Clone Sequence Records
BS10637.3prime Sequence
693 bp (692 high quality bases) assembled on 2006-04-19
> BS10637.3prime
ATGGTCTAGAAAGCTTCTAACAATTGCAGTTGGCATTAGGCGTGCCCTGC
GGCTGATCCGTCAACCTCTGGCCCTTCTGGCCACCGCCTACTAACGTCGG
ATCCGCGTCCAGGCTCTCGGACATCTTATCGCAGATGATGTCCACCAAAC
GCTCGAAAACAGCCTTGACGTTGACGTTCTCCTTGGCAGAGGTCTCGAAG
AACTCAACACCCAATTGATCGGCCAACTGGCGACCACGTTCGAAGCTGAT
TACCCGCTGGTCCTCCATGTCGCACTTGTTGCCCACCAGGATCACCTGGG
CATTGTCCCACGAATACGTTTTGATCTGTGTCACCCAATCCTGAACCGAG
TTAAAACTGTCCTCATTAGTGACATCGTACATTAGGATGAAACCCATCGC
TCCTCGGTAGTAGGCTGTGGTGATAGTTCTGTACCGCTCCTGTCCAGCAG
TGTCCCAGATCTGGAGTTTCACGCGCTTATCGTGCCGAAATACGGTCTTC
ACCTTAAAGTCAATGCCCACCGTGGAGACGAAGGCGGATGTGAAGCTATC
GTCGGCGTAGCGGAAGAGGAAGCTGGTCTTGCCCACGCTGGAGTTGCCAA
TGATGAGCAGCTTGAACATGTAGTCAAAGTTCTGGTCGGCGGCATCCTTC
TGCCACTTGGGGTCTCCGCCACTCGCCATGTCGACTGATAACT
BS10637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7576-PA | 663 | Rab3-RA | 1..663 | 679..17 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 3757 | CG7576-RA | 620..1283 | 679..16 | 3320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10724805..10725030 | 454..679 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 10724013..10724186 | 163..336 | 870 | 100 | Plus |
2R | 25286936 | 2R | 10723809..10723958 | 16..165 | 750 | 100 | Plus |
2R | 25286936 | 2R | 10724248..10724368 | 335..455 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:09:07 has no hits.
BS10637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:35 Download gff for
BS10637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:29 Download gff for
BS10637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7576-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:43 Download gff for
BS10637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 11..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:54:10 Download gff for
BS10637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 11..679 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:10 Download gff for
BS10637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10723805..10723956 | 11..163 | 98 | <- | Plus |
2R | 10724014..10724185 | 164..335 | 100 | <- | Plus |
2R | 10724249..10724367 | 336..454 | 100 | <- | Plus |
2R | 10724806..10725030 | 455..679 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:43 Download gff for
BS10637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6611310..6611461 | 11..163 | 98 | <- | Plus |
arm_2R | 6611519..6611690 | 164..335 | 100 | <- | Plus |
arm_2R | 6611754..6611872 | 336..454 | 100 | <- | Plus |
arm_2R | 6612311..6612535 | 455..679 | 100 | | Plus |
BS10637.5prime Sequence
693 bp (692 high quality bases) assembled on 2006-04-19
> BS10637.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTTAGAAGCTTTCTAGACC
BS10637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7576-PA | 663 | Rab3-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 3757 | CG7576-RA | 620..1283 | 17..680 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10724805..10725030 | 242..17 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 10724013..10724186 | 533..360 | 870 | 100 | Minus |
2R | 25286936 | 2R | 10723809..10723958 | 680..531 | 750 | 100 | Minus |
2R | 25286936 | 2R | 10724248..10724368 | 361..241 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:45:02 has no hits.
BS10637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:36 Download gff for
BS10637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:30 Download gff for
BS10637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7576-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:04:43 Download gff for
BS10637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:38:50 Download gff for
BS10637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1287 | 17..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:38:50 Download gff for
BS10637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10723805..10723956 | 533..685 | 98 | <- | Minus |
2R | 10724014..10724185 | 361..532 | 100 | <- | Minus |
2R | 10724249..10724367 | 242..360 | 100 | <- | Minus |
2R | 10724806..10725030 | 17..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:04:43 Download gff for
BS10637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6611310..6611461 | 533..685 | 98 | <- | Minus |
arm_2R | 6611519..6611690 | 361..532 | 100 | <- | Minus |
arm_2R | 6611754..6611872 | 242..360 | 100 | <- | Minus |
arm_2R | 6612311..6612535 | 17..241 | 100 | | Minus |
BS10637.complete Sequence
695 bp assembled on 2006-11-01
GenBank Submission: FJ636698
> BS10637.complete
GAAGTTATCAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGG
ATGCCGCCGACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGC
AACTCCAGCGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAG
CTTCACATCCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGA
CCGTATTTCGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCT
GGACAGGAGCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGAT
GGGTTTCATCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGG
TTCAGGATTGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAG
GTGATCCTGGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAG
CTTCGAACGTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCG
AGACCTCTGCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTG
GTGGACATCATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGAC
GTTAGTAGGCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGG
GCACGCCTAATGCCAACTGCAATTGTTAGAAGCTTTCTAGACCAT
BS10637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 663 | CG7576-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-RA | 3757 | CG7576-RA | 620..1283 | 17..680 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10724805..10725030 | 242..17 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 10724013..10724186 | 533..360 | 870 | 100 | Minus |
2R | 25286936 | 2R | 10723809..10723958 | 680..531 | 750 | 100 | Minus |
2R | 25286936 | 2R | 10724248..10724368 | 361..241 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:00:51 has no hits.
BS10637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:40 Download gff for
BS10637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:01 Download gff for
BS10637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 607..1274 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:40 Download gff for
BS10637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1282 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:40 Download gff for
BS10637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 607..1274 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:43 Download gff for
BS10637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab3-RA | 620..1282 | 17..679 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:43 Download gff for
BS10637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10723810..10723956 | 533..679 | 100 | <- | Minus |
2R | 10724014..10724185 | 361..532 | 100 | <- | Minus |
2R | 10724249..10724367 | 242..360 | 100 | <- | Minus |
2R | 10724806..10725030 | 17..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:40 Download gff for
BS10637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6611315..6611461 | 533..679 | 100 | <- | Minus |
arm_2R | 6611519..6611690 | 361..532 | 100 | <- | Minus |
arm_2R | 6611754..6611872 | 242..360 | 100 | <- | Minus |
arm_2R | 6612311..6612535 | 17..241 | 100 | | Minus |
BS10637.pep Sequence
Translation from 16 to 678
> BS10637.pep
MASGGDPKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF
VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM
YDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGR
QLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGG
QKGQRLTDQPQGTPNANCNC*
BS10637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab3-PA | 220 | CG7576-PA | 1..220 | 1..220 | 1158 | 100 | Plus |
Rab10-PA | 204 | CG17060-PA | 2..175 | 14..187 | 531 | 54 | Plus |
Rab8-PC | 207 | CG8287-PC | 3..188 | 16..201 | 520 | 50 | Plus |
Rab8-PA | 207 | CG8287-PA | 3..188 | 16..201 | 520 | 50 | Plus |
Rab1-PA | 205 | CG3320-PA | 3..165 | 13..175 | 467 | 49.1 | Plus |