Clone BS10635 Report

Search the DGRC for BS10635

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG4839-RA
Protein status:BS10635.pep: full length peptide match
Sequenced Size:3044

Clone Sequence Records

BS10635.3prime Sequence

868 bp (825 high quality bases) assembled on 2006-04-19

> BS10635.3prime
ATGGTCTAGAAAGCTTTTAAAAGTCTTTATCCCATCCGCTCAGTTCCTCC
GGTGGCTCATAGTCGTTCTCAACACCCGAAGGACCAAAATATTGCAAGTC
GGTCCAACTCTTCAATGGTCTTTTGATGGGCGATGGCAATTGCTTCAGTT
TCAGTCTCTGCCAGTCGAGACTTTCGAACCAACTATGCCGCTTAATATCC
GCAATTCCCTTGCGCTGATATCCCAGTCTTTCCGCCGGCAGTTGCTTGCA
AAGATGCCGCACCAGGTGCTGTGCGGATTTGGGAATGCGCGATGGCATGT
GGATGACATCGATGCCGCTAAGGATTTGCTGATAGATCTTGATCTGGTTA
ACGCCCCTGAAGGGTGTTTTGCCAACCAGAAGTTCATATACCAGTATTCC
CAGTGCCCAATAGTCGACGGCACGATCGTGTCCGCGATCCAAGATTATCT
CGGGTGCCACGTACTCCGGTGTGCCAGCAAATGTGTTGGTCTTCTCATTC
TGCCGCACAAATTTGGCAAATCCAAAATCAACCAGTTTGCAATAGCCATC
GGTGCCCAGCATCAGATTCTCTGGCTTCAAGTCCCTGTAGATGAAGTGAT
GGGAGTGCAAGTAATCGAATGCCTCGACGACACAGCCCGCTATAAATTTG
GCGGTCTTCTCATCGAAGTACTGCCGCTTTGACATCACCGTCCATACATC
ACCGCCCATGCAGGCCTCCATTAGGAAGTAAACGTATTTGTCATTGCGGT
ACGTGCGATATAGTTGTACTATAAATGGCGATTGGCGGCACTTGATCATA
ACGTTCTTCTCGTTGTAAACGTGCTCTATTTGATCTTGCTTGACCACCTC
GATTTTCTTGATAATCTT

BS10635.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-PB 3012 CG4839-RB 2161..3012 868..17 4260 100 Minus
CG4839-PA 3012 CG4839-RA 2161..3012 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 6512 CG4839-RA 4470..5327 868..11 4275 99.9 Minus
CG4839-RB 3982 CG4839-RB 2837..3694 868..11 4275 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10154700..10155222 533..11 2600 99.8 Minus
2L 23513712 2L 10154254..10154487 764..531 1170 100 Minus
2L 23513712 2L 10154079..10154182 868..765 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:37:03 has no hits.

BS10635.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:30 Download gff for BS10635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PB 2161..3012 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:23 Download gff for BS10635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PA 2161..3012 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:58:02 Download gff for BS10635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 2837..3699 5..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:46 Download gff for BS10635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 2837..3699 5..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:46 Download gff for BS10635.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10154079..10154182 765..868 100 -> Minus
2L 10154254..10154485 533..764 100 -> Minus
2L 10154701..10155227 5..532 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:58:02 Download gff for BS10635.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10154079..10154182 765..868 100 -> Minus
arm_2L 10154254..10154485 533..764 100 -> Minus
arm_2L 10154701..10155227 5..532 99   Minus

