCCACCTCACCCACCAAAAACACCCAAACGCTG
ACCTTCACCACCACGAATGGTAGTACCCAGCAGCAGCAGGCTCTAGTGGC
CTCGTTGTCCAAGAAGACCAACATACTGCTACTACAGGAGCCAACCCAGT
TGGTGCAGCAGGTACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAG
CAACTGCAGCAGCAGGTGCAGCAGCAACACCACGTTCTGCCCATCAGTCC
CACGAGCAGCGTCAGCGGGAACAGCAGCAAGAGCAGCTCGCCCACGCCGC
AGCAACAGCAACAGCAGCTGCTGAAGAAGGGCAAACTGGAACTGATAGAG
CCCATGGAGACGGATGAGGGTCAGAGCGACGGCATTTCGGAGAGCGTGGC
TGCAGCGATTGCCAGCATCACAGATTGCAAGGAGGACATAGGAGGAGCAA
CAGTGGCGGGCATTGAAGTTGTAGGCGCTGGCGCCGTCAACGAAGAGACG
TAGAAGCTTTCTAGACCAT

BS10626.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RA 1887 CG12054-PA 1..1887 17..1903 9435 100 Plus
CG12054-RF 1551 CG12054-PF 1..1123 17..1139 5615 100 Plus
CG12054-RE 1551 CG12054-PE 1..1123 17..1139 5615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RA 3130 CG12054-RA 595..2481 17..1903 9435 100 Plus
CG12054-RF 2408 CG12054-RF 595..1717 17..1139 5615 100 Plus
CG12054-RE 4280 CG12054-RE 595..1717 17..1139 5615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31226565..31227842 626..1903 6390 100 Plus
3R 32079331 3R 31225811..31226077 115..381 1335 100 Plus
3R 32079331 3R 31226364..31226503 488..627 700 100 Plus
3R 32079331 3R 31226139..31226250 379..490 560 100 Plus
3R 32079331 3R 31221366..31221465 17..116 500 100 Plus
Blast to na_te.dros performed 2014-11-28 02:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6944 1510..1684 264 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2631 1429..1735 250 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..7018 1510..1734 242 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..7064 1478..1738 241 59.2 Plus

BS10626.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:38 Download gff for BS10626.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 593..2479 17..1903 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:28 Download gff for BS10626.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..2481 17..1903 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:04 Download gff for BS10626.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 593..2479 17..1903 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:44 Download gff for BS10626.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..2481 17..1903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:44 Download gff for BS10626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31221366..31221465 17..116 100 -> Plus
3R 31225813..31226076 117..380 100 -> Plus
3R 31226141..31226249 381..489 100 -> Plus
3R 31226366..31226503 490..627 100 -> Plus
3R 31226567..31227842 628..1903 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:28 Download gff for BS10626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27047088..27047187 17..116 100 -> Plus
arm_3R 27051535..27051798 117..380 100 -> Plus
arm_3R 27051863..27051971 381..489 100 -> Plus
arm_3R 27052088..27052225 490..627 100 -> Plus
arm_3R 27052289..27053564 628..1903 100   Plus

BS10626.3prime Sequence

852 bp (829 high quality bases) assembled on 2006-04-19

> BS10626.3prime
ATGGTCTAGAAAGCTTCTACGTCTCTTCGTTGACGGCGCCAGCGCCTACA
ACTTCAATGCCCGCCACTGTTGCTCCTCCTATGTCCTCCTTGCAATCTGT
GATGCTGGCAATCGCTGCAGCCACGCTCTCCGAAATGCCGTCGCTCTGAC
CCTCATCCGTCTCCATGGGCTCTATCAGTTCCAGTTTGCCCTTCTTCAGC
AGCTGCTGTTGCTGTTGCTGCGGCGTGGGCGAGCTGCTCTTGCTGCTGTT
CCCGCTGACGCTGCTCGTGGGACTGATGGGCAGAACGTGGTGTTGCTGCT
GCACCTGCTGCTGCAGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGC
TGCTGTACCTGCTGCACCAACTGGGTTGGCTCCTGTAGTAGCAGTATGTT
GGTCTTCTTGGACAACGAGGCCACTAGAGCCTGCTGCTGCTGGGTACTAC
CATTCGTGGTGGTGAAGGTCAGCGTTTGGGTGTTTTTGGTGGGTGAGGTG
GCCGGCGTGAGAATGCCCAAGTTGACCAAATTGGGCAGCGGTTTGCTGCC
ATTGAGCACTGTTTGGCCAGTAGTTGTGGTCTTGTTGTGCTGCTGTTGCT
GCTGCACAATGTCCATAGAGGAGCCACCATTGGCCACATTGGTGGCCAGC
TTGAGTATCTTGCTGGCTGTGGCATTAGCAGCCATCAGATTGCTAACCGA
CTTGGCTGTCGGCGTGTTGTTGGTTTTAATGGATACTAAACCGAGTGTGC
TGCGCATTAAATTGTTGTTGTTGCTGTTACCTGTTGCAGTGTTTTGATGG
AGTTGCTGCTGCTGCTGCTGTTGCGGCTGCGGCTGTTGCTGCTGATGCTG
TT

