Clone BS10637 Report

Search the DGRC for BS10637

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptRab3-RA
Protein status:BS10637.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10637.3prime Sequence

693 bp (692 high quality bases) assembled on 2006-04-19

> BS10637.3prime
ATGGTCTAGAAAGCTTCTAACAATTGCAGTTGGCATTAGGCGTGCCCTGC
GGCTGATCCGTCAACCTCTGGCCCTTCTGGCCACCGCCTACTAACGTCGG
ATCCGCGTCCAGGCTCTCGGACATCTTATCGCAGATGATGTCCACCAAAC
GCTCGAAAACAGCCTTGACGTTGACGTTCTCCTTGGCAGAGGTCTCGAAG
AACTCAACACCCAATTGATCGGCCAACTGGCGACCACGTTCGAAGCTGAT
TACCCGCTGGTCCTCCATGTCGCACTTGTTGCCCACCAGGATCACCTGGG
CATTGTCCCACGAATACGTTTTGATCTGTGTCACCCAATCCTGAACCGAG
TTAAAACTGTCCTCATTAGTGACATCGTACATTAGGATGAAACCCATCGC
TCCTCGGTAGTAGGCTGTGGTGATAGTTCTGTACCGCTCCTGTCCAGCAG
TGTCCCAGATCTGGAGTTTCACGCGCTTATCGTGCCGAAATACGGTCTTC
ACCTTAAAGTCAATGCCCACCGTGGAGACGAAGGCGGATGTGAAGCTATC
GTCGGCGTAGCGGAAGAGGAAGCTGGTCTTGCCCACGCTGGAGTTGCCAA
TGATGAGCAGCTTGAACATGTAGTCAAAGTTCTGGTCGGCGGCATCCTTC
TGCCACTTGGGGTCTCCGCCACTCGCCATGTCGACTGATAACT

BS10637.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7576-PA 663 Rab3-RA 1..663 679..17 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 3757 CG7576-RA 620..1283 679..16 3320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10724805..10725030 454..679 1130 100 Plus
2R 25286936 2R 10724013..10724186 163..336 870 100 Plus
2R 25286936 2R 10723809..10723958 16..165 750 100 Plus
2R 25286936 2R 10724248..10724368 335..455 605 100 Plus
Blast to na_te.dros performed on 2015-01-31 17:09:07 has no hits.

BS10637.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:35 Download gff for BS10637.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:29 Download gff for BS10637.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7576-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:43 Download gff for BS10637.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 11..679 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:54:10 Download gff for BS10637.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 11..679 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:10 Download gff for BS10637.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10723805..10723956 11..163 98 <- Plus
2R 10724014..10724185 164..335 100 <- Plus
2R 10724249..10724367 336..454 100 <- Plus
2R 10724806..10725030 455..679 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:43 Download gff for BS10637.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6611310..6611461 11..163 98 <- Plus
arm_2R 6611519..6611690 164..335 100 <- Plus
arm_2R 6611754..6611872 336..454 100 <- Plus
arm_2R 6612311..6612535 455..679 100   Plus

BS10637.5prime Sequence

693 bp (692 high quality bases) assembled on 2006-04-19

> BS10637.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTTAGAAGCTTTCTAGACC

BS10637.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7576-PA 663 Rab3-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 3757 CG7576-RA 620..1283 17..680 3320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10724805..10725030 242..17 1130 100 Minus
2R 25286936 2R 10724013..10724186 533..360 870 100 Minus
2R 25286936 2R 10723809..10723958 680..531 750 100 Minus
2R 25286936 2R 10724248..10724368 361..241 605 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:45:02 has no hits.

BS10637.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:36 Download gff for BS10637.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:30 Download gff for BS10637.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7576-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:04:43 Download gff for BS10637.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 17..685 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:38:50 Download gff for BS10637.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1287 17..685 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:38:50 Download gff for BS10637.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10723805..10723956 533..685 98 <- Minus
2R 10724014..10724185 361..532 100 <- Minus
2R 10724249..10724367 242..360 100 <- Minus
2R 10724806..10725030 17..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:04:43 Download gff for BS10637.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6611310..6611461 533..685 98 <- Minus
arm_2R 6611519..6611690 361..532 100 <- Minus
arm_2R 6611754..6611872 242..360 100 <- Minus
arm_2R 6612311..6612535 17..241 100   Minus

BS10637.complete Sequence

695 bp assembled on 2006-11-01

GenBank Submission: FJ636698

> BS10637.complete
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTTAGAAGCTTTCTAGACCAT

BS10637.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 663 CG7576-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 3757 CG7576-RA 620..1283 17..680 3320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10724805..10725030 242..17 1130 100 Minus
2R 25286936 2R 10724013..10724186 533..360 870 100 Minus
2R 25286936 2R 10723809..10723958 680..531 750 100 Minus
2R 25286936 2R 10724248..10724368 361..241 605 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:00:51 has no hits.

BS10637.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:40 Download gff for BS10637.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:01 Download gff for BS10637.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 607..1274 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:40 Download gff for BS10637.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1282 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:40 Download gff for BS10637.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 607..1274 17..685 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:43 Download gff for BS10637.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 620..1282 17..679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:43 Download gff for BS10637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10723810..10723956 533..679 100 <- Minus
2R 10724014..10724185 361..532 100 <- Minus
2R 10724249..10724367 242..360 100 <- Minus
2R 10724806..10725030 17..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:40 Download gff for BS10637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6611315..6611461 533..679 100 <- Minus
arm_2R 6611519..6611690 361..532 100 <- Minus
arm_2R 6611754..6611872 242..360 100 <- Minus
arm_2R 6612311..6612535 17..241 100   Minus

BS10637.pep Sequence

Translation from 16 to 678

> BS10637.pep
MASGGDPKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF
VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM
YDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGR
QLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGG
QKGQRLTDQPQGTPNANCNC*

BS10637.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-PA 220 CG7576-PA 1..220 1..220 1158 100 Plus
Rab10-PA 204 CG17060-PA 2..175 14..187 531 54 Plus
Rab8-PC 207 CG8287-PC 3..188 16..201 520 50 Plus
Rab8-PA 207 CG8287-PA 3..188 16..201 520 50 Plus
Rab1-PA 205 CG3320-PA 3..165 13..175 467 49.1 Plus