BS10635.5prime Sequence

831 bp (817 high quality bases) assembled on 2006-04-19

> BS10635.5prime
GAAGTTATCAGTCGACATGGCCTGCTTTCCACGACTTTTCCACAATCGCA
GCAAAAACAAATTCACGCCCGCCGAAGATGAGAACACCGATACGATACTC
AACACACAAGATAGTAACGTGCAAATTGGCAAGTACATCCGTCGCGAGGA
GAAGCCACTGTACTCGCCCATCGTCACTCCGAGTGCCAGTGAGGCCAAAC
TTCAGCGCCTCAGACAGCAACAGCAGCCGCCCGGCTCACCGCCCGCACCC
GCCAGGTGGACCCTGCACTCGGTTGCCGAAAATGGCAGCGCAAACAATGG
CGTCCAGGAGCGGAAGTTCCGCACCAACAAGGACAAACTGCAGGCGCAGG
ATGCATGCCCATCCGGCGGCAGTGCAATTAATGTCATACGCTCAAGTTCG
AAATTAAAACCAGTCAAAGAGCGACGGCCCACCGCCTTGCCCACCGAAGT
GCCCAGCATCGAGATCGAGGATGTTCGGGATGCAAAGGACACTGGAGATG
GCATGGATTCACTGGGGGAGCGGGTGCAGCCGGGTGCTAATGCACATGTC
GATGTCGTCGATGGCGGCGGCAAGTCAAAACTCAAAGTGAATGTGAATGG
CATAATTGATGAGAGCGTCGCCCACGACGATGACTATGACACACCCTCGA
GCAACTCCATAGCCACAACACCTGTGACCGAGGGTCCTGTAAAGTTTTTC
ATTGGTCACACGCAGGAACTAAGCGCCCAGCAAACGGATGACACCTTGTC
CTGCCAGAGTAGCGATGCCAACAACAACAGTGCCGCCAAACTGACAAATG
GCGTCGTGCCACAGGAGCAACCGGAACGGGA

BS10635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-PB 3012 CG4839-RB 1..815 17..831 4075 100 Plus
CG4839-PA 3012 CG4839-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 6512 CG4839-RA 2310..3124 17..831 4075 100 Plus
CG4839-RB 3982 CG4839-RB 677..1491 17..831 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10150730..10151369 192..831 3200 100 Plus
2L 23513712 2L 10147085..10147189 17..121 525 100 Plus
2L 23513712 2L 10150337..10150410 121..194 370 100 Plus
Blast to na_te.dros performed on 2015-02-02 13:11:01 has no hits.

BS10635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:32 Download gff for BS10635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PB 1..814 17..830 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:25 Download gff for BS10635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:07:23 Download gff for BS10635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 662..1490 4..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:42 Download gff for BS10635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 662..1490 4..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:42 Download gff for BS10635.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10147070..10147189 4..121 95 -> Plus
2L 10150338..10150409 122..193 100 -> Plus
2L 10150732..10151368 194..830 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:07:23 Download gff for BS10635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10147070..10147189 4..121 95 -> Plus
arm_2L 10150338..10150409 122..193 100 -> Plus
arm_2L 10150732..10151368 194..830 100   Plus