BS10626.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PA 1887 CG12054-RA 1052..1887 852..17 4180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RA 3130 CG12054-RA 1646..2481 852..17 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31227007..31227842 852..17 4180 100 Minus
Blast to na_te.dros performed 2015-02-10 21:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6944 410..236 264 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2631 491..185 250 58.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..7018 410..186 242 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..7064 442..182 241 59.2 Minus

BS10626.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:19 Download gff for BS10626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 1052..1887 17..852 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:09 Download gff for BS10626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 1052..1887 17..852 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:08 Download gff for BS10626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 1646..2484 12..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:18 Download gff for BS10626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 1646..2484 12..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:18 Download gff for BS10626.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31227007..31227845 12..852 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:08 Download gff for BS10626.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27052729..27053567 12..852 99   Minus

BS10626.5prime Sequence

949 bp (872 high quality bases) assembled on 2006-04-19

> BS10626.5prime
GAAGTTATCAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACA
ATGGCTGCGGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATC
GAGGACACCCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCA
GGCCCAGCCTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCG
AGGAGAACCGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCC
CCACCGACCACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAA
TGTGGAGCTCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGT
CCTCGTCCAACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGAC
GAAATGGTGGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGA
GGAGTTTAGCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTG
GTGGAAGCAATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTT
CCGGGATGCAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTC
GAAGAACGGTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTC
ACTGCGGCAAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTG
CACACACACAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAA
TGCGTTGGCCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCA
GCAACACCTCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAAC
TCGCCGTCTCAGTCGCTGGGCTCGTTGAGTTCGTCGAGCATCAGCAACAT
GTCGAGCAGCGCCAGCAGTTGCCATGGAGGCAGCGGCAGTCTGTCGAAC

BS10626.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PA 1887 CG12054-RA 1..933 17..949 4640 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RF 2408 CG12054-RF 595..1527 17..949 4650 99.9 Plus
CG12054-RE 4280 CG12054-RE 595..1527 17..949 4650 99.9 Plus
CG12054-RA 3130 CG12054-RA 595..1527 17..949 4650 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31226565..31226888 626..949 1605 99.7 Plus
3R 32079331 3R 31225811..31226077 115..381 1335 100 Plus
3R 32079331 3R 31226364..31226503 488..627 700 100 Plus
3R 32079331 3R 31226139..31226250 379..490 560 100 Plus
3R 32079331 3R 31221366..31221465 17..116 500 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:36:56 has no hits.

BS10626.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:21 Download gff for BS10626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 1..933 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:11 Download gff for BS10626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-PA 1..933 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:47:13 Download gff for BS10626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..1527 17..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:57:42 Download gff for BS10626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..1527 17..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:57:42 Download gff for BS10626.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31221366..31221465 17..116 100 -> Plus
3R 31225813..31226076 117..380 100 -> Plus
3R 31226141..31226249 381..489 100 -> Plus
3R 31226366..31226503 490..627 100 -> Plus
3R 31226567..31226888 628..949 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:47:13 Download gff for BS10626.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27047088..27047187 17..116 100 -> Plus
arm_3R 27051535..27051798 117..380 100 -> Plus
arm_3R 27051863..27051971 381..489 100 -> Plus
arm_3R 27052088..27052225 490..627 100 -> Plus
arm_3R 27052289..27052610 628..949 99   Plus

BS10626.pep Sequence

Translation from 16 to 1902

> BS10626.pep
MAVFLINVCKYNGCGITFPSLSDLISHIEDTHIDYDPKVVEQKEQAQPAC
LPLSYVLRFITEENRKEAGSFLASNTTAPPTTNSGSNAAGHGNGNVELKR
KLAIKHHSYSMSSSNRSTTPTGSEMDEDEMVVTESEDSNDSWTTEEFSSE
FIMRYGSRHSGGGSNGTPGNEKPFACPVPGCKKRYKNVNGIKYHSKNGHK
KDGRVRKGYKCHCGKSYKTAQGLKNHALHTHNSQPDSVLNAQLANALAIG
DGASAATPVGSSNTSSNPNPPPIIQRSNSPSQSLGSLSPSSISNMSSSAS
SCHGGSGSLSNGNNGNNGSTTSNTAILTSNGNVLQQLSAGNVVTLTNLPT
QQHQQQQPQPQQQQQQQLHQNTATGNSNNNNLMRSTLGLVSIKTNNTPTA
KSVSNLMAANATASKILKLATNVANGGSSMDIVQQQQQHNKTTTTGQTVL
NGSKPLPNLVNLGILTPATSPTKNTQTLTFTTTNGSTQQQQALVASLSKK
TNILLLQEPTQLVQQVQQQQQQQQQQQQQLQQQVQQQHHVLPISPTSSVS
GNSSKSSSPTPQQQQQQLLKKGKLELIEPMETDEGQSDGISESVAAAIAS
ITDCKEDIGGATVAGIEVVGAGAVNEET*

BS10626.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PA 628 CG12054-PA 1..628 1..628 3223 100 Plus
CG12054-PF 516 CG12054-PF 1..418 1..413 1988 92.6 Plus
CG12054-PE 516 CG12054-PE 1..418 1..413 1988 92.6 Plus
CG12054-PB 406 CG12054-PB 1..308 111..413 1409 89.9 Plus
Smr-PF 3601 CG4013-PF 7..269 279..558 229 32.6 Plus