BS10635.complete Sequence

3044 bp assembled on 2010-05-10

GenBank Submission: KX800737

> BS10635.complete
GAAGTTATCAGTCGACATGGCCTGCTTTCCACGACTTTTCCACAATCGCA
GCAAAAACAAATTCACGCCCGCCGAAGATGAGAACACCGATACGATACTC
AACACACAAGATAGTAACGTGCAAATTGGCAAGTACATCCGTCGCGAGGA
GAAGCCACTGTACTCGCCCATCGTCACTCCGAGTGCCAGTGAGGCCAAAC
TTCAGCGCCTCAGACAGCAACAGCAGCCGCCCGGCTCACCGCCCGCACCC
GCCAGGTGGACCCTGCACTCGGTTGCCGAAAATGGCAGCGCAAACAATGG
CGTCCAGGAGCGGAAGTTCCGCACCAACAAGGACAAACTGCAGGCGCAGG
ATGCATGCCCATCCGGCGGCAGTGCAATTAATGTCATACGCTCAAGTTCG
AAATTAAAACCAGTCAAAGAGCGACGGCCCACCGCCTTGCCCACCGAAGT
GCCCAGCATCGAGATCGAGGATGTTCGGGATGCAAAGGACACTGGAGATG
GCATGGATTCACTGGGGGAGCGGGTGCAGCCGGGTGCTAATGCACATGTC
GATGTCGTCGATGGCGGCGGCAAGTCAAAACTCAAAGTGAATGTGAATGG
CATAATTGATGAGAGCGTCGCCCACGACGATGACTATGACACACCCTCGA
GCAACTCCATAGCCACAACACCTGTGACCGAGGGTCCTGTAAAGTTTTTC
ATTGGTCACACGCAGGAACTAAGCGCCCAGCAAACGGATGACACCTTGTC
CTGCCAGAGTAGCGATGCCAACAACAACAGTGCCGCCAAACTGACAAATG
GCGTCGTGCCACAGGAGCAACCGGAACGGGAAATGGGCAAGCAGCAAGCA
CTCCAGGCTCCGCCCCGCGCCAAGAGCTCCAGCAATGTGTCACTCAATTA
TCTGGCCAAGAGCCAGACGGACAGCCAGCGTCGCCGACGTGTGTCCACGA
TGCCCGATATTAACATACCGCCAGCACCGCCGTTGCCGCCGGAACTCCTC
GTCCCCGGAACGCCGCTCCATCTGCGCAAGAAACGGAGCATGGAGCGACA
GCAGCAGCAGAAGCAACAGGAGCAGCAGCAGCAGCAGGAGATCCAGCAGG
ATGCTACGAATAGTCAAGATCAAATGGCAGGAGCTGAGGAGAGTCACAAG
TCCAGCGATTCCTCGACACCGAAAACCCATCGCGTTGAAGGTGGCCTCAT
CTATGTCCGTCCCAATTTTCCCATTCAGAGCGACATTGAAATCGAATCTA
TTGCAAAGGACGAAGGCACACGCAATCTCATACGAACGGCCATTGAGCGC
AATGATTTCCTCAATAATCTAATGGACAAGGAGCGCAAGGAGATGGTTAT
CAATGCAATGGCACCGGCCAGCTACAGGAAGCACAGCCTCATCATTCGTG
AGCACGAGGAGGGTTCCGAGATATATGTCTCCGCCGAGGGACAGTACGAT
GTCATCCGTGGTGGCCAACTGGTGGCCAGCTTTGGACCGGCCACTGTGTT
CGGCGAGCTGGCCATTCTCTACAATGCTCCACGCCAGGCGTCCATAGAGG
CTGCCACCGATGCACGCGTTTGGAAAATCGCACGCGAAACCTTCCGGGCC
ATCATGCAAATCTCGGGGTCCAGGGAGCGCGAGGAGAACCTTCAGTTCCT
GCGCTCCGCTCCATTCCTGCAGGAGTTCGACCAAAGTTTGTTGCTCAAAG
TCGTTGATCTTTTGCAGCGGAAATTCTACGAAACCGACAGCTGTATCGTT
CGCGAAGGTGAGCTGGGCAACGAGTTCTACATCATCCGGTGCGGAACTGT
GACCATAAAGAAGCTGGACGAACAGCAGCAGGAGCAGATTGTGGCGAATC
GAAAGCGAGGTGACTACTTCGGGGAGCAGGCACTGCTCAATGCGGATGTG
CGACAGGCCAGTGTCTATGCGGATGCACCGGGCACAGAGGTCCTAATGCT
GGACAGAGAAGCCTTCATTAGCTATTTGGGAACCATAAAGCAGCTGCGCG
AGAAGCCCAGTAGTCAGCGCAACGATACGAGTGGTCGTTCCAGCACCAAG
TCTCTGGAGTTCGACAACGAGTACTCCCAGGTGGCCATCTCGGAGCTAAA
GAAGATAGCCACGCTGGGCTGCGGCGCCTTTGGACGTGTGGATCTGGTGG
CCTACAACCAGCAGGCGTTGGCTTTGAAGATTATCAAGAAAATCGAGGTG
GTCAAGCAAGATCAAATAGAGCACGTTTACAACGAGAAGAACGTTATGAT
CAAGTGCCGCCAATCGCCATTTATAGTACAACTATATCGCACGTACCGCA
ATGACAAATACGTTTACTTCCTAATGGAGGCCTGCATGGGCGGTGATGTA
TGGACGGTGATGTCAAAGCGGCAGTACTTCGATGAGAAGACCGCCAAATT
TATAGCGGGCTGTGTCGTCGAGGCATTCGATTACTTGCACTCCCATCACT
TCATCTACAGGGACTTGAAGCCAGAGAATCTGATGCTGGGCACCGATGGC
TATTGCAAACTGGTTGATTTTGGATTTGCCAAATTTGTGCGGCAGAATGA
GAAGACCAACACATTTGCTGGCACACCGGAGTACGTGGCACCCGAGATAA
TCTTGGATCGCGGACACGATCGTGCCGTCGACTATTGGGCACTGGGAATA
CTGGTATATGAACTTCTGGTTGGCAAAACACCCTTCAGGGGCGTTAACCA
GATCAAGATCTATCAGCAAATCCTTAGCGGCATCGATGTCATCCACATGC
CATCGCGCATTCCCAAATCCGCACAGCACCTGGTGCGGCATCTTTGCAAG
CAACTGCCGGCGGAAAGACTGGGATATCAGCGCAAGGGAATTGCGGATAT
TAAGCGGCATAGTTGGTTCGAAAGTCTCGACTGGCAGAGACTGAAACTGA
AGCAATTGCCATCGCCCATCAAAAGACCATTGAAGAGTTGGACCGACTTG
CAATATTTTGGTCCTTCGGGTGTTGAGAACGACTATGAGCCACCGGAGGA
ACTGAGCGGATGGGATAAAGACTTTTAAAAGCTTTCTAGACCAT

BS10635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 3012 CG4839-PA 1..3012 17..3028 15060 100 Plus
CG4839-RB 3012 CG4839-PB 1..3012 17..3028 15060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-RA 6512 CG4839-RA 2310..5327 17..3034 15075 100 Plus
CG4839-RB 3982 CG4839-RB 677..3694 17..3034 15075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10150730..10151656 192..1118 4635 100 Plus
2L 23513712 2L 10154700..10155222 2512..3034 2600 99.8 Plus
2L 23513712 2L 10153862..10154182 1960..2280 1605 100 Plus
2L 23513712 2L 10152951..10153235 1266..1550 1425 100 Plus
2L 23513712 2L 10153560..10153799 1720..1959 1200 100 Plus
2L 23513712 2L 10154254..10154487 2281..2514 1170 100 Plus
2L 23513712 2L 10153322..10153492 1550..1720 855 100 Plus
2L 23513712 2L 10152697..10152845 1118..1266 745 100 Plus
2L 23513712 2L 10147085..10147189 17..121 525 100 Plus
2L 23513712 2L 10150337..10150410 121..194 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:55:16 has no hits.

BS10635.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:28 Download gff for BS10635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RA 227..3236 17..3026 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:00 Download gff for BS10635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 677..3686 17..3026 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:30 Download gff for BS10635.complete
Subject Subject Range Query Range Percent Splice Strand
CG4839-RB 677..3686 17..3026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:30 Download gff for BS10635.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10153561..10153799 1721..1959 100 -> Plus
2L 10154254..10154485 2281..2512 100 -> Plus
2L 10147085..10147189 17..121 100 -> Plus
2L 10150338..10150409 122..193 100 -> Plus
2L 10150732..10151655 194..1117 100 -> Plus
2L 10152697..10152845 1118..1266 100 -> Plus
2L 10152952..10153235 1267..1550 100 -> Plus
2L 10153323..10153492 1551..1720 100 -> Plus
2L 10153862..10154182 1960..2280 100 -> Plus
2L 10154701..10155214 2513..3026 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:00 Download gff for BS10635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10153561..10153799 1721..1959 100 -> Plus
arm_2L 10147085..10147189 17..121 100 -> Plus
arm_2L 10150338..10150409 122..193 100 -> Plus
arm_2L 10150732..10151655 194..1117 100 -> Plus
arm_2L 10152697..10152845 1118..1266 100 -> Plus
arm_2L 10152952..10153235 1267..1550 100 -> Plus
arm_2L 10153323..10153492 1551..1720 100 -> Plus
arm_2L 10153862..10154182 1960..2280 100 -> Plus
arm_2L 10154254..10154485 2281..2512 100 -> Plus
arm_2L 10154701..10155214 2513..3026 100   Plus

BS10635.pep Sequence

Translation from 16 to 3027

> BS10635.pep
MACFPRLFHNRSKNKFTPAEDENTDTILNTQDSNVQIGKYIRREEKPLYS
PIVTPSASEAKLQRLRQQQQPPGSPPAPARWTLHSVAENGSANNGVQERK
FRTNKDKLQAQDACPSGGSAINVIRSSSKLKPVKERRPTALPTEVPSIEI
EDVRDAKDTGDGMDSLGERVQPGANAHVDVVDGGGKSKLKVNVNGIIDES
VAHDDDYDTPSSNSIATTPVTEGPVKFFIGHTQELSAQQTDDTLSCQSSD
ANNNSAAKLTNGVVPQEQPEREMGKQQALQAPPRAKSSSNVSLNYLAKSQ
TDSQRRRRVSTMPDINIPPAPPLPPELLVPGTPLHLRKKRSMERQQQQKQ
QEQQQQQEIQQDATNSQDQMAGAEESHKSSDSSTPKTHRVEGGLIYVRPN
FPIQSDIEIESIAKDEGTRNLIRTAIERNDFLNNLMDKERKEMVINAMAP
ASYRKHSLIIREHEEGSEIYVSAEGQYDVIRGGQLVASFGPATVFGELAI
LYNAPRQASIEAATDARVWKIARETFRAIMQISGSREREENLQFLRSAPF
LQEFDQSLLLKVVDLLQRKFYETDSCIVREGELGNEFYIIRCGTVTIKKL
DEQQQEQIVANRKRGDYFGEQALLNADVRQASVYADAPGTEVLMLDREAF
ISYLGTIKQLREKPSSQRNDTSGRSSTKSLEFDNEYSQVAISELKKIATL
GCGAFGRVDLVAYNQQALALKIIKKIEVVKQDQIEHVYNEKNVMIKCRQS
PFIVQLYRTYRNDKYVYFLMEACMGGDVWTVMSKRQYFDEKTAKFIAGCV
VEAFDYLHSHHFIYRDLKPENLMLGTDGYCKLVDFGFAKFVRQNEKTNTF
AGTPEYVAPEIILDRGHDRAVDYWALGILVYELLVGKTPFRGVNQIKIYQ
QILSGIDVIHMPSRIPKSAQHLVRHLCKQLPAERLGYQRKGIADIKRHSW
FESLDWQRLKLKQLPSPIKRPLKSWTDLQYFGPSGVENDYEPPEELSGWD
KDF*

BS10635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4839-PA 1003 CG4839-PA 1..1003 1..1003 5191 100 Plus
CG4839-PB 1003 CG4839-PB 1..1003 1..1003 5191 100 Plus
Pkg21D-PA 768 CG3324-PA 161..768 407..1003 1329 44.6 Plus
for-PA 1088 CG10033-PA 503..1088 414..1003 1258 42.2 Plus
for-PI 1088 CG10033-PI 503..1088 414..1003 1258 42.2 Plus